Isodon trichocarpus chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · NC_067693.1 · 11–85 bp · −
psbA · NC_067693.1 · 397–1,455 bp · −
trnK-UUU · NC_067693.1 · 1,687–4,267 bp · −
matK · NC_067693.1 · 2,007–3,527 bp · −
OOB84_pgp086 · NC_067693.1 · 4,794–5,939 bp · −
trnQ-UUG · NC_067693.1 · 6,885–6,956 bp · −
trnS-GCU · NC_067693.1 · 8,190–8,277 bp · −
atpA · NC_067693.1 · 10,164–11,687 bp · −
atpF · NC_067693.1 · 11,796–13,042 bp · −
atpH · NC_067693.1 · 13,334–13,579 bp · −
atpI · NC_067693.1 · 14,580–15,323 bp · −
rps2 · NC_067693.1 · 15,554–16,264 bp · −
rpoC2 · NC_067693.1 · 16,482–20,663 bp · −
rpoC1 · NC_067693.1 · 20,828–23,661 bp · −
rpoB · NC_067693.1 · 23,688–26,900 bp · −
psbM · NC_067693.1 · 28,938–29,042 bp · −
trnD-GUC · NC_067693.1 · 29,553–29,626 bp · −
trnY-GUA · NC_067693.1 · 29,737–29,820 bp · −
trnE-UUC · NC_067693.1 · 29,898–29,970 bp · −
trnS-UGA · NC_067693.1 · 34,638–34,730 bp · −
trnfM-CAU · NC_067693.1 · 35,763–35,836 bp · −
rps14 · NC_067693.1 · 35,982–36,284 bp · −
psaB · NC_067693.1 · 36,407–38,611 bp · −
psaA · NC_067693.1 · 38,637–40,889 bp · −
ycf3 · NC_067693.1 · 41,665–43,612 bp · −
rps4 · NC_067693.1 · 44,857–45,462 bp · −
trnT-UGU · NC_067693.1 · 45,887–45,959 bp · −
ndhJ · NC_067693.1 · 48,243–48,719 bp · −
ndhK · NC_067693.1 · 48,830–49,507 bp · −
ndhC · NC_067693.1 · 49,559–49,921 bp · −
trnV-UAC · NC_067693.1 · 50,878–51,533 bp · −
atpE · NC_067693.1 · 51,987–52,388 bp · −
atpB · NC_067693.1 · 52,385–53,881 bp · −
psbJ · NC_067693.1 · 63,599–63,721 bp · −
psbL · NC_067693.1 · 63,856–63,972 bp · −
psbF · NC_067693.1 · 63,996–64,115 bp · −
psbE · NC_067693.1 · 64,130–64,381 bp · −
trnW-CCA · NC_067693.1 · 65,779–65,852 bp · −
trnP-UGG · NC_067693.1 · 66,021–66,094 bp · −
rpl20 · NC_067693.1 · 67,941–68,327 bp · −
rps12 · NC_067693.1 · 69,060–69,173 bp · −
rps12 · NC_067693.1 · 96,489–97,281 bp · −
clpP · NC_067693.1 · 69,292–71,228 bp · −
psbN · NC_067693.1 · 73,579–73,710 bp · −
rpoA · NC_067693.1 · 77,084–78,091 bp · −
rps11 · NC_067693.1 · 78,164–78,580 bp · −
rpl36 · NC_067693.1 · 78,696–78,809 bp · −
infA · NC_067693.1 · 78,905–79,138 bp · −
rps8 · NC_067693.1 · 79,265–79,669 bp · −
rpl14 · NC_067693.1 · 79,852–80,220 bp · −
rpl16 · NC_067693.1 · 80,354–81,621 bp · −
rps3 · NC_067693.1 · 81,765–82,427 bp · −
rpl22 · NC_067693.1 · 82,412–82,885 bp · −
rps19 · NC_067693.1 · 82,950–83,228 bp · −
rpl2 · NC_067693.1 · 83,296–84,774 bp · −
rpl23 · NC_067693.1 · 84,793–85,074 bp · −
trnI-CAU · NC_067693.1 · 85,240–85,313 bp · −
trnL-CAA · NC_067693.1 · 92,838–92,918 bp · −
ndhB · NC_067693.1 · 93,490–95,697 bp · −
rps7 · NC_067693.1 · 95,968–96,435 bp · −
trnN-GUU · NC_067693.1 · 107,433–107,504 bp · −
ndhF · NC_067693.1 · 108,870–111,101 bp · −
ndhD · NC_067693.1 · 113,877–115,406 bp · −
psaC · NC_067693.1 · 115,497–115,742 bp · −
ndhE · NC_067693.1 · 115,998–116,303 bp · −
ndhG · NC_067693.1 · 116,518–117,048 bp · −
ndhI · NC_067693.1 · 117,407–117,913 bp · −
ndhA · NC_067693.1 · 117,994–120,117 bp · −
ndhH · NC_067693.1 · 120,119–121,300 bp · −
rps15 · NC_067693.1 · 121,415–121,687 bp · −
ycf1 · NC_067693.1 · 122,117–127,639 bp · −
trnR-ACG · NC_067693.1 · 128,619–128,692 bp · −
rrn5 · NC_067693.1 · 128,936–129,056 bp · −
rrn4.5 · NC_067693.1 · 129,312–129,414 bp · −
rrn23 · NC_067693.1 · 129,513–132,323 bp · −
trnA-UGC · NC_067693.1 · 132,495–133,373 bp · −
trnI-GAU · NC_067693.1 · 133,438–134,456 bp · −
rrn16 · NC_067693.1 · 134,754–136,244 bp · −
trnV-GAC · NC_067693.1 · 136,471–136,542 bp · −
ycf15 · NC_067693.1 · 142,908–143,057 bp · −
ycf2 · NC_067693.1 · 143,247–150,077 bp · −
psbK · NC_067693.1 · 7,350–7,535 bp · +
psbI · NC_067693.1 · 7,923–8,033 bp · +
trnG-UCC · NC_067693.1 · 9,039–9,798 bp · +
trnR-UCU · NC_067693.1 · 9,989–10,060 bp · +
trnC-GCA · NC_067693.1 · 28,089–28,159 bp · +
petN · NC_067693.1 · 28,322–28,411 bp · +
trnT-GGU · NC_067693.1 · 30,580–30,651 bp · +
psbD · NC_067693.1 · 31,970–33,031 bp · +
psbC · NC_067693.1 · 32,979–34,400 bp · +
psbZ · NC_067693.1 · 35,071–35,259 bp · +
trnG-GCC · NC_067693.1 · 35,504–35,574 bp · +
trnS-GGA · NC_067693.1 · 44,474–44,560 bp · +
trnL-UAA · NC_067693.1 · 46,645–47,209 bp · +
trnF-GAA · NC_067693.1 · 47,503–47,575 bp · +
trnM-CAU · NC_067693.1 · 51,714–51,786 bp · +
rbcL · NC_067693.1 · 54,672–56,105 bp · +
accD · NC_067693.1 · 56,810–58,291 bp · +
psaI · NC_067693.1 · 58,992–59,102 bp · +
ycf4 · NC_067693.1 · 59,550–60,104 bp · +
cemA · NC_067693.1 · 60,695–61,384 bp · +
petA · NC_067693.1 · 61,599–62,561 bp · +
petL · NC_067693.1 · 65,273–65,368 bp · +
petG · NC_067693.1 · 65,543–65,656 bp · +
psaJ · NC_067693.1 · 66,376–66,510 bp · +
rpl33 · NC_067693.1 · 67,034–67,234 bp · +
rps18 · NC_067693.1 · 67,401–67,706 bp · +
rps12 · NC_067693.1 · 138,204–138,996 bp · +
psbB · NC_067693.1 · 71,701–73,227 bp · +
psbT · NC_067693.1 · 73,412–73,513 bp · +
psbH · NC_067693.1 · 73,816–74,034 bp · +
petB · NC_067693.1 · 74,160–75,526 bp · +
petD · NC_067693.1 · 75,715–76,907 bp · +
ycf2 · NC_067693.1 · 85,408–92,238 bp · +
ycf15 · NC_067693.1 · 92,428–92,577 bp · +
trnV-GAC · NC_067693.1 · 98,943–99,014 bp · +
rrn16 · NC_067693.1 · 99,241–100,731 bp · +
trnI-GAU · NC_067693.1 · 101,029–102,047 bp · +
trnA-UGC · NC_067693.1 · 102,112–102,990 bp · +
rrn23 · NC_067693.1 · 103,162–105,972 bp · +
rrn4.5 · NC_067693.1 · 106,071–106,173 bp · +
rrn5 · NC_067693.1 · 106,429–106,549 bp · +
trnR-ACG · NC_067693.1 · 106,793–106,866 bp · +
ycf1 · NC_067693.1 · 107,846–108,976 bp · +
rpl32 · NC_067693.1 · 111,570–111,740 bp · +
trnL-UAG · NC_067693.1 · 112,506–112,585 bp · +
ccsA · NC_067693.1 · 112,674–113,645 bp · +
trnN-GUU · NC_067693.1 · 127,981–128,052 bp · +
rps7 · NC_067693.1 · 139,050–139,517 bp · +
ndhB · NC_067693.1 · 139,788–141,995 bp · +
trnL-CAA · NC_067693.1 · 142,567–142,647 bp · +
trnI-CAU · NC_067693.1 · 150,172–150,245 bp · +
rpl23 · NC_067693.1 · 150,411–150,692 bp · +
rpl2 · NC_067693.1 · 150,711–152,189 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Isodon trichocarpus
ANNOTATED PLASTOME
NC_067693.1
152,299 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
ATP synthase
Ribosomal protein
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38075 76150 114224 152299 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG ycf1 rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK OOB84_pgp086 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 11 85 75 Locate
psbA gene − 397 1455 1059 Locate
trnK-UUU gene − 1687 4267 2581 Locate
matK gene − 2007 3527 1521 Locate
OOB84_pgp086 gene − 4794 5939 1146 Locate
trnQ-UUG gene − 6885 6956 72 Locate
psbK gene + 7350 7535 186 Locate
psbI gene + 7923 8033 111 Locate
trnS-GCU gene − 8190 8277 88 Locate
trnG-UCC gene + 9039 9798 760 Locate
trnR-UCU gene + 9989 10060 72 Locate
atpA gene − 10164 11687 1524 Locate
atpF gene − 11796 13042 1247 Locate
atpH gene − 13334 13579 246 Locate
atpI gene − 14580 15323 744 Locate
rps2 gene − 15554 16264 711 Locate
rpoC2 gene − 16482 20663 4182 Locate
rpoC1 gene − 20828 23661 2834 Locate
rpoB gene − 23688 26900 3213 Locate
trnC-GCA gene + 28089 28159 71 Locate
petN gene + 28322 28411 90 Locate
psbM gene − 28938 29042 105 Locate
trnD-GUC gene − 29553 29626 74 Locate
trnY-GUA gene − 29737 29820 84 Locate
trnE-UUC gene − 29898 29970 73 Locate
trnT-GGU gene + 30580 30651 72 Locate
psbD gene + 31970 33031 1062 Locate
psbC gene + 32979 34400 1422 Locate
trnS-UGA gene − 34638 34730 93 Locate
psbZ gene + 35071 35259 189 Locate
trnG-GCC gene + 35504 35574 71 Locate
trnfM-CAU gene − 35763 35836 74 Locate
rps14 gene − 35982 36284 303 Locate
psaB gene − 36407 38611 2205 Locate
psaA gene − 38637 40889 2253 Locate
ycf3 gene − 41665 43612 1948 Locate
trnS-GGA gene + 44474 44560 87 Locate
rps4 gene − 44857 45462 606 Locate
trnT-UGU gene − 45887 45959 73 Locate
trnL-UAA gene + 46645 47209 565 Locate
trnF-GAA gene + 47503 47575 73 Locate
ndhJ gene − 48243 48719 477 Locate
ndhK gene − 48830 49507 678 Locate
ndhC gene − 49559 49921 363 Locate
trnV-UAC gene − 50878 51533 656 Locate
trnM-CAU gene + 51714 51786 73 Locate
atpE gene − 51987 52388 402 Locate
atpB gene − 52385 53881 1497 Locate
rbcL gene + 54672 56105 1434 Locate
accD gene + 56810 58291 1482 Locate
psaI gene + 58992 59102 111 Locate
ycf4 gene + 59550 60104 555 Locate
cemA gene + 60695 61384 690 Locate
petA gene + 61599 62561 963 Locate
psbJ gene − 63599 63721 123 Locate
psbL gene − 63856 63972 117 Locate
psbF gene − 63996 64115 120 Locate
psbE gene − 64130 64381 252 Locate
petL gene + 65273 65368 96 Locate
petG gene + 65543 65656 114 Locate
trnW-CCA gene − 65779 65852 74 Locate
trnP-UGG gene − 66021 66094 74 Locate
psaJ gene + 66376 66510 135 Locate
rpl33 gene + 67034 67234 201 Locate
rps18 gene + 67401 67706 306 Locate
rpl20 gene − 67941 68327 387 Locate
rps12 gene − 69060 69173 114 Locate
clpP gene − 69292 71228 1937 Locate
psbB gene + 71701 73227 1527 Locate
psbT gene + 73412 73513 102 Locate
psbN gene − 73579 73710 132 Locate
psbH gene + 73816 74034 219 Locate
petB gene + 74160 75526 1367 Locate
petD gene + 75715 76907 1193 Locate
rpoA gene − 77084 78091 1008 Locate
rps11 gene − 78164 78580 417 Locate
rpl36 gene − 78696 78809 114 Locate
infA gene − 78905 79138 234 Locate
rps8 gene − 79265 79669 405 Locate
rpl14 gene − 79852 80220 369 Locate
rpl16 gene − 80354 81621 1268 Locate
rps3 gene − 81765 82427 663 Locate
rpl22 gene − 82412 82885 474 Locate
rps19 gene − 82950 83228 279 Locate
rpl2 gene − 83296 84774 1479 Locate
rpl23 gene − 84793 85074 282 Locate
trnI-CAU gene − 85240 85313 74 Locate
ycf2 gene + 85408 92238 6831 Locate
ycf15 gene + 92428 92577 150 Locate
trnL-CAA gene − 92838 92918 81 Locate
ndhB gene − 93490 95697 2208 Locate
rps7 gene − 95968 96435 468 Locate
rps12 gene − 96489 97281 793 Locate
trnV-GAC gene + 98943 99014 72 Locate
rrn16 gene + 99241 100731 1491 Locate
trnI-GAU gene + 101029 102047 1019 Locate
trnA-UGC gene + 102112 102990 879 Locate
rrn23 gene + 103162 105972 2811 Locate
rrn4.5 gene + 106071 106173 103 Locate
rrn5 gene + 106429 106549 121 Locate
trnR-ACG gene + 106793 106866 74 Locate
trnN-GUU gene − 107433 107504 72 Locate
ycf1 gene + 107846 108976 1131 Locate
ndhF gene − 108870 111101 2232 Locate
rpl32 gene + 111570 111740 171 Locate
trnL-UAG gene + 112506 112585 80 Locate
ccsA gene + 112674 113645 972 Locate
ndhD gene − 113877 115406 1530 Locate
psaC gene − 115497 115742 246 Locate
ndhE gene − 115998 116303 306 Locate
ndhG gene − 116518 117048 531 Locate
ndhI gene − 117407 117913 507 Locate
ndhA gene − 117994 120117 2124 Locate
ndhH gene − 120119 121300 1182 Locate
rps15 gene − 121415 121687 273 Locate
ycf1 gene − 122117 127639 5523 Locate
trnN-GUU gene + 127981 128052 72 Locate
trnR-ACG gene − 128619 128692 74 Locate
rrn5 gene − 128936 129056 121 Locate
rrn4.5 gene − 129312 129414 103 Locate
rrn23 gene − 129513 132323 2811 Locate
trnA-UGC gene − 132495 133373 879 Locate
trnI-GAU gene − 133438 134456 1019 Locate
rrn16 gene − 134754 136244 1491 Locate
trnV-GAC gene − 136471 136542 72 Locate
rps12 gene + 138204 138996 793 Locate
rps7 gene + 139050 139517 468 Locate
ndhB gene + 139788 141995 2208 Locate
trnL-CAA gene + 142567 142647 81 Locate
ycf15 gene − 142908 143057 150 Locate
ycf2 gene − 143247 150077 6831 Locate
trnI-CAU gene + 150172 150245 74 Locate
rpl23 gene + 150411 150692 282 Locate
rpl2 gene + 150711 152189 1479 Locate
Status Available
Accession NC_067693.1
Length 152,299 bp
GC content 37.6%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 16 Atp Synthase 6 Ribosomal Protein 25 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources