Isodon umbrosus var. leucanthus chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · ON858906.1 · 11–85 bp · −
psbA · ON858906.1 · 393–1,451 bp · −
trnK-UUU · ON858906.1 · 1,683–4,263 bp · −
matK · ON858906.1 · 2,003–3,523 bp · −
trnQ-UUG · ON858906.1 · 6,880–6,951 bp · −
trnS-GCU · ON858906.1 · 8,183–8,270 bp · −
atpA · ON858906.1 · 10,162–11,685 bp · −
atpF · ON858906.1 · 11,788–13,033 bp · −
atpH · ON858906.1 · 13,325–13,570 bp · −
atpI · ON858906.1 · 14,564–15,307 bp · −
rps2 · ON858906.1 · 15,533–16,243 bp · −
rpoC2 · ON858906.1 · 16,458–20,639 bp · −
rpoC1 · ON858906.1 · 20,804–23,637 bp · −
rpoB · ON858906.1 · 23,664–26,876 bp · −
psbM · ON858906.1 · 29,390–29,494 bp · −
trnD-GUC · ON858906.1 · 30,013–30,086 bp · −
trnY-GUA · ON858906.1 · 30,197–30,280 bp · −
trnE-UUC · ON858906.1 · 30,358–30,430 bp · −
trnS-UGA · ON858906.1 · 35,097–35,189 bp · −
trnfM-CAU · ON858906.1 · 36,229–36,302 bp · −
rps14 · ON858906.1 · 36,448–36,750 bp · −
psaB · ON858906.1 · 36,873–39,077 bp · −
psaA · ON858906.1 · 39,103–41,355 bp · −
ycf3 · ON858906.1 · 42,122–44,069 bp · −
rps4 · ON858906.1 · 45,316–45,921 bp · −
trnT-UGU · ON858906.1 · 46,350–46,422 bp · −
ndhJ · ON858906.1 · 48,699–49,175 bp · −
ndhK · ON858906.1 · 49,286–49,963 bp · −
ndhC · ON858906.1 · 50,015–50,377 bp · −
trnV-UAC · ON858906.1 · 51,334–51,990 bp · −
atpE · ON858906.1 · 52,444–52,845 bp · −
atpB · ON858906.1 · 52,842–54,338 bp · −
psbJ · ON858906.1 · 64,063–64,185 bp · −
psbL · ON858906.1 · 64,320–64,436 bp · −
psbF · ON858906.1 · 64,460–64,579 bp · −
psbE · ON858906.1 · 64,594–64,845 bp · −
trnW-CCA · ON858906.1 · 66,244–66,317 bp · −
trnP-UGG · ON858906.1 · 66,486–66,559 bp · −
rpl20 · ON858906.1 · 68,345–68,731 bp · −
rps12 · ON858906.1 · 69,463–69,576 bp · −
rps12 · ON858906.1 · 96,868–97,660 bp · −
clpP · ON858906.1 · 69,695–71,609 bp · −
psbN · ON858906.1 · 73,960–74,091 bp · −
rpoA · ON858906.1 · 77,464–78,471 bp · −
rps11 · ON858906.1 · 78,543–78,959 bp · −
rpl36 · ON858906.1 · 79,075–79,188 bp · −
infA · ON858906.1 · 79,284–79,517 bp · −
rps8 · ON858906.1 · 79,644–80,048 bp · −
rpl14 · ON858906.1 · 80,231–80,599 bp · −
rpl16 · ON858906.1 · 80,733–82,000 bp · −
rps3 · ON858906.1 · 82,144–82,806 bp · −
rpl22 · ON858906.1 · 82,791–83,264 bp · −
rps19 · ON858906.1 · 83,329–83,607 bp · −
rpl2 · ON858906.1 · 83,675–85,153 bp · −
rpl23 · ON858906.1 · 85,172–85,453 bp · −
trnI-CAU · ON858906.1 · 85,619–85,692 bp · −
trnL-CAA · ON858906.1 · 93,217–93,297 bp · −
ndhB · ON858906.1 · 93,869–96,076 bp · −
rps7 · ON858906.1 · 96,347–96,814 bp · −
trnN-GUU · ON858906.1 · 107,814–107,885 bp · −
ndhF · ON858906.1 · 109,251–111,482 bp · −
ndhD · ON858906.1 · 114,257–115,786 bp · −
psaC · ON858906.1 · 115,877–116,122 bp · −
ndhE · ON858906.1 · 116,378–116,683 bp · −
ndhG · ON858906.1 · 116,898–117,428 bp · −
ndhI · ON858906.1 · 117,788–118,294 bp · −
ndhA · ON858906.1 · 118,375–120,498 bp · −
ndhH · ON858906.1 · 120,500–121,681 bp · −
rps15 · ON858906.1 · 121,796–122,068 bp · −
ycf1 · ON858906.1 · 122,498–128,020 bp · −
trnR-ACG · ON858906.1 · 129,001–129,074 bp · −
rrn5 · ON858906.1 · 129,318–129,438 bp · −
rrn4.5 · ON858906.1 · 129,694–129,796 bp · −
rrn23 · ON858906.1 · 129,895–132,705 bp · −
trnA-UGC · ON858906.1 · 132,877–133,755 bp · −
trnI-GAU · ON858906.1 · 133,820–134,838 bp · −
rrn16 · ON858906.1 · 135,136–136,626 bp · −
trnV-GAC · ON858906.1 · 136,853–136,924 bp · −
ycf15 · ON858906.1 · 143,291–143,440 bp · −
ycf2 · ON858906.1 · 143,630–150,460 bp · −
psbK · ON858906.1 · 7,345–7,530 bp · +
psbI · ON858906.1 · 7,918–8,028 bp · +
trnG-UCC · ON858906.1 · 9,038–9,796 bp · +
trnR-UCU · ON858906.1 · 9,987–10,058 bp · +
trnC-GCA · ON858906.1 · 28,066–28,136 bp · +
petN · ON858906.1 · 28,299–28,388 bp · +
trnT-GGU · ON858906.1 · 31,041–31,112 bp · +
psbD · ON858906.1 · 32,430–33,491 bp · +
psbC · ON858906.1 · 33,439–34,860 bp · +
psbZ · ON858906.1 · 35,530–35,718 bp · +
trnG-GCC · ON858906.1 · 35,963–36,039 bp · +
trnS-GGA · ON858906.1 · 44,933–45,019 bp · +
trnL-UAA · ON858906.1 · 47,101–47,665 bp · +
trnF-GAA · ON858906.1 · 47,959–48,031 bp · +
trnM-CAU · ON858906.1 · 52,171–52,243 bp · +
rbcL · ON858906.1 · 55,130–56,563 bp · +
accD · ON858906.1 · 57,273–58,754 bp · +
psaI · ON858906.1 · 59,456–59,566 bp · +
ycf4 · ON858906.1 · 60,013–60,567 bp · +
cemA · ON858906.1 · 61,158–61,847 bp · +
petA · ON858906.1 · 62,062–63,024 bp · +
petL · ON858906.1 · 65,738–65,833 bp · +
petG · ON858906.1 · 66,008–66,121 bp · +
psaJ · ON858906.1 · 66,841–66,975 bp · +
rpl33 · ON858906.1 · 67,437–67,637 bp · +
rps18 · ON858906.1 · 67,804–68,109 bp · +
rps12 · ON858906.1 · 138,587–139,379 bp · +
psbB · ON858906.1 · 72,082–73,608 bp · +
psbT · ON858906.1 · 73,793–73,894 bp · +
psbH · ON858906.1 · 74,197–74,415 bp · +
petB · ON858906.1 · 74,541–75,906 bp · +
petD · ON858906.1 · 76,095–77,287 bp · +
ycf2 · ON858906.1 · 85,787–92,617 bp · +
ycf15 · ON858906.1 · 92,807–92,956 bp · +
trnV-GAC · ON858906.1 · 99,323–99,394 bp · +
rrn16 · ON858906.1 · 99,621–101,111 bp · +
trnI-GAU · ON858906.1 · 101,409–102,427 bp · +
trnA-UGC · ON858906.1 · 102,492–103,370 bp · +
rrn23 · ON858906.1 · 103,542–106,352 bp · +
rrn4.5 · ON858906.1 · 106,451–106,553 bp · +
rrn5 · ON858906.1 · 106,809–106,929 bp · +
trnR-ACG · ON858906.1 · 107,173–107,246 bp · +
ycf1 · ON858906.1 · 108,227–109,357 bp · +
rpl32 · ON858906.1 · 111,951–112,121 bp · +
trnL-UAG · ON858906.1 · 112,886–112,965 bp · +
ccsA · ON858906.1 · 113,054–114,025 bp · +
trnN-GUU · ON858906.1 · 128,362–128,433 bp · +
rps7 · ON858906.1 · 139,433–139,900 bp · +
ndhB · ON858906.1 · 140,171–142,378 bp · +
trnL-CAA · ON858906.1 · 142,950–143,030 bp · +
trnI-CAU · ON858906.1 · 150,555–150,628 bp · +
rpl23 · ON858906.1 · 150,794–151,075 bp · +
rpl2 · ON858906.1 · 151,094–152,572 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Isodon umbrosus var. leucanthus
ANNOTATED PLASTOME
ON858906.1
152,682 bp · 132 genes
Gene function
Transfer RNA
Photosystem II
Other
ATP synthase
Ribosomal protein
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38170 76341 114512 152682 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG ycf1 rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
133 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 11 85 75 Locate
psbA gene − 393 1451 1059 Locate
trnK-UUU gene − 1683 4263 2581 Locate
matK gene − 2003 3523 1521 Locate
trnQ-UUG gene − 6880 6951 72 Locate
psbK gene + 7345 7530 186 Locate
psbI gene + 7918 8028 111 Locate
trnS-GCU gene − 8183 8270 88 Locate
trnG-UCC gene + 9038 9796 759 Locate
trnR-UCU gene + 9987 10058 72 Locate
atpA gene − 10162 11685 1524 Locate
atpF gene − 11788 13033 1246 Locate
atpH gene − 13325 13570 246 Locate
atpI gene − 14564 15307 744 Locate
rps2 gene − 15533 16243 711 Locate
rpoC2 gene − 16458 20639 4182 Locate
rpoC1 gene − 20804 23637 2834 Locate
rpoB gene − 23664 26876 3213 Locate
trnC-GCA gene + 28066 28136 71 Locate
petN gene + 28299 28388 90 Locate
psbM gene − 29390 29494 105 Locate
trnD-GUC gene − 30013 30086 74 Locate
trnY-GUA gene − 30197 30280 84 Locate
trnE-UUC gene − 30358 30430 73 Locate
trnT-GGU gene + 31041 31112 72 Locate
psbD gene + 32430 33491 1062 Locate
psbC gene + 33439 34860 1422 Locate
trnS-UGA gene − 35097 35189 93 Locate
psbZ gene + 35530 35718 189 Locate
trnG-GCC gene + 35963 36039 77 Locate
trnfM-CAU gene − 36229 36302 74 Locate
rps14 gene − 36448 36750 303 Locate
psaB gene − 36873 39077 2205 Locate
psaA gene − 39103 41355 2253 Locate
ycf3 gene − 42122 44069 1948 Locate
trnS-GGA gene + 44933 45019 87 Locate
rps4 gene − 45316 45921 606 Locate
trnT-UGU gene − 46350 46422 73 Locate
trnL-UAA gene + 47101 47665 565 Locate
trnF-GAA gene + 47959 48031 73 Locate
ndhJ gene − 48699 49175 477 Locate
ndhK gene − 49286 49963 678 Locate
ndhC gene − 50015 50377 363 Locate
trnV-UAC gene − 51334 51990 657 Locate
trnM-CAU gene + 52171 52243 73 Locate
atpE gene − 52444 52845 402 Locate
atpB gene − 52842 54338 1497 Locate
rbcL gene + 55130 56563 1434 Locate
accD gene + 57273 58754 1482 Locate
psaI gene + 59456 59566 111 Locate
ycf4 gene + 60013 60567 555 Locate
cemA gene + 61158 61847 690 Locate
petA gene + 62062 63024 963 Locate
psbJ gene − 64063 64185 123 Locate
psbL gene − 64320 64436 117 Locate
psbF gene − 64460 64579 120 Locate
psbE gene − 64594 64845 252 Locate
petL gene + 65738 65833 96 Locate
petG gene + 66008 66121 114 Locate
trnW-CCA gene − 66244 66317 74 Locate
trnP-UGG gene − 66486 66559 74 Locate
psaJ gene + 66841 66975 135 Locate
rpl33 gene + 67437 67637 201 Locate
rps18 gene + 67804 68109 306 Locate
rpl20 gene − 68345 68731 387 Locate
rps12 gene − 69463 69576 114 Locate
clpP gene − 69695 71609 1915 Locate
psbB gene + 72082 73608 1527 Locate
psbT gene + 73793 73894 102 Locate
psbN gene − 73960 74091 132 Locate
psbH gene + 74197 74415 219 Locate
petB gene + 74541 75906 1366 Locate
petD gene + 76095 77287 1193 Locate
rpoA gene − 77464 78471 1008 Locate
rps11 gene − 78543 78959 417 Locate
rpl36 gene − 79075 79188 114 Locate
infA gene − 79284 79517 234 Locate
rps8 gene − 79644 80048 405 Locate
rpl14 gene − 80231 80599 369 Locate
rpl16 gene − 80733 82000 1268 Locate
rps3 gene − 82144 82806 663 Locate
rpl22 gene − 82791 83264 474 Locate
rps19 gene − 83329 83607 279 Locate
rpl2 gene − 83675 85153 1479 Locate
rpl23 gene − 85172 85453 282 Locate
trnI-CAU gene − 85619 85692 74 Locate
ycf2 gene + 85787 92617 6831 Locate
ycf15 gene + 92807 92956 150 Locate
trnL-CAA gene − 93217 93297 81 Locate
ndhB gene − 93869 96076 2208 Locate
rps7 gene − 96347 96814 468 Locate
rps12 gene − 96868 97660 793 Locate
trnV-GAC gene + 99323 99394 72 Locate
rrn16 gene + 99621 101111 1491 Locate
trnI-GAU gene + 101409 102427 1019 Locate
trnA-UGC gene + 102492 103370 879 Locate
rrn23 gene + 103542 106352 2811 Locate
rrn4.5 gene + 106451 106553 103 Locate
rrn5 gene + 106809 106929 121 Locate
trnR-ACG gene + 107173 107246 74 Locate
trnN-GUU gene − 107814 107885 72 Locate
ycf1 gene + 108227 109357 1131 Locate
ndhF gene − 109251 111482 2232 Locate
rpl32 gene + 111951 112121 171 Locate
trnL-UAG gene + 112886 112965 80 Locate
ccsA gene + 113054 114025 972 Locate
ndhD gene − 114257 115786 1530 Locate
psaC gene − 115877 116122 246 Locate
ndhE gene − 116378 116683 306 Locate
ndhG gene − 116898 117428 531 Locate
ndhI gene − 117788 118294 507 Locate
ndhA gene − 118375 120498 2124 Locate
ndhH gene − 120500 121681 1182 Locate
rps15 gene − 121796 122068 273 Locate
ycf1 gene − 122498 128020 5523 Locate
trnN-GUU gene + 128362 128433 72 Locate
trnR-ACG gene − 129001 129074 74 Locate
rrn5 gene − 129318 129438 121 Locate
rrn4.5 gene − 129694 129796 103 Locate
rrn23 gene − 129895 132705 2811 Locate
trnA-UGC gene − 132877 133755 879 Locate
trnI-GAU gene − 133820 134838 1019 Locate
rrn16 gene − 135136 136626 1491 Locate
trnV-GAC gene − 136853 136924 72 Locate
rps12 gene + 138587 139379 793 Locate
rps7 gene + 139433 139900 468 Locate
ndhB gene + 140171 142378 2208 Locate
trnL-CAA gene + 142950 143030 81 Locate
ycf15 gene − 143291 143440 150 Locate
ycf2 gene − 143630 150460 6831 Locate
trnI-CAU gene + 150555 150628 74 Locate
rpl23 gene + 150794 151075 282 Locate
rpl2 gene + 151094 152572 1479 Locate
Status Available
Accession ON858906.1
Length 152,682 bp
GC content 37.6%
Annotated genes 132
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Atp Synthase 6 Ribosomal Protein 25 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources