Isodon smithianus chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · NC_067684.1 · 11–85 bp · −
psbA · NC_067684.1 · 393–1,451 bp · −
trnK-UUU · NC_067684.1 · 1,683–4,263 bp · −
matK · NC_067684.1 · 2,003–3,523 bp · −
ON901_pgp086 · NC_067684.1 · 4,798–5,943 bp · −
trnQ-UUG · NC_067684.1 · 6,895–6,966 bp · −
trnS-GCU · NC_067684.1 · 8,199–8,286 bp · −
atpA · NC_067684.1 · 10,172–11,695 bp · −
atpF · NC_067684.1 · 11,800–13,050 bp · −
atpH · NC_067684.1 · 13,342–13,587 bp · −
atpI · NC_067684.1 · 14,588–15,331 bp · −
rps2 · NC_067684.1 · 15,557–16,267 bp · −
rpoC2 · NC_067684.1 · 16,484–20,665 bp · −
rpoC1 · NC_067684.1 · 20,830–23,663 bp · −
rpoB · NC_067684.1 · 23,690–26,902 bp · −
psbM · NC_067684.1 · 29,408–29,512 bp · −
trnD-GUC · NC_067684.1 · 30,031–30,104 bp · −
trnY-GUA · NC_067684.1 · 30,215–30,298 bp · −
trnE-UUC · NC_067684.1 · 30,376–30,448 bp · −
trnS-UGA · NC_067684.1 · 35,105–35,197 bp · −
trnfM-CAU · NC_067684.1 · 36,228–36,301 bp · −
rps14 · NC_067684.1 · 36,447–36,749 bp · −
psaB · NC_067684.1 · 36,872–39,076 bp · −
psaA · NC_067684.1 · 39,102–41,354 bp · −
ycf3 · NC_067684.1 · 42,127–44,067 bp · −
rps4 · NC_067684.1 · 45,323–45,928 bp · −
trnT-UGU · NC_067684.1 · 46,354–46,426 bp · −
ndhJ · NC_067684.1 · 48,697–49,173 bp · −
ndhK · NC_067684.1 · 49,284–49,961 bp · −
ndhC · NC_067684.1 · 50,013–50,375 bp · −
trnV-UAC · NC_067684.1 · 51,338–51,994 bp · −
atpE · NC_067684.1 · 52,448–52,849 bp · −
atpB · NC_067684.1 · 52,846–54,342 bp · −
psbJ · NC_067684.1 · 64,050–64,172 bp · −
psbL · NC_067684.1 · 64,307–64,423 bp · −
psbF · NC_067684.1 · 64,447–64,566 bp · −
psbE · NC_067684.1 · 64,581–64,832 bp · −
trnW-CCA · NC_067684.1 · 66,231–66,304 bp · −
trnP-UGG · NC_067684.1 · 66,473–66,546 bp · −
rpl20 · NC_067684.1 · 68,331–68,717 bp · −
rps12 · NC_067684.1 · 69,451–69,564 bp · −
rps12 · NC_067684.1 · 96,859–97,651 bp · −
clpP · NC_067684.1 · 69,683–71,599 bp · −
psbN · NC_067684.1 · 73,950–74,081 bp · −
rpoA · NC_067684.1 · 77,455–78,462 bp · −
rps11 · NC_067684.1 · 78,534–78,950 bp · −
rpl36 · NC_067684.1 · 79,066–79,179 bp · −
infA · NC_067684.1 · 79,275–79,508 bp · −
rps8 · NC_067684.1 · 79,634–80,038 bp · −
rpl14 · NC_067684.1 · 80,221–80,589 bp · −
rpl16 · NC_067684.1 · 80,723–81,991 bp · −
rps3 · NC_067684.1 · 82,135–82,797 bp · −
rpl22 · NC_067684.1 · 82,782–83,255 bp · −
rps19 · NC_067684.1 · 83,320–83,598 bp · −
rpl2 · NC_067684.1 · 83,666–85,144 bp · −
rpl23 · NC_067684.1 · 85,163–85,444 bp · −
trnI-CAU · NC_067684.1 · 85,610–85,683 bp · −
trnL-CAA · NC_067684.1 · 93,208–93,288 bp · −
ndhB · NC_067684.1 · 93,860–96,067 bp · −
rps7 · NC_067684.1 · 96,338–96,805 bp · −
trnN-GUU · NC_067684.1 · 107,802–107,873 bp · −
ndhF · NC_067684.1 · 109,239–111,470 bp · −
ndhD · NC_067684.1 · 114,252–115,781 bp · −
psaC · NC_067684.1 · 115,872–116,117 bp · −
ndhE · NC_067684.1 · 116,373–116,678 bp · −
ndhG · NC_067684.1 · 116,893–117,423 bp · −
ndhI · NC_067684.1 · 117,782–118,288 bp · −
ndhA · NC_067684.1 · 118,369–120,491 bp · −
ndhH · NC_067684.1 · 120,493–121,674 bp · −
rps15 · NC_067684.1 · 121,789–122,061 bp · −
ycf1 · NC_067684.1 · 122,491–128,013 bp · −
trnR-ACG · NC_067684.1 · 128,993–129,066 bp · −
rrn5 · NC_067684.1 · 129,310–129,430 bp · −
rrn4.5 · NC_067684.1 · 129,686–129,788 bp · −
rrn23 · NC_067684.1 · 129,887–132,697 bp · −
trnA-UGC · NC_067684.1 · 132,869–133,746 bp · −
trnI-GAU · NC_067684.1 · 133,811–134,829 bp · −
rrn16 · NC_067684.1 · 135,127–136,617 bp · −
trnV-GAC · NC_067684.1 · 136,844–136,915 bp · −
ycf15 · NC_067684.1 · 143,281–143,430 bp · −
ycf2 · NC_067684.1 · 143,620–150,450 bp · −
psbK · NC_067684.1 · 7,360–7,545 bp · +
psbI · NC_067684.1 · 7,933–8,043 bp · +
trnG-UCC · NC_067684.1 · 9,047–9,806 bp · +
trnR-UCU · NC_067684.1 · 9,997–10,068 bp · +
trnC-GCA · NC_067684.1 · 28,092–28,162 bp · +
petN · NC_067684.1 · 28,325–28,414 bp · +
trnT-GGU · NC_067684.1 · 31,051–31,122 bp · +
psbD · NC_067684.1 · 32,440–33,501 bp · +
psbC · NC_067684.1 · 33,449–34,870 bp · +
psbZ · NC_067684.1 · 35,538–35,726 bp · +
trnG-GCC · NC_067684.1 · 35,971–36,041 bp · +
trnS-GGA · NC_067684.1 · 44,931–45,017 bp · +
trnL-UAA · NC_067684.1 · 47,114–47,663 bp · +
trnF-GAA · NC_067684.1 · 47,957–48,029 bp · +
trnM-CAU · NC_067684.1 · 52,175–52,247 bp · +
rbcL · NC_067684.1 · 55,134–56,567 bp · +
accD · NC_067684.1 · 57,272–58,753 bp · +
psaI · NC_067684.1 · 59,452–59,562 bp · +
ycf4 · NC_067684.1 · 60,009–60,563 bp · +
cemA · NC_067684.1 · 61,154–61,843 bp · +
petA · NC_067684.1 · 62,058–63,020 bp · +
petL · NC_067684.1 · 65,725–65,820 bp · +
petG · NC_067684.1 · 65,995–66,108 bp · +
psaJ · NC_067684.1 · 66,828–66,962 bp · +
rpl33 · NC_067684.1 · 67,424–67,624 bp · +
rps18 · NC_067684.1 · 67,791–68,096 bp · +
rps12 · NC_067684.1 · 138,577–139,369 bp · +
psbB · NC_067684.1 · 72,072–73,598 bp · +
psbT · NC_067684.1 · 73,783–73,884 bp · +
psbH · NC_067684.1 · 74,187–74,405 bp · +
petB · NC_067684.1 · 74,531–75,897 bp · +
petD · NC_067684.1 · 76,086–77,278 bp · +
ycf2 · NC_067684.1 · 85,778–92,608 bp · +
ycf15 · NC_067684.1 · 92,798–92,947 bp · +
trnV-GAC · NC_067684.1 · 99,313–99,384 bp · +
rrn16 · NC_067684.1 · 99,611–101,101 bp · +
trnI-GAU · NC_067684.1 · 101,399–102,417 bp · +
trnA-UGC · NC_067684.1 · 102,482–103,359 bp · +
rrn23 · NC_067684.1 · 103,531–106,341 bp · +
rrn4.5 · NC_067684.1 · 106,440–106,542 bp · +
rrn5 · NC_067684.1 · 106,798–106,918 bp · +
trnR-ACG · NC_067684.1 · 107,162–107,235 bp · +
ycf1 · NC_067684.1 · 108,215–109,345 bp · +
rpl32 · NC_067684.1 · 111,946–112,116 bp · +
trnL-UAG · NC_067684.1 · 112,880–112,959 bp · +
ccsA · NC_067684.1 · 113,048–114,019 bp · +
trnN-GUU · NC_067684.1 · 128,355–128,426 bp · +
rps7 · NC_067684.1 · 139,423–139,890 bp · +
ndhB · NC_067684.1 · 140,161–142,368 bp · +
trnL-CAA · NC_067684.1 · 142,940–143,020 bp · +
trnI-CAU · NC_067684.1 · 150,545–150,618 bp · +
rpl23 · NC_067684.1 · 150,784–151,065 bp · +
rpl2 · NC_067684.1 · 151,084–152,562 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Isodon smithianus
ANNOTATED PLASTOME
NC_067684.1
152,672 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
ATP synthase
Ribosomal protein
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38168 76336 114504 152672 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG ycf1 rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK ON901_pgp086 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 11 85 75 Locate
psbA gene − 393 1451 1059 Locate
trnK-UUU gene − 1683 4263 2581 Locate
matK gene − 2003 3523 1521 Locate
ON901_pgp086 gene − 4798 5943 1146 Locate
trnQ-UUG gene − 6895 6966 72 Locate
psbK gene + 7360 7545 186 Locate
psbI gene + 7933 8043 111 Locate
trnS-GCU gene − 8199 8286 88 Locate
trnG-UCC gene + 9047 9806 760 Locate
trnR-UCU gene + 9997 10068 72 Locate
atpA gene − 10172 11695 1524 Locate
atpF gene − 11800 13050 1251 Locate
atpH gene − 13342 13587 246 Locate
atpI gene − 14588 15331 744 Locate
rps2 gene − 15557 16267 711 Locate
rpoC2 gene − 16484 20665 4182 Locate
rpoC1 gene − 20830 23663 2834 Locate
rpoB gene − 23690 26902 3213 Locate
trnC-GCA gene + 28092 28162 71 Locate
petN gene + 28325 28414 90 Locate
psbM gene − 29408 29512 105 Locate
trnD-GUC gene − 30031 30104 74 Locate
trnY-GUA gene − 30215 30298 84 Locate
trnE-UUC gene − 30376 30448 73 Locate
trnT-GGU gene + 31051 31122 72 Locate
psbD gene + 32440 33501 1062 Locate
psbC gene + 33449 34870 1422 Locate
trnS-UGA gene − 35105 35197 93 Locate
psbZ gene + 35538 35726 189 Locate
trnG-GCC gene + 35971 36041 71 Locate
trnfM-CAU gene − 36228 36301 74 Locate
rps14 gene − 36447 36749 303 Locate
psaB gene − 36872 39076 2205 Locate
psaA gene − 39102 41354 2253 Locate
ycf3 gene − 42127 44067 1941 Locate
trnS-GGA gene + 44931 45017 87 Locate
rps4 gene − 45323 45928 606 Locate
trnT-UGU gene − 46354 46426 73 Locate
trnL-UAA gene + 47114 47663 550 Locate
trnF-GAA gene + 47957 48029 73 Locate
ndhJ gene − 48697 49173 477 Locate
ndhK gene − 49284 49961 678 Locate
ndhC gene − 50013 50375 363 Locate
trnV-UAC gene − 51338 51994 657 Locate
trnM-CAU gene + 52175 52247 73 Locate
atpE gene − 52448 52849 402 Locate
atpB gene − 52846 54342 1497 Locate
rbcL gene + 55134 56567 1434 Locate
accD gene + 57272 58753 1482 Locate
psaI gene + 59452 59562 111 Locate
ycf4 gene + 60009 60563 555 Locate
cemA gene + 61154 61843 690 Locate
petA gene + 62058 63020 963 Locate
psbJ gene − 64050 64172 123 Locate
psbL gene − 64307 64423 117 Locate
psbF gene − 64447 64566 120 Locate
psbE gene − 64581 64832 252 Locate
petL gene + 65725 65820 96 Locate
petG gene + 65995 66108 114 Locate
trnW-CCA gene − 66231 66304 74 Locate
trnP-UGG gene − 66473 66546 74 Locate
psaJ gene + 66828 66962 135 Locate
rpl33 gene + 67424 67624 201 Locate
rps18 gene + 67791 68096 306 Locate
rpl20 gene − 68331 68717 387 Locate
rps12 gene − 69451 69564 114 Locate
clpP gene − 69683 71599 1917 Locate
psbB gene + 72072 73598 1527 Locate
psbT gene + 73783 73884 102 Locate
psbN gene − 73950 74081 132 Locate
psbH gene + 74187 74405 219 Locate
petB gene + 74531 75897 1367 Locate
petD gene + 76086 77278 1193 Locate
rpoA gene − 77455 78462 1008 Locate
rps11 gene − 78534 78950 417 Locate
rpl36 gene − 79066 79179 114 Locate
infA gene − 79275 79508 234 Locate
rps8 gene − 79634 80038 405 Locate
rpl14 gene − 80221 80589 369 Locate
rpl16 gene − 80723 81991 1269 Locate
rps3 gene − 82135 82797 663 Locate
rpl22 gene − 82782 83255 474 Locate
rps19 gene − 83320 83598 279 Locate
rpl2 gene − 83666 85144 1479 Locate
rpl23 gene − 85163 85444 282 Locate
trnI-CAU gene − 85610 85683 74 Locate
ycf2 gene + 85778 92608 6831 Locate
ycf15 gene + 92798 92947 150 Locate
trnL-CAA gene − 93208 93288 81 Locate
ndhB gene − 93860 96067 2208 Locate
rps7 gene − 96338 96805 468 Locate
rps12 gene − 96859 97651 793 Locate
trnV-GAC gene + 99313 99384 72 Locate
rrn16 gene + 99611 101101 1491 Locate
trnI-GAU gene + 101399 102417 1019 Locate
trnA-UGC gene + 102482 103359 878 Locate
rrn23 gene + 103531 106341 2811 Locate
rrn4.5 gene + 106440 106542 103 Locate
rrn5 gene + 106798 106918 121 Locate
trnR-ACG gene + 107162 107235 74 Locate
trnN-GUU gene − 107802 107873 72 Locate
ycf1 gene + 108215 109345 1131 Locate
ndhF gene − 109239 111470 2232 Locate
rpl32 gene + 111946 112116 171 Locate
trnL-UAG gene + 112880 112959 80 Locate
ccsA gene + 113048 114019 972 Locate
ndhD gene − 114252 115781 1530 Locate
psaC gene − 115872 116117 246 Locate
ndhE gene − 116373 116678 306 Locate
ndhG gene − 116893 117423 531 Locate
ndhI gene − 117782 118288 507 Locate
ndhA gene − 118369 120491 2123 Locate
ndhH gene − 120493 121674 1182 Locate
rps15 gene − 121789 122061 273 Locate
ycf1 gene − 122491 128013 5523 Locate
trnN-GUU gene + 128355 128426 72 Locate
trnR-ACG gene − 128993 129066 74 Locate
rrn5 gene − 129310 129430 121 Locate
rrn4.5 gene − 129686 129788 103 Locate
rrn23 gene − 129887 132697 2811 Locate
trnA-UGC gene − 132869 133746 878 Locate
trnI-GAU gene − 133811 134829 1019 Locate
rrn16 gene − 135127 136617 1491 Locate
trnV-GAC gene − 136844 136915 72 Locate
rps12 gene + 138577 139369 793 Locate
rps7 gene + 139423 139890 468 Locate
ndhB gene + 140161 142368 2208 Locate
trnL-CAA gene + 142940 143020 81 Locate
ycf15 gene − 143281 143430 150 Locate
ycf2 gene − 143620 150450 6831 Locate
trnI-CAU gene + 150545 150618 74 Locate
rpl23 gene + 150784 151065 282 Locate
rpl2 gene + 151084 152562 1479 Locate
Status Available
Accession NC_067684.1
Length 152,672 bp
GC content 37.6%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 16 Atp Synthase 6 Ribosomal Protein 25 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources