Isodon sp CL-2021 chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
trnH-GUG · MW940491.1 · 50–124 bp · −
trnH-GUG · MW940491.1 · 51–125 bp · −
psbA · MW940491.1 · 433–1,491 bp · −
trnK-UUU · MW940491.1 · 1,722–4,298 bp · −
matK · MW940491.1 · 2,043–3,563 bp · −
rps16 · MW940491.1 · 4,827–5,972 bp · −
trnQ-UUG · MW940491.1 · 6,913–6,985 bp · −
trnQ-UUG · MW940491.1 · 6,914–6,985 bp · −
trnS-GCU · MW940491.1 · 8,218–8,305 bp · −
atpA · MW940491.1 · 10,197–11,720 bp · −
atpF · MW940491.1 · 11,824–13,069 bp · −
atpH · MW940491.1 · 13,361–13,606 bp · −
atpI · MW940491.1 · 14,607–15,350 bp · −
rps2 · MW940491.1 · 15,576–16,286 bp · −
rpoC2 · MW940491.1 · 16,503–20,672 bp · −
rpoC1 · MW940491.1 · 20,849–23,687 bp · −
rpoB · MW940491.1 · 23,714–26,926 bp · −
psbM · MW940491.1 · 29,431–29,535 bp · −
trnD-GUC · MW940491.1 · 30,052–30,128 bp · −
trnD-GUC · MW940491.1 · 30,054–30,127 bp · −
trnY-GUA · MW940491.1 · 30,237–30,322 bp · −
trnY-GUA · MW940491.1 · 30,238–30,321 bp · −
trnE-UUC · MW940491.1 · 30,400–30,472 bp · −
trnS-UGA · MW940491.1 · 35,139–35,230 bp · −
trnS-UGA · MW940491.1 · 35,139–35,231 bp · −
trnM-CAU · MW940491.1 · 36,265–36,339 bp · −
trnfM-CAU · MW940491.1 · 36,266–36,339 bp · −
rps14 · MW940491.1 · 36,485–36,787 bp · −
psaB · MW940491.1 · 36,910–39,114 bp · −
psaA · MW940491.1 · 39,140–41,392 bp · −
ycf3 · MW940491.1 · 42,166–44,113 bp · −
rps4 · MW940491.1 · 45,361–45,966 bp · −
trnT-UGU · MW940491.1 · 46,391–46,465 bp · −
trnT-UGU · MW940491.1 · 46,392–46,464 bp · −
ndhJ · MW940491.1 · 48,729–49,205 bp · −
ndhK · MW940491.1 · 49,310–49,987 bp · −
ndhC · MW940491.1 · 50,039–50,401 bp · −
atpE · MW940491.1 · 52,456–52,857 bp · −
atpB · MW940491.1 · 52,854–54,350 bp · −
psbJ · MW940491.1 · 64,065–64,187 bp · −
psbL · MW940491.1 · 64,322–64,438 bp · −
psbF · MW940491.1 · 64,462–64,581 bp · −
psbE · MW940491.1 · 64,596–64,847 bp · −
trnW-CCA · MW940491.1 · 66,237–66,310 bp · −
trnP-UGG · MW940491.1 · 66,477–66,552 bp · −
trnP-UGG · MW940491.1 · 66,479–66,552 bp · −
rpl20 · MW940491.1 · 68,337–68,723 bp · −
rps12 · MW940491.1 · 69,458–69,571 bp · −
rps12 · MW940491.1 · 96,871–97,663 bp · −
clpP1 · MW940491.1 · 69,690–71,609 bp · −
rpoA · MW940491.1 · 77,459–78,466 bp · −
rps11 · MW940491.1 · 78,538–78,954 bp · −
rpl36 · MW940491.1 · 79,070–79,183 bp · −
infA · MW940491.1 · 79,279–79,512 bp · −
rps8 · MW940491.1 · 79,639–80,043 bp · −
rpl14 · MW940491.1 · 80,234–80,602 bp · −
rpl16 · MW940491.1 · 80,736–82,003 bp · −
rps3 · MW940491.1 · 82,147–82,809 bp · −
rpl22 · MW940491.1 · 82,794–83,267 bp · −
rps19 · MW940491.1 · 83,332–83,610 bp · −
rpl2 · MW940491.1 · 83,678–85,156 bp · −
rpl23 · MW940491.1 · 85,175–85,456 bp · −
trnM-CAU · MW940491.1 · 85,621–85,695 bp · −
trnI-CAU · MW940491.1 · 85,622–85,695 bp · −
trnL-CAA · MW940491.1 · 93,219–93,301 bp · −
trnL-CAA · MW940491.1 · 93,220–93,300 bp · −
ndhB · MW940491.1 · 93,872–96,079 bp · −
rps7 · MW940491.1 · 96,350–96,817 bp · −
trnN-GUU · MW940491.1 · 107,814–107,886 bp · −
trnN-GUU · MW940491.1 · 107,814–107,887 bp · −
trnN-GUU · MW940491.1 · 107,815–107,886 bp · −
ndhF · MW940491.1 · 109,252–111,483 bp · −
ndhD · MW940491.1 · 114,258–115,787 bp · −
psaC · MW940491.1 · 115,878–116,123 bp · −
ndhE · MW940491.1 · 116,379–116,684 bp · −
ndhG · MW940491.1 · 116,899–117,429 bp · −
ndhI · MW940491.1 · 117,790–118,296 bp · −
ndhA · MW940491.1 · 118,377–120,500 bp · −
ndhH · MW940491.1 · 120,502–121,683 bp · −
rps15 · MW940491.1 · 121,798–122,070 bp · −
ycf1 · MW940491.1 · 122,500–128,022 bp · −
trnR-ACG · MW940491.1 · 129,001–129,075 bp · −
trnR-ACG · MW940491.1 · 129,002–129,075 bp · −
rrn5 · MW940491.1 · 129,319–129,439 bp · −
rrn4.5 · MW940491.1 · 129,695–129,797 bp · −
rrn23 · MW940491.1 · 129,897–132,706 bp · −
trnA-UGC · MW940491.1 · 132,878–133,756 bp · −
trnI-GAU · MW940491.1 · 133,821–134,839 bp · −
rrn16 · MW940491.1 · 135,137–136,627 bp · −
trnV-GAC · MW940491.1 · 136,854–136,925 bp · −
ycf15 · MW940491.1 · 143,291–143,440 bp · −
ycf2 · MW940491.1 · 143,630–150,460 bp · −
psbK · MW940491.1 · 7,379–7,564 bp · +
psbI · MW940491.1 · 7,952–8,062 bp · +
trnG-UCC · MW940491.1 · 9,071–9,830 bp · +
trnR-UCU · MW940491.1 · 10,022–10,093 bp · +
trnC-GCA · MW940491.1 · 28,116–28,186 bp · +
trnC-GCA · MW940491.1 · 28,116–28,196 bp · +
petN · MW940491.1 · 28,349–28,438 bp · +
trnT-GGU · MW940491.1 · 31,081–31,154 bp · +
trnT-GGU · MW940491.1 · 31,082–31,153 bp · +
psbD · MW940491.1 · 32,471–33,532 bp · +
psbC · MW940491.1 · 33,516–34,901 bp · +
psbZ · MW940491.1 · 35,572–35,760 bp · +
trnG-GCC · MW940491.1 · 36,005–36,075 bp · +
trnS-GGA · MW940491.1 · 44,978–45,064 bp · +
trnS-GGA · MW940491.1 · 44,978–45,065 bp · +
trnL-UAA · MW940491.1 · 47,152–47,695 bp · +
trnF-GAA · MW940491.1 · 47,989–48,061 bp · +
trnF-GAA · MW940491.1 · 47,989–48,062 bp · +
trnM-CAU · MW940491.1 · 52,183–52,255 bp · +
trnM-CAU · MW940491.1 · 52,184–52,255 bp · +
rbcL · MW940491.1 · 55,141–56,574 bp · +
accD · MW940491.1 · 57,279–58,760 bp · +
psaI · MW940491.1 · 59,460–59,570 bp · +
ycf4 · MW940491.1 · 60,017–60,571 bp · +
cemA · MW940491.1 · 61,161–61,850 bp · +
petA · MW940491.1 · 62,065–63,027 bp · +
petL · MW940491.1 · 65,740–65,835 bp · +
petG · MW940491.1 · 66,010–66,123 bp · +
psaJ · MW940491.1 · 66,834–66,968 bp · +
rpl33 · MW940491.1 · 67,431–67,631 bp · +
rps18 · MW940491.1 · 67,798–68,103 bp · +
rps12 · MW940491.1 · 138,587–139,379 bp · +
psbB · MW940491.1 · 72,082–73,608 bp · +
psbT · MW940491.1 · 73,793–73,894 bp · +
psbH · MW940491.1 · 74,197–74,415 bp · +
petB · MW940491.1 · 74,541–75,901 bp · +
petD · MW940491.1 · 76,090–77,282 bp · +
ycf2 · MW940491.1 · 85,790–92,620 bp · +
ycf15 · MW940491.1 · 92,810–92,959 bp · +
trnV-GAC · MW940491.1 · 99,325–99,396 bp · +
rrn16 · MW940491.1 · 99,623–101,113 bp · +
trnI-GAU · MW940491.1 · 101,411–102,429 bp · +
trnA-UGC · MW940491.1 · 102,494–103,372 bp · +
rrn23 · MW940491.1 · 103,544–106,155 bp · +
rrn23 · MW940491.1 · 103,544–106,354 bp · +
rrn4.5 · MW940491.1 · 106,453–106,555 bp · +
rrn5 · MW940491.1 · 106,811–106,931 bp · +
trnR-ACG · MW940491.1 · 107,175–107,248 bp · +
trnR-ACG · MW940491.1 · 107,175–107,249 bp · +
ycf1 · MW940491.1 · 108,228–109,358 bp · +
rpl32 · MW940491.1 · 111,952–112,122 bp · +
trnL-UAG · MW940491.1 · 112,887–112,966 bp · +
ccsA · MW940491.1 · 113,055–114,026 bp · +
trnN-GUU · MW940491.1 · 128,363–128,436 bp · +
trnN-GUU · MW940491.1 · 128,364–128,435 bp · +
trnN-GUU · MW940491.1 · 128,364–128,436 bp · +
rps7 · MW940491.1 · 139,433–139,900 bp · +
ndhB · MW940491.1 · 140,171–142,378 bp · +
trnL-CAA · MW940491.1 · 142,949–143,031 bp · +
trnL-CAA · MW940491.1 · 142,950–143,030 bp · +
trnI-CAU · MW940491.1 · 150,555–150,628 bp · +
trnM-CAU · MW940491.1 · 150,555–150,629 bp · +
rpl23 · MW940491.1 · 150,794–151,075 bp · +
rpl2 · MW940491.1 · 151,094–152,572 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Isodon sp CL-2021
ANNOTATED PLASTOME
MW940491.1
152,642 bp · 155 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38160 76321 114482 152642 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA trnC-GCA petN trnT-GGU trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnS-GGA trnL-UAA trnF-GAA trnF-GAA trnM-CAU trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn23 rrn4.5 rrn5 trnR-ACG trnR-ACG ycf1 rpl32 trnL-UAG ccsA trnN-GUU trnN-GUU trnN-GUU rps12 rps7 ndhB trnL-CAA trnL-CAA trnI-CAU trnM-CAU rpl23 rpl2
trnH-GUG trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnD-GUC trnY-GUA trnY-GUA trnE-UUC trnS-UGA trnS-UGA trnM-CAU trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU trnT-UGU ndhJ ndhK ndhC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG trnP-UGG rpl20 rps12 clpP1 rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnM-CAU trnI-CAU trnL-CAA trnL-CAA ndhB rps7 rps12 trnN-GUU trnN-GUU trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
156 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 50 124 75 Locate
trnH-GUG gene − 51 125 75 Locate
psbA gene − 433 1491 1059 Locate
trnK-UUU gene − 1722 4298 2577 Locate
matK gene − 2043 3563 1521 Locate
rps16 gene − 4827 5972 1146 Locate
trnQ-UUG gene − 6913 6985 73 Locate
trnQ-UUG gene − 6914 6985 72 Locate
psbK gene + 7379 7564 186 Locate
psbI gene + 7952 8062 111 Locate
trnS-GCU gene − 8218 8305 88 Locate
trnG-UCC gene + 9071 9830 760 Locate
trnR-UCU gene + 10022 10093 72 Locate
atpA gene − 10197 11720 1524 Locate
atpF gene − 11824 13069 1246 Locate
atpH gene − 13361 13606 246 Locate
atpI gene − 14607 15350 744 Locate
rps2 gene − 15576 16286 711 Locate
rpoC2 gene − 16503 20672 4170 Locate
rpoC1 gene − 20849 23687 2839 Locate
rpoB gene − 23714 26926 3213 Locate
trnC-GCA gene + 28116 28186 71 Locate
trnC-GCA gene + 28116 28196 81 Locate
petN gene + 28349 28438 90 Locate
psbM gene − 29431 29535 105 Locate
trnD-GUC gene − 30052 30128 77 Locate
trnD-GUC gene − 30054 30127 74 Locate
trnY-GUA gene − 30237 30322 86 Locate
trnY-GUA gene − 30238 30321 84 Locate
trnE-UUC gene − 30400 30472 73 Locate
trnT-GGU gene + 31081 31154 74 Locate
trnT-GGU gene + 31082 31153 72 Locate
psbD gene + 32471 33532 1062 Locate
psbC gene + 33516 34901 1386 Locate
trnS-UGA gene − 35139 35230 92 Locate
trnS-UGA gene − 35139 35231 93 Locate
psbZ gene + 35572 35760 189 Locate
trnG-GCC gene + 36005 36075 71 Locate
trnM-CAU gene − 36265 36339 75 Locate
trnfM-CAU gene − 36266 36339 74 Locate
rps14 gene − 36485 36787 303 Locate
psaB gene − 36910 39114 2205 Locate
psaA gene − 39140 41392 2253 Locate
ycf3 gene − 42166 44113 1948 Locate
trnS-GGA gene + 44978 45064 87 Locate
trnS-GGA gene + 44978 45065 88 Locate
rps4 gene − 45361 45966 606 Locate
trnT-UGU gene − 46391 46465 75 Locate
trnT-UGU gene − 46392 46464 73 Locate
trnL-UAA gene + 47152 47695 544 Locate
trnF-GAA gene + 47989 48061 73 Locate
trnF-GAA gene + 47989 48062 74 Locate
ndhJ gene − 48729 49205 477 Locate
ndhK gene − 49310 49987 678 Locate
ndhC gene − 50039 50401 363 Locate
trnM-CAU gene + 52183 52255 73 Locate
trnM-CAU gene + 52184 52255 72 Locate
atpE gene − 52456 52857 402 Locate
atpB gene − 52854 54350 1497 Locate
rbcL gene + 55141 56574 1434 Locate
accD gene + 57279 58760 1482 Locate
psaI gene + 59460 59570 111 Locate
ycf4 gene + 60017 60571 555 Locate
cemA gene + 61161 61850 690 Locate
petA gene + 62065 63027 963 Locate
psbJ gene − 64065 64187 123 Locate
psbL gene − 64322 64438 117 Locate
psbF gene − 64462 64581 120 Locate
psbE gene − 64596 64847 252 Locate
petL gene + 65740 65835 96 Locate
petG gene + 66010 66123 114 Locate
trnW-CCA gene − 66237 66310 74 Locate
trnP-UGG gene − 66477 66552 76 Locate
trnP-UGG gene − 66479 66552 74 Locate
psaJ gene + 66834 66968 135 Locate
rpl33 gene + 67431 67631 201 Locate
rps18 gene + 67798 68103 306 Locate
rpl20 gene − 68337 68723 387 Locate
rps12 gene − 69458 69571 114 Locate
clpP1 gene − 69690 71609 1920 Locate
psbB gene + 72082 73608 1527 Locate
psbT gene + 73793 73894 102 Locate
psbH gene + 74197 74415 219 Locate
petB gene + 74541 75901 1361 Locate
petD gene + 76090 77282 1193 Locate
rpoA gene − 77459 78466 1008 Locate
rps11 gene − 78538 78954 417 Locate
rpl36 gene − 79070 79183 114 Locate
infA gene − 79279 79512 234 Locate
rps8 gene − 79639 80043 405 Locate
rpl14 gene − 80234 80602 369 Locate
rpl16 gene − 80736 82003 1268 Locate
rps3 gene − 82147 82809 663 Locate
rpl22 gene − 82794 83267 474 Locate
rps19 gene − 83332 83610 279 Locate
rpl2 gene − 83678 85156 1479 Locate
rpl23 gene − 85175 85456 282 Locate
trnM-CAU gene − 85621 85695 75 Locate
trnI-CAU gene − 85622 85695 74 Locate
ycf2 gene + 85790 92620 6831 Locate
ycf15 gene + 92810 92959 150 Locate
trnL-CAA gene − 93219 93301 83 Locate
trnL-CAA gene − 93220 93300 81 Locate
ndhB gene − 93872 96079 2208 Locate
rps7 gene − 96350 96817 468 Locate
rps12 gene − 96871 97663 793 Locate
trnV-GAC gene + 99325 99396 72 Locate
rrn16 gene + 99623 101113 1491 Locate
trnI-GAU gene + 101411 102429 1019 Locate
trnA-UGC gene + 102494 103372 879 Locate
rrn23 rRNA + 103544 106155 2612 Locate
rrn23 gene + 103544 106354 2811 Locate
rrn4.5 gene + 106453 106555 103 Locate
rrn5 gene + 106811 106931 121 Locate
trnR-ACG gene + 107175 107248 74 Locate
trnR-ACG gene + 107175 107249 75 Locate
trnN-GUU gene − 107814 107886 73 Locate
trnN-GUU gene − 107814 107887 74 Locate
trnN-GUU gene − 107815 107886 72 Locate
ycf1 gene + 108228 109358 1131 Locate
ndhF gene − 109252 111483 2232 Locate
rpl32 gene + 111952 112122 171 Locate
trnL-UAG gene + 112887 112966 80 Locate
ccsA gene + 113055 114026 972 Locate
ndhD gene − 114258 115787 1530 Locate
psaC gene − 115878 116123 246 Locate
ndhE gene − 116379 116684 306 Locate
ndhG gene − 116899 117429 531 Locate
ndhI gene − 117790 118296 507 Locate
ndhA gene − 118377 120500 2124 Locate
ndhH gene − 120502 121683 1182 Locate
rps15 gene − 121798 122070 273 Locate
ycf1 gene − 122500 128022 5523 Locate
trnN-GUU gene + 128363 128436 74 Locate
trnN-GUU gene + 128364 128435 72 Locate
trnN-GUU gene + 128364 128436 73 Locate
trnR-ACG gene − 129001 129075 75 Locate
trnR-ACG gene − 129002 129075 74 Locate
rrn5 gene − 129319 129439 121 Locate
rrn4.5 gene − 129695 129797 103 Locate
rrn23 gene − 129897 132706 2810 Locate
trnA-UGC gene − 132878 133756 879 Locate
trnI-GAU gene − 133821 134839 1019 Locate
rrn16 gene − 135137 136627 1491 Locate
trnV-GAC gene − 136854 136925 72 Locate
rps12 gene + 138587 139379 793 Locate
rps7 gene + 139433 139900 468 Locate
ndhB gene + 140171 142378 2208 Locate
trnL-CAA gene + 142949 143031 83 Locate
trnL-CAA gene + 142950 143030 81 Locate
ycf15 gene − 143291 143440 150 Locate
ycf2 gene − 143630 150460 6831 Locate
trnI-CAU gene + 150555 150628 74 Locate
trnM-CAU gene + 150555 150629 75 Locate
rpl23 gene + 150794 151075 282 Locate
rpl2 gene + 151094 152572 1479 Locate
Status Available
Accession MW940491.1
Length 152,642 bp
GC content 37.6%
Annotated genes 155
Gene sequence records 0
Translation Rna 59 Photosystem Ii 14 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 9
SSR 0
Direct 0
Inverted 0
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources