Isodon tenuifolius chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · NC_067685.1 · 11–85 bp · −
psbA · NC_067685.1 · 393–1,451 bp · −
trnK-UUU · NC_067685.1 · 1,683–4,260 bp · −
matK · NC_067685.1 · 2,004–3,524 bp · −
ON966_pgp086 · NC_067685.1 · 4,786–5,931 bp · −
trnQ-UUG · NC_067685.1 · 6,871–6,942 bp · −
trnS-GCU · NC_067685.1 · 8,177–8,264 bp · −
atpA · NC_067685.1 · 10,153–11,676 bp · −
atpF · NC_067685.1 · 11,788–13,034 bp · −
atpH · NC_067685.1 · 13,326–13,571 bp · −
atpI · NC_067685.1 · 14,572–15,315 bp · −
rps2 · NC_067685.1 · 15,541–16,251 bp · −
rpoC2 · NC_067685.1 · 16,468–20,649 bp · −
rpoC1 · NC_067685.1 · 20,814–23,647 bp · −
rpoB · NC_067685.1 · 23,674–26,886 bp · −
psbM · NC_067685.1 · 29,389–29,493 bp · −
trnD-GUC · NC_067685.1 · 30,012–30,085 bp · −
trnY-GUA · NC_067685.1 · 30,196–30,279 bp · −
trnE-UUC · NC_067685.1 · 30,357–30,429 bp · −
trnS-UGA · NC_067685.1 · 35,093–35,185 bp · −
trnfM-CAU · NC_067685.1 · 36,217–36,290 bp · −
rps14 · NC_067685.1 · 36,436–36,738 bp · −
psaB · NC_067685.1 · 36,861–39,065 bp · −
psaA · NC_067685.1 · 39,091–41,343 bp · −
ycf3 · NC_067685.1 · 42,112–44,059 bp · −
rps4 · NC_067685.1 · 45,310–45,915 bp · −
trnT-UGU · NC_067685.1 · 46,310–46,382 bp · −
ndhJ · NC_067685.1 · 48,666–49,142 bp · −
ndhK · NC_067685.1 · 49,273–49,950 bp · −
ndhC · NC_067685.1 · 50,002–50,364 bp · −
trnV-UAC · NC_067685.1 · 51,316–51,972 bp · −
atpE · NC_067685.1 · 52,426–52,827 bp · −
atpB · NC_067685.1 · 52,824–54,320 bp · −
psbJ · NC_067685.1 · 64,027–64,149 bp · −
psbL · NC_067685.1 · 64,284–64,400 bp · −
psbF · NC_067685.1 · 64,424–64,543 bp · −
psbE · NC_067685.1 · 64,558–64,809 bp · −
trnW-CCA · NC_067685.1 · 66,208–66,281 bp · −
trnP-UGG · NC_067685.1 · 66,450–66,523 bp · −
rpl20 · NC_067685.1 · 68,310–68,696 bp · −
rps12 · NC_067685.1 · 69,433–69,546 bp · −
rps12 · NC_067685.1 · 96,838–97,630 bp · −
clpP · NC_067685.1 · 69,665–71,581 bp · −
psbN · NC_067685.1 · 73,931–74,062 bp · −
rpoA · NC_067685.1 · 77,430–78,443 bp · −
rps11 · NC_067685.1 · 78,515–78,931 bp · −
rpl36 · NC_067685.1 · 79,047–79,160 bp · −
infA · NC_067685.1 · 79,256–79,489 bp · −
rps8 · NC_067685.1 · 79,615–80,019 bp · −
rpl14 · NC_067685.1 · 80,202–80,570 bp · −
rpl16 · NC_067685.1 · 80,703–81,970 bp · −
rps3 · NC_067685.1 · 82,114–82,776 bp · −
rpl22 · NC_067685.1 · 82,761–83,234 bp · −
rps19 · NC_067685.1 · 83,299–83,577 bp · −
rpl2 · NC_067685.1 · 83,645–85,123 bp · −
rpl23 · NC_067685.1 · 85,142–85,423 bp · −
trnI-CAU · NC_067685.1 · 85,589–85,662 bp · −
trnL-CAA · NC_067685.1 · 93,187–93,267 bp · −
ndhB · NC_067685.1 · 93,839–96,046 bp · −
rps7 · NC_067685.1 · 96,317–96,784 bp · −
trnN-GUU · NC_067685.1 · 107,782–107,853 bp · −
ndhF · NC_067685.1 · 109,219–111,450 bp · −
ndhD · NC_067685.1 · 114,233–115,762 bp · −
psaC · NC_067685.1 · 115,853–116,098 bp · −
ndhE · NC_067685.1 · 116,354–116,659 bp · −
ndhG · NC_067685.1 · 116,874–117,404 bp · −
ndhI · NC_067685.1 · 117,764–118,270 bp · −
ndhA · NC_067685.1 · 118,351–120,474 bp · −
ndhH · NC_067685.1 · 120,476–121,657 bp · −
rps15 · NC_067685.1 · 121,772–122,044 bp · −
ycf1 · NC_067685.1 · 122,474–127,996 bp · −
trnR-ACG · NC_067685.1 · 128,976–129,049 bp · −
rrn5 · NC_067685.1 · 129,293–129,413 bp · −
rrn4.5 · NC_067685.1 · 129,669–129,771 bp · −
rrn23 · NC_067685.1 · 129,870–132,680 bp · −
trnA-UGC · NC_067685.1 · 132,852–133,730 bp · −
trnI-GAU · NC_067685.1 · 133,795–134,813 bp · −
rrn16 · NC_067685.1 · 135,111–136,601 bp · −
trnV-GAC · NC_067685.1 · 136,828–136,899 bp · −
ycf15 · NC_067685.1 · 143,265–143,414 bp · −
ycf2 · NC_067685.1 · 143,604–150,434 bp · −
psbK · NC_067685.1 · 7,336–7,521 bp · +
psbI · NC_067685.1 · 7,910–8,020 bp · +
trnG-UCC · NC_067685.1 · 9,027–9,787 bp · +
trnR-UCU · NC_067685.1 · 9,978–10,049 bp · +
trnC-GCA · NC_067685.1 · 28,075–28,145 bp · +
petN · NC_067685.1 · 28,308–28,397 bp · +
trnT-GGU · NC_067685.1 · 31,039–31,110 bp · +
psbD · NC_067685.1 · 32,428–33,489 bp · +
psbC · NC_067685.1 · 33,437–34,858 bp · +
psbZ · NC_067685.1 · 35,526–35,714 bp · +
trnG-GCC · NC_067685.1 · 35,959–36,029 bp · +
trnS-GGA · NC_067685.1 · 44,923–45,009 bp · +
trnL-UAA · NC_067685.1 · 47,068–47,632 bp · +
trnF-GAA · NC_067685.1 · 47,926–47,998 bp · +
trnM-CAU · NC_067685.1 · 52,153–52,225 bp · +
rbcL · NC_067685.1 · 55,111–56,544 bp · +
accD · NC_067685.1 · 57,243–58,724 bp · +
psaI · NC_067685.1 · 59,424–59,534 bp · +
ycf4 · NC_067685.1 · 59,984–60,538 bp · +
cemA · NC_067685.1 · 61,122–61,811 bp · +
petA · NC_067685.1 · 62,026–62,988 bp · +
petL · NC_067685.1 · 65,702–65,797 bp · +
petG · NC_067685.1 · 65,972–66,085 bp · +
psaJ · NC_067685.1 · 66,805–66,939 bp · +
rpl33 · NC_067685.1 · 67,401–67,601 bp · +
rps18 · NC_067685.1 · 67,768–68,073 bp · +
rps12 · NC_067685.1 · 138,561–139,353 bp · +
psbB · NC_067685.1 · 72,054–73,580 bp · +
psbT · NC_067685.1 · 73,764–73,865 bp · +
psbH · NC_067685.1 · 74,168–74,386 bp · +
petB · NC_067685.1 · 74,512–75,872 bp · +
petD · NC_067685.1 · 76,061–77,253 bp · +
ycf2 · NC_067685.1 · 85,757–92,587 bp · +
ycf15 · NC_067685.1 · 92,777–92,926 bp · +
trnV-GAC · NC_067685.1 · 99,292–99,363 bp · +
rrn16 · NC_067685.1 · 99,590–101,080 bp · +
trnI-GAU · NC_067685.1 · 101,378–102,396 bp · +
trnA-UGC · NC_067685.1 · 102,461–103,339 bp · +
rrn23 · NC_067685.1 · 103,511–106,321 bp · +
rrn4.5 · NC_067685.1 · 106,420–106,522 bp · +
rrn5 · NC_067685.1 · 106,778–106,898 bp · +
trnR-ACG · NC_067685.1 · 107,142–107,215 bp · +
ycf1 · NC_067685.1 · 108,195–109,325 bp · +
rpl32 · NC_067685.1 · 111,926–112,096 bp · +
trnL-UAG · NC_067685.1 · 112,862–112,941 bp · +
ccsA · NC_067685.1 · 113,030–114,001 bp · +
trnN-GUU · NC_067685.1 · 128,338–128,409 bp · +
rps7 · NC_067685.1 · 139,407–139,874 bp · +
ndhB · NC_067685.1 · 140,145–142,352 bp · +
trnL-CAA · NC_067685.1 · 142,924–143,004 bp · +
trnI-CAU · NC_067685.1 · 150,529–150,602 bp · +
rpl23 · NC_067685.1 · 150,768–151,049 bp · +
rpl2 · NC_067685.1 · 151,068–152,546 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Isodon tenuifolius
ANNOTATED PLASTOME
NC_067685.1
152,656 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
ATP synthase
Ribosomal protein
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38164 76328 114492 152656 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG ycf1 rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK ON966_pgp086 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 11 85 75 Locate
psbA gene − 393 1451 1059 Locate
trnK-UUU gene − 1683 4260 2578 Locate
matK gene − 2004 3524 1521 Locate
ON966_pgp086 gene − 4786 5931 1146 Locate
trnQ-UUG gene − 6871 6942 72 Locate
psbK gene + 7336 7521 186 Locate
psbI gene + 7910 8020 111 Locate
trnS-GCU gene − 8177 8264 88 Locate
trnG-UCC gene + 9027 9787 761 Locate
trnR-UCU gene + 9978 10049 72 Locate
atpA gene − 10153 11676 1524 Locate
atpF gene − 11788 13034 1247 Locate
atpH gene − 13326 13571 246 Locate
atpI gene − 14572 15315 744 Locate
rps2 gene − 15541 16251 711 Locate
rpoC2 gene − 16468 20649 4182 Locate
rpoC1 gene − 20814 23647 2834 Locate
rpoB gene − 23674 26886 3213 Locate
trnC-GCA gene + 28075 28145 71 Locate
petN gene + 28308 28397 90 Locate
psbM gene − 29389 29493 105 Locate
trnD-GUC gene − 30012 30085 74 Locate
trnY-GUA gene − 30196 30279 84 Locate
trnE-UUC gene − 30357 30429 73 Locate
trnT-GGU gene + 31039 31110 72 Locate
psbD gene + 32428 33489 1062 Locate
psbC gene + 33437 34858 1422 Locate
trnS-UGA gene − 35093 35185 93 Locate
psbZ gene + 35526 35714 189 Locate
trnG-GCC gene + 35959 36029 71 Locate
trnfM-CAU gene − 36217 36290 74 Locate
rps14 gene − 36436 36738 303 Locate
psaB gene − 36861 39065 2205 Locate
psaA gene − 39091 41343 2253 Locate
ycf3 gene − 42112 44059 1948 Locate
trnS-GGA gene + 44923 45009 87 Locate
rps4 gene − 45310 45915 606 Locate
trnT-UGU gene − 46310 46382 73 Locate
trnL-UAA gene + 47068 47632 565 Locate
trnF-GAA gene + 47926 47998 73 Locate
ndhJ gene − 48666 49142 477 Locate
ndhK gene − 49273 49950 678 Locate
ndhC gene − 50002 50364 363 Locate
trnV-UAC gene − 51316 51972 657 Locate
trnM-CAU gene + 52153 52225 73 Locate
atpE gene − 52426 52827 402 Locate
atpB gene − 52824 54320 1497 Locate
rbcL gene + 55111 56544 1434 Locate
accD gene + 57243 58724 1482 Locate
psaI gene + 59424 59534 111 Locate
ycf4 gene + 59984 60538 555 Locate
cemA gene + 61122 61811 690 Locate
petA gene + 62026 62988 963 Locate
psbJ gene − 64027 64149 123 Locate
psbL gene − 64284 64400 117 Locate
psbF gene − 64424 64543 120 Locate
psbE gene − 64558 64809 252 Locate
petL gene + 65702 65797 96 Locate
petG gene + 65972 66085 114 Locate
trnW-CCA gene − 66208 66281 74 Locate
trnP-UGG gene − 66450 66523 74 Locate
psaJ gene + 66805 66939 135 Locate
rpl33 gene + 67401 67601 201 Locate
rps18 gene + 67768 68073 306 Locate
rpl20 gene − 68310 68696 387 Locate
rps12 gene − 69433 69546 114 Locate
clpP gene − 69665 71581 1917 Locate
psbB gene + 72054 73580 1527 Locate
psbT gene + 73764 73865 102 Locate
psbN gene − 73931 74062 132 Locate
psbH gene + 74168 74386 219 Locate
petB gene + 74512 75872 1361 Locate
petD gene + 76061 77253 1193 Locate
rpoA gene − 77430 78443 1014 Locate
rps11 gene − 78515 78931 417 Locate
rpl36 gene − 79047 79160 114 Locate
infA gene − 79256 79489 234 Locate
rps8 gene − 79615 80019 405 Locate
rpl14 gene − 80202 80570 369 Locate
rpl16 gene − 80703 81970 1268 Locate
rps3 gene − 82114 82776 663 Locate
rpl22 gene − 82761 83234 474 Locate
rps19 gene − 83299 83577 279 Locate
rpl2 gene − 83645 85123 1479 Locate
rpl23 gene − 85142 85423 282 Locate
trnI-CAU gene − 85589 85662 74 Locate
ycf2 gene + 85757 92587 6831 Locate
ycf15 gene + 92777 92926 150 Locate
trnL-CAA gene − 93187 93267 81 Locate
ndhB gene − 93839 96046 2208 Locate
rps7 gene − 96317 96784 468 Locate
rps12 gene − 96838 97630 793 Locate
trnV-GAC gene + 99292 99363 72 Locate
rrn16 gene + 99590 101080 1491 Locate
trnI-GAU gene + 101378 102396 1019 Locate
trnA-UGC gene + 102461 103339 879 Locate
rrn23 gene + 103511 106321 2811 Locate
rrn4.5 gene + 106420 106522 103 Locate
rrn5 gene + 106778 106898 121 Locate
trnR-ACG gene + 107142 107215 74 Locate
trnN-GUU gene − 107782 107853 72 Locate
ycf1 gene + 108195 109325 1131 Locate
ndhF gene − 109219 111450 2232 Locate
rpl32 gene + 111926 112096 171 Locate
trnL-UAG gene + 112862 112941 80 Locate
ccsA gene + 113030 114001 972 Locate
ndhD gene − 114233 115762 1530 Locate
psaC gene − 115853 116098 246 Locate
ndhE gene − 116354 116659 306 Locate
ndhG gene − 116874 117404 531 Locate
ndhI gene − 117764 118270 507 Locate
ndhA gene − 118351 120474 2124 Locate
ndhH gene − 120476 121657 1182 Locate
rps15 gene − 121772 122044 273 Locate
ycf1 gene − 122474 127996 5523 Locate
trnN-GUU gene + 128338 128409 72 Locate
trnR-ACG gene − 128976 129049 74 Locate
rrn5 gene − 129293 129413 121 Locate
rrn4.5 gene − 129669 129771 103 Locate
rrn23 gene − 129870 132680 2811 Locate
trnA-UGC gene − 132852 133730 879 Locate
trnI-GAU gene − 133795 134813 1019 Locate
rrn16 gene − 135111 136601 1491 Locate
trnV-GAC gene − 136828 136899 72 Locate
rps12 gene + 138561 139353 793 Locate
rps7 gene + 139407 139874 468 Locate
ndhB gene + 140145 142352 2208 Locate
trnL-CAA gene + 142924 143004 81 Locate
ycf15 gene − 143265 143414 150 Locate
ycf2 gene − 143604 150434 6831 Locate
trnI-CAU gene + 150529 150602 74 Locate
rpl23 gene + 150768 151049 282 Locate
rpl2 gene + 151068 152546 1479 Locate
Status Available
Accession NC_067685.1
Length 152,656 bp
GC content 37.6%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 16 Atp Synthase 6 Ribosomal Protein 25 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources