Isodon ternifolius chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · NC_067686.1 · 11–85 bp · −
psbA · NC_067686.1 · 403–1,461 bp · −
trnK-UUU · NC_067686.1 · 1,693–4,271 bp · −
matK · NC_067686.1 · 2,013–3,533 bp · −
ON945_pgp086 · NC_067686.1 · 4,798–5,943 bp · −
trnQ-UUG · NC_067686.1 · 6,885–6,956 bp · −
trnS-GCU · NC_067686.1 · 8,183–8,270 bp · −
atpA · NC_067686.1 · 10,155–11,678 bp · −
atpF · NC_067686.1 · 11,782–13,026 bp · −
atpH · NC_067686.1 · 13,318–13,563 bp · −
atpI · NC_067686.1 · 14,582–15,325 bp · −
rps2 · NC_067686.1 · 15,551–16,261 bp · −
rpoC2 · NC_067686.1 · 16,477–20,658 bp · −
rpoC1 · NC_067686.1 · 20,823–23,656 bp · −
rpoB · NC_067686.1 · 23,683–26,895 bp · −
psbM · NC_067686.1 · 29,396–29,500 bp · −
trnD-GUC · NC_067686.1 · 30,019–30,092 bp · −
trnY-GUA · NC_067686.1 · 30,203–30,286 bp · −
trnE-UUC · NC_067686.1 · 30,364–30,436 bp · −
trnS-UGA · NC_067686.1 · 35,151–35,243 bp · −
trnfM-CAU · NC_067686.1 · 36,275–36,348 bp · −
rps14 · NC_067686.1 · 36,494–36,796 bp · −
psaB · NC_067686.1 · 36,927–39,131 bp · −
psaA · NC_067686.1 · 39,157–41,409 bp · −
ycf3 · NC_067686.1 · 42,200–44,149 bp · −
rps4 · NC_067686.1 · 45,368–45,973 bp · −
trnT-UGU · NC_067686.1 · 46,399–46,471 bp · −
ndhJ · NC_067686.1 · 48,771–49,247 bp · −
ndhK · NC_067686.1 · 49,358–50,035 bp · −
ndhC · NC_067686.1 · 50,087–50,449 bp · −
trnV-UAC · NC_067686.1 · 51,397–52,054 bp · −
atpE · NC_067686.1 · 52,508–52,909 bp · −
atpB · NC_067686.1 · 52,906–54,402 bp · −
psbJ · NC_067686.1 · 64,123–64,245 bp · −
psbL · NC_067686.1 · 64,380–64,496 bp · −
psbF · NC_067686.1 · 64,520–64,639 bp · −
psbE · NC_067686.1 · 64,654–64,905 bp · −
trnW-CCA · NC_067686.1 · 66,329–66,402 bp · −
trnP-UGG · NC_067686.1 · 66,571–66,644 bp · −
rpl20 · NC_067686.1 · 68,428–68,814 bp · −
rps12 · NC_067686.1 · 69,546–69,659 bp · −
rps12 · NC_067686.1 · 96,952–97,745 bp · −
clpP · NC_067686.1 · 69,777–71,693 bp · −
psbN · NC_067686.1 · 74,042–74,173 bp · −
rpoA · NC_067686.1 · 77,554–78,561 bp · −
rps11 · NC_067686.1 · 78,626–79,042 bp · −
rpl36 · NC_067686.1 · 79,158–79,271 bp · −
infA · NC_067686.1 · 79,367–79,600 bp · −
rps8 · NC_067686.1 · 79,728–80,132 bp · −
rpl14 · NC_067686.1 · 80,314–80,682 bp · −
rpl16 · NC_067686.1 · 80,816–82,083 bp · −
rps3 · NC_067686.1 · 82,220–82,882 bp · −
rpl22 · NC_067686.1 · 82,867–83,340 bp · −
rps19 · NC_067686.1 · 83,405–83,683 bp · −
rpl2 · NC_067686.1 · 83,750–85,228 bp · −
rpl23 · NC_067686.1 · 85,247–85,528 bp · −
trnI-CAU · NC_067686.1 · 85,694–85,767 bp · −
trnL-CAA · NC_067686.1 · 93,301–93,381 bp · −
ndhB · NC_067686.1 · 93,953–96,160 bp · −
rps7 · NC_067686.1 · 96,431–96,898 bp · −
trnN-GUU · NC_067686.1 · 107,904–107,975 bp · −
ndhF · NC_067686.1 · 109,340–111,571 bp · −
ndhD · NC_067686.1 · 114,366–115,895 bp · −
psaC · NC_067686.1 · 115,986–116,231 bp · −
ndhE · NC_067686.1 · 116,487–116,792 bp · −
ndhG · NC_067686.1 · 117,007–117,537 bp · −
ndhI · NC_067686.1 · 117,899–118,405 bp · −
ndhA · NC_067686.1 · 118,486–120,600 bp · −
ndhH · NC_067686.1 · 120,602–121,783 bp · −
rps15 · NC_067686.1 · 121,898–122,170 bp · −
ycf1 · NC_067686.1 · 122,600–128,149 bp · −
trnR-ACG · NC_067686.1 · 129,133–129,206 bp · −
rrn5 · NC_067686.1 · 129,450–129,570 bp · −
rrn4.5 · NC_067686.1 · 129,826–129,928 bp · −
rrn23 · NC_067686.1 · 130,027–132,837 bp · −
trnA-UGC · NC_067686.1 · 133,009–133,887 bp · −
trnI-GAU · NC_067686.1 · 133,952–134,970 bp · −
rrn16 · NC_067686.1 · 135,268–136,758 bp · −
trnV-GAC · NC_067686.1 · 136,985–137,056 bp · −
ycf15 · NC_067686.1 · 143,425–143,574 bp · −
ycf2 · NC_067686.1 · 143,764–150,603 bp · −
psbK · NC_067686.1 · 7,344–7,529 bp · +
psbI · NC_067686.1 · 7,919–8,029 bp · +
trnG-UCC · NC_067686.1 · 9,028–9,788 bp · +
trnR-UCU · NC_067686.1 · 9,979–10,050 bp · +
trnC-GCA · NC_067686.1 · 28,085–28,155 bp · +
petN · NC_067686.1 · 28,318–28,407 bp · +
trnT-GGU · NC_067686.1 · 31,082–31,153 bp · +
psbD · NC_067686.1 · 32,481–33,542 bp · +
psbC · NC_067686.1 · 33,490–34,911 bp · +
psbZ · NC_067686.1 · 35,584–35,772 bp · +
trnG-GCC · NC_067686.1 · 36,017–36,087 bp · +
trnS-GGA · NC_067686.1 · 44,985–45,071 bp · +
trnL-UAA · NC_067686.1 · 47,165–47,729 bp · +
trnF-GAA · NC_067686.1 · 48,023–48,095 bp · +
trnM-CAU · NC_067686.1 · 52,235–52,307 bp · +
rbcL · NC_067686.1 · 55,201–56,634 bp · +
accD · NC_067686.1 · 57,347–58,828 bp · +
psaI · NC_067686.1 · 59,528–59,638 bp · +
ycf4 · NC_067686.1 · 60,089–60,643 bp · +
cemA · NC_067686.1 · 61,234–61,923 bp · +
petA · NC_067686.1 · 62,138–63,100 bp · +
petL · NC_067686.1 · 65,823–65,918 bp · +
petG · NC_067686.1 · 66,093–66,206 bp · +
psaJ · NC_067686.1 · 66,927–67,061 bp · +
rpl33 · NC_067686.1 · 67,521–67,721 bp · +
rps18 · NC_067686.1 · 67,888–68,193 bp · +
rps12 · NC_067686.1 · 138,720–139,513 bp · +
psbB · NC_067686.1 · 72,166–73,692 bp · +
psbT · NC_067686.1 · 73,875–73,976 bp · +
psbH · NC_067686.1 · 74,279–74,497 bp · +
petB · NC_067686.1 · 74,623–75,996 bp · +
petD · NC_067686.1 · 76,185–77,377 bp · +
ycf2 · NC_067686.1 · 85,862–92,701 bp · +
ycf15 · NC_067686.1 · 92,891–93,040 bp · +
trnV-GAC · NC_067686.1 · 99,409–99,480 bp · +
rrn16 · NC_067686.1 · 99,707–101,197 bp · +
trnI-GAU · NC_067686.1 · 101,495–102,513 bp · +
trnA-UGC · NC_067686.1 · 102,578–103,456 bp · +
rrn23 · NC_067686.1 · 103,628–106,438 bp · +
rrn4.5 · NC_067686.1 · 106,537–106,639 bp · +
rrn5 · NC_067686.1 · 106,895–107,015 bp · +
trnR-ACG · NC_067686.1 · 107,259–107,332 bp · +
ycf1 · NC_067686.1 · 108,316–109,446 bp · +
rpl32 · NC_067686.1 · 112,046–112,216 bp · +
trnL-UAG · NC_067686.1 · 112,978–113,057 bp · +
ccsA · NC_067686.1 · 113,146–114,117 bp · +
trnN-GUU · NC_067686.1 · 128,490–128,561 bp · +
rps7 · NC_067686.1 · 139,567–140,034 bp · +
ndhB · NC_067686.1 · 140,305–142,512 bp · +
trnL-CAA · NC_067686.1 · 143,084–143,164 bp · +
trnI-CAU · NC_067686.1 · 150,698–150,771 bp · +
rpl23 · NC_067686.1 · 150,937–151,218 bp · +
rpl2 · NC_067686.1 · 151,237–152,715 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Isodon ternifolius
ANNOTATED PLASTOME
NC_067686.1
152,824 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
ATP synthase
Ribosomal protein
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38206 76412 114618 152824 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG ycf1 rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK ON945_pgp086 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 11 85 75 Locate
psbA gene − 403 1461 1059 Locate
trnK-UUU gene − 1693 4271 2579 Locate
matK gene − 2013 3533 1521 Locate
ON945_pgp086 gene − 4798 5943 1146 Locate
trnQ-UUG gene − 6885 6956 72 Locate
psbK gene + 7344 7529 186 Locate
psbI gene + 7919 8029 111 Locate
trnS-GCU gene − 8183 8270 88 Locate
trnG-UCC gene + 9028 9788 761 Locate
trnR-UCU gene + 9979 10050 72 Locate
atpA gene − 10155 11678 1524 Locate
atpF gene − 11782 13026 1245 Locate
atpH gene − 13318 13563 246 Locate
atpI gene − 14582 15325 744 Locate
rps2 gene − 15551 16261 711 Locate
rpoC2 gene − 16477 20658 4182 Locate
rpoC1 gene − 20823 23656 2834 Locate
rpoB gene − 23683 26895 3213 Locate
trnC-GCA gene + 28085 28155 71 Locate
petN gene + 28318 28407 90 Locate
psbM gene − 29396 29500 105 Locate
trnD-GUC gene − 30019 30092 74 Locate
trnY-GUA gene − 30203 30286 84 Locate
trnE-UUC gene − 30364 30436 73 Locate
trnT-GGU gene + 31082 31153 72 Locate
psbD gene + 32481 33542 1062 Locate
psbC gene + 33490 34911 1422 Locate
trnS-UGA gene − 35151 35243 93 Locate
psbZ gene + 35584 35772 189 Locate
trnG-GCC gene + 36017 36087 71 Locate
trnfM-CAU gene − 36275 36348 74 Locate
rps14 gene − 36494 36796 303 Locate
psaB gene − 36927 39131 2205 Locate
psaA gene − 39157 41409 2253 Locate
ycf3 gene − 42200 44149 1950 Locate
trnS-GGA gene + 44985 45071 87 Locate
rps4 gene − 45368 45973 606 Locate
trnT-UGU gene − 46399 46471 73 Locate
trnL-UAA gene + 47165 47729 565 Locate
trnF-GAA gene + 48023 48095 73 Locate
ndhJ gene − 48771 49247 477 Locate
ndhK gene − 49358 50035 678 Locate
ndhC gene − 50087 50449 363 Locate
trnV-UAC gene − 51397 52054 658 Locate
trnM-CAU gene + 52235 52307 73 Locate
atpE gene − 52508 52909 402 Locate
atpB gene − 52906 54402 1497 Locate
rbcL gene + 55201 56634 1434 Locate
accD gene + 57347 58828 1482 Locate
psaI gene + 59528 59638 111 Locate
ycf4 gene + 60089 60643 555 Locate
cemA gene + 61234 61923 690 Locate
petA gene + 62138 63100 963 Locate
psbJ gene − 64123 64245 123 Locate
psbL gene − 64380 64496 117 Locate
psbF gene − 64520 64639 120 Locate
psbE gene − 64654 64905 252 Locate
petL gene + 65823 65918 96 Locate
petG gene + 66093 66206 114 Locate
trnW-CCA gene − 66329 66402 74 Locate
trnP-UGG gene − 66571 66644 74 Locate
psaJ gene + 66927 67061 135 Locate
rpl33 gene + 67521 67721 201 Locate
rps18 gene + 67888 68193 306 Locate
rpl20 gene − 68428 68814 387 Locate
rps12 gene − 69546 69659 114 Locate
clpP gene − 69777 71693 1917 Locate
psbB gene + 72166 73692 1527 Locate
psbT gene + 73875 73976 102 Locate
psbN gene − 74042 74173 132 Locate
psbH gene + 74279 74497 219 Locate
petB gene + 74623 75996 1374 Locate
petD gene + 76185 77377 1193 Locate
rpoA gene − 77554 78561 1008 Locate
rps11 gene − 78626 79042 417 Locate
rpl36 gene − 79158 79271 114 Locate
infA gene − 79367 79600 234 Locate
rps8 gene − 79728 80132 405 Locate
rpl14 gene − 80314 80682 369 Locate
rpl16 gene − 80816 82083 1268 Locate
rps3 gene − 82220 82882 663 Locate
rpl22 gene − 82867 83340 474 Locate
rps19 gene − 83405 83683 279 Locate
rpl2 gene − 83750 85228 1479 Locate
rpl23 gene − 85247 85528 282 Locate
trnI-CAU gene − 85694 85767 74 Locate
ycf2 gene + 85862 92701 6840 Locate
ycf15 gene + 92891 93040 150 Locate
trnL-CAA gene − 93301 93381 81 Locate
ndhB gene − 93953 96160 2208 Locate
rps7 gene − 96431 96898 468 Locate
rps12 gene − 96952 97745 794 Locate
trnV-GAC gene + 99409 99480 72 Locate
rrn16 gene + 99707 101197 1491 Locate
trnI-GAU gene + 101495 102513 1019 Locate
trnA-UGC gene + 102578 103456 879 Locate
rrn23 gene + 103628 106438 2811 Locate
rrn4.5 gene + 106537 106639 103 Locate
rrn5 gene + 106895 107015 121 Locate
trnR-ACG gene + 107259 107332 74 Locate
trnN-GUU gene − 107904 107975 72 Locate
ycf1 gene + 108316 109446 1131 Locate
ndhF gene − 109340 111571 2232 Locate
rpl32 gene + 112046 112216 171 Locate
trnL-UAG gene + 112978 113057 80 Locate
ccsA gene + 113146 114117 972 Locate
ndhD gene − 114366 115895 1530 Locate
psaC gene − 115986 116231 246 Locate
ndhE gene − 116487 116792 306 Locate
ndhG gene − 117007 117537 531 Locate
ndhI gene − 117899 118405 507 Locate
ndhA gene − 118486 120600 2115 Locate
ndhH gene − 120602 121783 1182 Locate
rps15 gene − 121898 122170 273 Locate
ycf1 gene − 122600 128149 5550 Locate
trnN-GUU gene + 128490 128561 72 Locate
trnR-ACG gene − 129133 129206 74 Locate
rrn5 gene − 129450 129570 121 Locate
rrn4.5 gene − 129826 129928 103 Locate
rrn23 gene − 130027 132837 2811 Locate
trnA-UGC gene − 133009 133887 879 Locate
trnI-GAU gene − 133952 134970 1019 Locate
rrn16 gene − 135268 136758 1491 Locate
trnV-GAC gene − 136985 137056 72 Locate
rps12 gene + 138720 139513 794 Locate
rps7 gene + 139567 140034 468 Locate
ndhB gene + 140305 142512 2208 Locate
trnL-CAA gene + 143084 143164 81 Locate
ycf15 gene − 143425 143574 150 Locate
ycf2 gene − 143764 150603 6840 Locate
trnI-CAU gene + 150698 150771 74 Locate
rpl23 gene + 150937 151218 282 Locate
rpl2 gene + 151237 152715 1479 Locate
Status Available
Accession NC_067686.1
Length 152,824 bp
GC content 37.6%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 16 Atp Synthase 6 Ribosomal Protein 25 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources