Isodon villosus chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · NC_067687.1 · 11–85 bp · −
psbA · NC_067687.1 · 317–1,375 bp · −
trnK-UUU · NC_067687.1 · 1,607–4,187 bp · −
matK · NC_067687.1 · 1,927–3,447 bp · −
ON965_pgp086 · NC_067687.1 · 4,684–5,825 bp · −
trnQ-UUG · NC_067687.1 · 6,676–6,747 bp · −
trnS-GCU · NC_067687.1 · 7,844–7,931 bp · −
atpA · NC_067687.1 · 9,717–11,240 bp · −
atpF · NC_067687.1 · 11,340–12,586 bp · −
atpH · NC_067687.1 · 12,878–13,123 bp · −
atpI · NC_067687.1 · 14,068–14,811 bp · −
rps2 · NC_067687.1 · 15,037–15,747 bp · −
rpoC2 · NC_067687.1 · 15,961–20,148 bp · −
rpoC1 · NC_067687.1 · 20,313–23,146 bp · −
rpoB · NC_067687.1 · 23,173–26,385 bp · −
psbM · NC_067687.1 · 28,897–29,001 bp · −
trnD-GUC · NC_067687.1 · 29,520–29,593 bp · −
trnY-GUA · NC_067687.1 · 29,704–29,787 bp · −
trnE-UUC · NC_067687.1 · 29,865–29,937 bp · −
trnS-UGA · NC_067687.1 · 34,632–34,724 bp · −
trnfM-CAU · NC_067687.1 · 35,732–35,805 bp · −
rps14 · NC_067687.1 · 35,950–36,252 bp · −
psaB · NC_067687.1 · 36,375–38,579 bp · −
psaA · NC_067687.1 · 38,605–40,857 bp · −
ycf3 · NC_067687.1 · 41,657–43,617 bp · −
rps4 · NC_067687.1 · 44,837–45,442 bp · −
trnT-UGU · NC_067687.1 · 45,885–45,957 bp · −
ndhJ · NC_067687.1 · 48,250–48,726 bp · −
ndhK · NC_067687.1 · 48,837–49,514 bp · −
ndhC · NC_067687.1 · 49,566–49,928 bp · −
trnV-UAC · NC_067687.1 · 50,889–51,546 bp · −
atpE · NC_067687.1 · 52,005–52,406 bp · −
atpB · NC_067687.1 · 52,403–53,899 bp · −
psbJ · NC_067687.1 · 63,574–63,696 bp · −
psbL · NC_067687.1 · 63,831–63,947 bp · −
psbF · NC_067687.1 · 63,971–64,090 bp · −
psbE · NC_067687.1 · 64,105–64,356 bp · −
trnW-CCA · NC_067687.1 · 65,756–65,829 bp · −
trnP-UGG · NC_067687.1 · 65,999–66,072 bp · −
rpl20 · NC_067687.1 · 67,851–68,237 bp · −
rps12 · NC_067687.1 · 68,969–69,082 bp · −
rps12 · NC_067687.1 · 96,342–97,135 bp · −
clpP · NC_067687.1 · 69,201–71,122 bp · −
psbN · NC_067687.1 · 73,472–73,603 bp · −
rpoA · NC_067687.1 · 76,977–77,984 bp · −
rps11 · NC_067687.1 · 78,056–78,472 bp · −
rpl36 · NC_067687.1 · 78,582–78,695 bp · −
infA · NC_067687.1 · 78,791–79,024 bp · −
rps8 · NC_067687.1 · 79,150–79,554 bp · −
rpl14 · NC_067687.1 · 79,728–80,096 bp · −
rpl16 · NC_067687.1 · 80,232–81,500 bp · −
rps3 · NC_067687.1 · 81,653–82,315 bp · −
rpl22 · NC_067687.1 · 82,300–82,773 bp · −
rps19 · NC_067687.1 · 82,838–83,116 bp · −
rpl2 · NC_067687.1 · 83,185–84,663 bp · −
rpl23 · NC_067687.1 · 84,682–84,963 bp · −
trnI-CAU · NC_067687.1 · 85,129–85,202 bp · −
trnL-CAA · NC_067687.1 · 92,700–92,780 bp · −
ndhB · NC_067687.1 · 93,343–95,550 bp · −
rps7 · NC_067687.1 · 95,821–96,288 bp · −
trnN-GUU · NC_067687.1 · 107,296–107,367 bp · −
ndhF · NC_067687.1 · 108,732–110,963 bp · −
ndhD · NC_067687.1 · 113,737–115,266 bp · −
psaC · NC_067687.1 · 115,357–115,602 bp · −
ndhE · NC_067687.1 · 115,858–116,163 bp · −
ndhG · NC_067687.1 · 116,378–116,908 bp · −
ndhI · NC_067687.1 · 117,277–117,783 bp · −
ndhA · NC_067687.1 · 117,864–119,973 bp · −
ndhH · NC_067687.1 · 119,975–121,156 bp · −
rps15 · NC_067687.1 · 121,271–121,534 bp · −
ycf1 · NC_067687.1 · 121,974–127,538 bp · −
trnR-ACG · NC_067687.1 · 128,523–128,596 bp · −
rrn5 · NC_067687.1 · 128,840–128,960 bp · −
rrn4.5 · NC_067687.1 · 129,216–129,318 bp · −
rrn23 · NC_067687.1 · 129,417–132,227 bp · −
trnA-UGC · NC_067687.1 · 132,391–133,269 bp · −
trnI-GAU · NC_067687.1 · 133,334–134,352 bp · −
rrn16 · NC_067687.1 · 134,650–136,140 bp · −
trnV-GAC · NC_067687.1 · 136,367–136,438 bp · −
ycf15 · NC_067687.1 · 142,807–142,956 bp · −
ycf2 · NC_067687.1 · 143,146–149,949 bp · −
psbK · NC_067687.1 · 7,142–7,327 bp · +
psbI · NC_067687.1 · 7,717–7,827 bp · +
trnG-UCC · NC_067687.1 · 8,592–9,351 bp · +
trnR-UCU · NC_067687.1 · 9,541–9,612 bp · +
trnC-GCA · NC_067687.1 · 27,577–27,647 bp · +
petN · NC_067687.1 · 27,810–27,899 bp · +
trnT-GGU · NC_067687.1 · 30,519–30,590 bp · +
psbD · NC_067687.1 · 31,966–33,027 bp · +
psbC · NC_067687.1 · 32,975–34,396 bp · +
psbZ · NC_067687.1 · 35,065–35,253 bp · +
trnG-GCC · NC_067687.1 · 35,489–35,559 bp · +
trnS-GGA · NC_067687.1 · 44,462–44,548 bp · +
trnL-UAA · NC_067687.1 · 46,651–47,194 bp · +
trnF-GAA · NC_067687.1 · 47,494–47,566 bp · +
trnM-CAU · NC_067687.1 · 51,727–51,799 bp · +
rbcL · NC_067687.1 · 54,698–56,143 bp · +
accD · NC_067687.1 · 56,826–58,307 bp · +
psaI · NC_067687.1 · 59,005–59,115 bp · +
ycf4 · NC_067687.1 · 59,561–60,115 bp · +
cemA · NC_067687.1 · 60,701–61,390 bp · +
petA · NC_067687.1 · 61,605–62,567 bp · +
petL · NC_067687.1 · 65,250–65,345 bp · +
petG · NC_067687.1 · 65,520–65,633 bp · +
psaJ · NC_067687.1 · 66,356–66,490 bp · +
rpl33 · NC_067687.1 · 66,938–67,138 bp · +
rps18 · NC_067687.1 · 67,305–67,610 bp · +
rps12 · NC_067687.1 · 138,111–138,904 bp · +
psbB · NC_067687.1 · 71,595–73,121 bp · +
psbT · NC_067687.1 · 73,305–73,406 bp · +
psbH · NC_067687.1 · 73,709–73,927 bp · +
petB · NC_067687.1 · 74,062–75,418 bp · +
petD · NC_067687.1 · 75,607–76,800 bp · +
ycf2 · NC_067687.1 · 85,297–92,100 bp · +
ycf15 · NC_067687.1 · 92,290–92,439 bp · +
trnV-GAC · NC_067687.1 · 98,808–98,879 bp · +
rrn16 · NC_067687.1 · 99,106–100,596 bp · +
trnI-GAU · NC_067687.1 · 100,894–101,912 bp · +
trnA-UGC · NC_067687.1 · 101,977–102,855 bp · +
rrn23 · NC_067687.1 · 103,019–105,829 bp · +
rrn4.5 · NC_067687.1 · 105,928–106,030 bp · +
rrn5 · NC_067687.1 · 106,286–106,406 bp · +
trnR-ACG · NC_067687.1 · 106,650–106,723 bp · +
ycf1 · NC_067687.1 · 107,708–108,838 bp · +
rpl32 · NC_067687.1 · 111,448–111,618 bp · +
trnL-UAG · NC_067687.1 · 112,375–112,454 bp · +
ccsA · NC_067687.1 · 112,542–113,513 bp · +
trnN-GUU · NC_067687.1 · 127,879–127,950 bp · +
rps7 · NC_067687.1 · 138,958–139,425 bp · +
ndhB · NC_067687.1 · 139,696–141,903 bp · +
trnL-CAA · NC_067687.1 · 142,466–142,551 bp · +
trnI-CAU · NC_067687.1 · 150,044–150,117 bp · +
rpl23 · NC_067687.1 · 150,283–150,564 bp · +
rpl2 · NC_067687.1 · 150,583–152,061 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Isodon villosus
ANNOTATED PLASTOME
NC_067687.1
152,172 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
ATP synthase
Ribosomal protein
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38043 76086 114129 152172 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG ycf1 rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK ON965_pgp086 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 11 85 75 Locate
psbA gene − 317 1375 1059 Locate
trnK-UUU gene − 1607 4187 2581 Locate
matK gene − 1927 3447 1521 Locate
ON965_pgp086 gene − 4684 5825 1142 Locate
trnQ-UUG gene − 6676 6747 72 Locate
psbK gene + 7142 7327 186 Locate
psbI gene + 7717 7827 111 Locate
trnS-GCU gene − 7844 7931 88 Locate
trnG-UCC gene + 8592 9351 760 Locate
trnR-UCU gene + 9541 9612 72 Locate
atpA gene − 9717 11240 1524 Locate
atpF gene − 11340 12586 1247 Locate
atpH gene − 12878 13123 246 Locate
atpI gene − 14068 14811 744 Locate
rps2 gene − 15037 15747 711 Locate
rpoC2 gene − 15961 20148 4188 Locate
rpoC1 gene − 20313 23146 2834 Locate
rpoB gene − 23173 26385 3213 Locate
trnC-GCA gene + 27577 27647 71 Locate
petN gene + 27810 27899 90 Locate
psbM gene − 28897 29001 105 Locate
trnD-GUC gene − 29520 29593 74 Locate
trnY-GUA gene − 29704 29787 84 Locate
trnE-UUC gene − 29865 29937 73 Locate
trnT-GGU gene + 30519 30590 72 Locate
psbD gene + 31966 33027 1062 Locate
psbC gene + 32975 34396 1422 Locate
trnS-UGA gene − 34632 34724 93 Locate
psbZ gene + 35065 35253 189 Locate
trnG-GCC gene + 35489 35559 71 Locate
trnfM-CAU gene − 35732 35805 74 Locate
rps14 gene − 35950 36252 303 Locate
psaB gene − 36375 38579 2205 Locate
psaA gene − 38605 40857 2253 Locate
ycf3 gene − 41657 43617 1961 Locate
trnS-GGA gene + 44462 44548 87 Locate
rps4 gene − 44837 45442 606 Locate
trnT-UGU gene − 45885 45957 73 Locate
trnL-UAA gene + 46651 47194 544 Locate
trnF-GAA gene + 47494 47566 73 Locate
ndhJ gene − 48250 48726 477 Locate
ndhK gene − 48837 49514 678 Locate
ndhC gene − 49566 49928 363 Locate
trnV-UAC gene − 50889 51546 658 Locate
trnM-CAU gene + 51727 51799 73 Locate
atpE gene − 52005 52406 402 Locate
atpB gene − 52403 53899 1497 Locate
rbcL gene + 54698 56143 1446 Locate
accD gene + 56826 58307 1482 Locate
psaI gene + 59005 59115 111 Locate
ycf4 gene + 59561 60115 555 Locate
cemA gene + 60701 61390 690 Locate
petA gene + 61605 62567 963 Locate
psbJ gene − 63574 63696 123 Locate
psbL gene − 63831 63947 117 Locate
psbF gene − 63971 64090 120 Locate
psbE gene − 64105 64356 252 Locate
petL gene + 65250 65345 96 Locate
petG gene + 65520 65633 114 Locate
trnW-CCA gene − 65756 65829 74 Locate
trnP-UGG gene − 65999 66072 74 Locate
psaJ gene + 66356 66490 135 Locate
rpl33 gene + 66938 67138 201 Locate
rps18 gene + 67305 67610 306 Locate
rpl20 gene − 67851 68237 387 Locate
rps12 gene − 68969 69082 114 Locate
clpP gene − 69201 71122 1922 Locate
psbB gene + 71595 73121 1527 Locate
psbT gene + 73305 73406 102 Locate
psbN gene − 73472 73603 132 Locate
psbH gene + 73709 73927 219 Locate
petB gene + 74062 75418 1357 Locate
petD gene + 75607 76800 1194 Locate
rpoA gene − 76977 77984 1008 Locate
rps11 gene − 78056 78472 417 Locate
rpl36 gene − 78582 78695 114 Locate
infA gene − 78791 79024 234 Locate
rps8 gene − 79150 79554 405 Locate
rpl14 gene − 79728 80096 369 Locate
rpl16 gene − 80232 81500 1269 Locate
rps3 gene − 81653 82315 663 Locate
rpl22 gene − 82300 82773 474 Locate
rps19 gene − 82838 83116 279 Locate
rpl2 gene − 83185 84663 1479 Locate
rpl23 gene − 84682 84963 282 Locate
trnI-CAU gene − 85129 85202 74 Locate
ycf2 gene + 85297 92100 6804 Locate
ycf15 gene + 92290 92439 150 Locate
trnL-CAA gene − 92700 92780 81 Locate
ndhB gene − 93343 95550 2208 Locate
rps7 gene − 95821 96288 468 Locate
rps12 gene − 96342 97135 794 Locate
trnV-GAC gene + 98808 98879 72 Locate
rrn16 gene + 99106 100596 1491 Locate
trnI-GAU gene + 100894 101912 1019 Locate
trnA-UGC gene + 101977 102855 879 Locate
rrn23 gene + 103019 105829 2811 Locate
rrn4.5 gene + 105928 106030 103 Locate
rrn5 gene + 106286 106406 121 Locate
trnR-ACG gene + 106650 106723 74 Locate
trnN-GUU gene − 107296 107367 72 Locate
ycf1 gene + 107708 108838 1131 Locate
ndhF gene − 108732 110963 2232 Locate
rpl32 gene + 111448 111618 171 Locate
trnL-UAG gene + 112375 112454 80 Locate
ccsA gene + 112542 113513 972 Locate
ndhD gene − 113737 115266 1530 Locate
psaC gene − 115357 115602 246 Locate
ndhE gene − 115858 116163 306 Locate
ndhG gene − 116378 116908 531 Locate
ndhI gene − 117277 117783 507 Locate
ndhA gene − 117864 119973 2110 Locate
ndhH gene − 119975 121156 1182 Locate
rps15 gene − 121271 121534 264 Locate
ycf1 gene − 121974 127538 5565 Locate
trnN-GUU gene + 127879 127950 72 Locate
trnR-ACG gene − 128523 128596 74 Locate
rrn5 gene − 128840 128960 121 Locate
rrn4.5 gene − 129216 129318 103 Locate
rrn23 gene − 129417 132227 2811 Locate
trnA-UGC gene − 132391 133269 879 Locate
trnI-GAU gene − 133334 134352 1019 Locate
rrn16 gene − 134650 136140 1491 Locate
trnV-GAC gene − 136367 136438 72 Locate
rps12 gene + 138111 138904 794 Locate
rps7 gene + 138958 139425 468 Locate
ndhB gene + 139696 141903 2208 Locate
trnL-CAA gene + 142466 142551 86 Locate
ycf15 gene − 142807 142956 150 Locate
ycf2 gene − 143146 149949 6804 Locate
trnI-CAU gene + 150044 150117 74 Locate
rpl23 gene + 150283 150564 282 Locate
rpl2 gene + 150583 152061 1479 Locate
Status Available
Accession NC_067687.1
Length 152,172 bp
GC content 37.6%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 16 Atp Synthase 6 Ribosomal Protein 25 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources