Isodon weisiensis chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · NC_067689.1 · 11–85 bp · −
psbA · NC_067689.1 · 393–1,451 bp · −
trnK-UUU · NC_067689.1 · 1,683–4,263 bp · −
matK · NC_067689.1 · 2,003–3,523 bp · −
OOC81_pgp086 · NC_067689.1 · 4,789–5,934 bp · −
trnQ-UUG · NC_067689.1 · 6,880–6,951 bp · −
trnS-GCU · NC_067689.1 · 8,202–8,289 bp · −
atpA · NC_067689.1 · 10,177–11,700 bp · −
atpF · NC_067689.1 · 11,809–13,054 bp · −
atpH · NC_067689.1 · 13,346–13,591 bp · −
atpI · NC_067689.1 · 14,592–15,335 bp · −
rps2 · NC_067689.1 · 15,561–16,271 bp · −
rpoC2 · NC_067689.1 · 16,487–20,668 bp · −
rpoC1 · NC_067689.1 · 20,833–23,666 bp · −
rpoB · NC_067689.1 · 23,693–26,905 bp · −
psbM · NC_067689.1 · 29,409–29,513 bp · −
trnD-GUC · NC_067689.1 · 30,032–30,105 bp · −
trnY-GUA · NC_067689.1 · 30,216–30,299 bp · −
trnE-UUC · NC_067689.1 · 30,377–30,449 bp · −
trnS-UGA · NC_067689.1 · 35,114–35,206 bp · −
trnfM-CAU · NC_067689.1 · 36,240–36,313 bp · −
rps14 · NC_067689.1 · 36,459–36,761 bp · −
psaB · NC_067689.1 · 36,884–39,088 bp · −
psaA · NC_067689.1 · 39,114–41,366 bp · −
ycf3 · NC_067689.1 · 42,142–44,089 bp · −
rps4 · NC_067689.1 · 45,336–45,941 bp · −
trnT-UGU · NC_067689.1 · 46,365–46,437 bp · −
ndhJ · NC_067689.1 · 48,722–49,198 bp · −
ndhK · NC_067689.1 · 49,309–49,986 bp · −
ndhC · NC_067689.1 · 50,038–50,400 bp · −
trnV-UAC · NC_067689.1 · 51,357–52,012 bp · −
atpE · NC_067689.1 · 52,466–52,867 bp · −
atpB · NC_067689.1 · 52,864–54,360 bp · −
psbJ · NC_067689.1 · 64,075–64,197 bp · −
psbL · NC_067689.1 · 64,332–64,448 bp · −
psbF · NC_067689.1 · 64,472–64,591 bp · −
psbE · NC_067689.1 · 64,606–64,857 bp · −
trnW-CCA · NC_067689.1 · 66,256–66,329 bp · −
trnP-UGG · NC_067689.1 · 66,497–66,570 bp · −
rpl20 · NC_067689.1 · 68,356–68,742 bp · −
rps12 · NC_067689.1 · 69,473–69,586 bp · −
rps12 · NC_067689.1 · 96,876–97,668 bp · −
clpP · NC_067689.1 · 69,705–71,618 bp · −
psbN · NC_067689.1 · 73,968–74,099 bp · −
rpoA · NC_067689.1 · 77,473–78,480 bp · −
rps11 · NC_067689.1 · 78,552–78,968 bp · −
rpl36 · NC_067689.1 · 79,084–79,197 bp · −
infA · NC_067689.1 · 79,293–79,526 bp · −
rps8 · NC_067689.1 · 79,652–80,056 bp · −
rpl14 · NC_067689.1 · 80,239–80,607 bp · −
rpl16 · NC_067689.1 · 80,741–82,008 bp · −
rps3 · NC_067689.1 · 82,152–82,814 bp · −
rpl22 · NC_067689.1 · 82,799–83,272 bp · −
rps19 · NC_067689.1 · 83,337–83,615 bp · −
rpl2 · NC_067689.1 · 83,683–85,161 bp · −
rpl23 · NC_067689.1 · 85,180–85,461 bp · −
trnI-CAU · NC_067689.1 · 85,627–85,700 bp · −
trnL-CAA · NC_067689.1 · 93,225–93,305 bp · −
ndhB · NC_067689.1 · 93,877–96,084 bp · −
rps7 · NC_067689.1 · 96,355–96,822 bp · −
trnN-GUU · NC_067689.1 · 107,820–107,891 bp · −
ndhF · NC_067689.1 · 109,257–111,488 bp · −
ndhD · NC_067689.1 · 114,271–115,800 bp · −
psaC · NC_067689.1 · 115,891–116,136 bp · −
ndhE · NC_067689.1 · 116,392–116,697 bp · −
ndhG · NC_067689.1 · 116,912–117,442 bp · −
ndhI · NC_067689.1 · 117,801–118,307 bp · −
ndhA · NC_067689.1 · 118,388–120,511 bp · −
ndhH · NC_067689.1 · 120,513–121,694 bp · −
rps15 · NC_067689.1 · 121,809–122,081 bp · −
ycf1 · NC_067689.1 · 122,511–128,033 bp · −
trnR-ACG · NC_067689.1 · 129,013–129,086 bp · −
rrn5 · NC_067689.1 · 129,330–129,450 bp · −
rrn4.5 · NC_067689.1 · 129,706–129,808 bp · −
rrn23 · NC_067689.1 · 129,907–132,717 bp · −
trnA-UGC · NC_067689.1 · 132,889–133,767 bp · −
trnI-GAU · NC_067689.1 · 133,832–134,850 bp · −
rrn16 · NC_067689.1 · 135,148–136,638 bp · −
trnV-GAC · NC_067689.1 · 136,865–136,936 bp · −
ycf15 · NC_067689.1 · 143,302–143,451 bp · −
ycf2 · NC_067689.1 · 143,641–150,471 bp · −
psbK · NC_067689.1 · 7,363–7,548 bp · +
psbI · NC_067689.1 · 7,936–8,046 bp · +
trnG-UCC · NC_067689.1 · 9,052–9,811 bp · +
trnR-UCU · NC_067689.1 · 10,002–10,073 bp · +
trnC-GCA · NC_067689.1 · 28,095–28,165 bp · +
petN · NC_067689.1 · 28,328–28,417 bp · +
trnT-GGU · NC_067689.1 · 31,059–31,130 bp · +
psbD · NC_067689.1 · 32,448–33,509 bp · +
psbC · NC_067689.1 · 33,457–34,878 bp · +
psbZ · NC_067689.1 · 35,547–35,735 bp · +
trnG-GCC · NC_067689.1 · 35,980–36,050 bp · +
trnS-GGA · NC_067689.1 · 44,953–45,039 bp · +
trnL-UAA · NC_067689.1 · 47,124–47,688 bp · +
trnF-GAA · NC_067689.1 · 47,982–48,054 bp · +
trnM-CAU · NC_067689.1 · 52,193–52,265 bp · +
rbcL · NC_067689.1 · 55,151–56,584 bp · +
accD · NC_067689.1 · 57,289–58,770 bp · +
psaI · NC_067689.1 · 59,471–59,581 bp · +
ycf4 · NC_067689.1 · 60,025–60,579 bp · +
cemA · NC_067689.1 · 61,170–61,859 bp · +
petA · NC_067689.1 · 62,074–63,036 bp · +
petL · NC_067689.1 · 65,750–65,845 bp · +
petG · NC_067689.1 · 66,020–66,133 bp · +
psaJ · NC_067689.1 · 66,852–66,986 bp · +
rpl33 · NC_067689.1 · 67,449–67,649 bp · +
rps18 · NC_067689.1 · 67,816–68,121 bp · +
rps12 · NC_067689.1 · 138,598–139,390 bp · +
psbB · NC_067689.1 · 72,091–73,617 bp · +
psbT · NC_067689.1 · 73,801–73,902 bp · +
psbH · NC_067689.1 · 74,205–74,423 bp · +
petB · NC_067689.1 · 74,549–75,915 bp · +
petD · NC_067689.1 · 76,104–77,296 bp · +
ycf2 · NC_067689.1 · 85,795–92,625 bp · +
ycf15 · NC_067689.1 · 92,815–92,964 bp · +
trnV-GAC · NC_067689.1 · 99,330–99,401 bp · +
rrn16 · NC_067689.1 · 99,628–101,118 bp · +
trnI-GAU · NC_067689.1 · 101,416–102,434 bp · +
trnA-UGC · NC_067689.1 · 102,499–103,377 bp · +
rrn23 · NC_067689.1 · 103,549–106,359 bp · +
rrn4.5 · NC_067689.1 · 106,458–106,560 bp · +
rrn5 · NC_067689.1 · 106,816–106,936 bp · +
trnR-ACG · NC_067689.1 · 107,180–107,253 bp · +
ycf1 · NC_067689.1 · 108,233–109,363 bp · +
rpl32 · NC_067689.1 · 111,964–112,134 bp · +
trnL-UAG · NC_067689.1 · 112,899–112,978 bp · +
ccsA · NC_067689.1 · 113,067–114,038 bp · +
trnN-GUU · NC_067689.1 · 128,375–128,446 bp · +
rps7 · NC_067689.1 · 139,444–139,911 bp · +
ndhB · NC_067689.1 · 140,182–142,389 bp · +
trnL-CAA · NC_067689.1 · 142,961–143,041 bp · +
trnI-CAU · NC_067689.1 · 150,566–150,639 bp · +
rpl23 · NC_067689.1 · 150,805–151,086 bp · +
rpl2 · NC_067689.1 · 151,105–152,583 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Isodon weisiensis
ANNOTATED PLASTOME
NC_067689.1
152,693 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
ATP synthase
Ribosomal protein
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38173 76346 114520 152693 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG ycf1 rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK OOC81_pgp086 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 11 85 75 Locate
psbA gene − 393 1451 1059 Locate
trnK-UUU gene − 1683 4263 2581 Locate
matK gene − 2003 3523 1521 Locate
OOC81_pgp086 gene − 4789 5934 1146 Locate
trnQ-UUG gene − 6880 6951 72 Locate
psbK gene + 7363 7548 186 Locate
psbI gene + 7936 8046 111 Locate
trnS-GCU gene − 8202 8289 88 Locate
trnG-UCC gene + 9052 9811 760 Locate
trnR-UCU gene + 10002 10073 72 Locate
atpA gene − 10177 11700 1524 Locate
atpF gene − 11809 13054 1246 Locate
atpH gene − 13346 13591 246 Locate
atpI gene − 14592 15335 744 Locate
rps2 gene − 15561 16271 711 Locate
rpoC2 gene − 16487 20668 4182 Locate
rpoC1 gene − 20833 23666 2834 Locate
rpoB gene − 23693 26905 3213 Locate
trnC-GCA gene + 28095 28165 71 Locate
petN gene + 28328 28417 90 Locate
psbM gene − 29409 29513 105 Locate
trnD-GUC gene − 30032 30105 74 Locate
trnY-GUA gene − 30216 30299 84 Locate
trnE-UUC gene − 30377 30449 73 Locate
trnT-GGU gene + 31059 31130 72 Locate
psbD gene + 32448 33509 1062 Locate
psbC gene + 33457 34878 1422 Locate
trnS-UGA gene − 35114 35206 93 Locate
psbZ gene + 35547 35735 189 Locate
trnG-GCC gene + 35980 36050 71 Locate
trnfM-CAU gene − 36240 36313 74 Locate
rps14 gene − 36459 36761 303 Locate
psaB gene − 36884 39088 2205 Locate
psaA gene − 39114 41366 2253 Locate
ycf3 gene − 42142 44089 1948 Locate
trnS-GGA gene + 44953 45039 87 Locate
rps4 gene − 45336 45941 606 Locate
trnT-UGU gene − 46365 46437 73 Locate
trnL-UAA gene + 47124 47688 565 Locate
trnF-GAA gene + 47982 48054 73 Locate
ndhJ gene − 48722 49198 477 Locate
ndhK gene − 49309 49986 678 Locate
ndhC gene − 50038 50400 363 Locate
trnV-UAC gene − 51357 52012 656 Locate
trnM-CAU gene + 52193 52265 73 Locate
atpE gene − 52466 52867 402 Locate
atpB gene − 52864 54360 1497 Locate
rbcL gene + 55151 56584 1434 Locate
accD gene + 57289 58770 1482 Locate
psaI gene + 59471 59581 111 Locate
ycf4 gene + 60025 60579 555 Locate
cemA gene + 61170 61859 690 Locate
petA gene + 62074 63036 963 Locate
psbJ gene − 64075 64197 123 Locate
psbL gene − 64332 64448 117 Locate
psbF gene − 64472 64591 120 Locate
psbE gene − 64606 64857 252 Locate
petL gene + 65750 65845 96 Locate
petG gene + 66020 66133 114 Locate
trnW-CCA gene − 66256 66329 74 Locate
trnP-UGG gene − 66497 66570 74 Locate
psaJ gene + 66852 66986 135 Locate
rpl33 gene + 67449 67649 201 Locate
rps18 gene + 67816 68121 306 Locate
rpl20 gene − 68356 68742 387 Locate
rps12 gene − 69473 69586 114 Locate
clpP gene − 69705 71618 1914 Locate
psbB gene + 72091 73617 1527 Locate
psbT gene + 73801 73902 102 Locate
psbN gene − 73968 74099 132 Locate
psbH gene + 74205 74423 219 Locate
petB gene + 74549 75915 1367 Locate
petD gene + 76104 77296 1193 Locate
rpoA gene − 77473 78480 1008 Locate
rps11 gene − 78552 78968 417 Locate
rpl36 gene − 79084 79197 114 Locate
infA gene − 79293 79526 234 Locate
rps8 gene − 79652 80056 405 Locate
rpl14 gene − 80239 80607 369 Locate
rpl16 gene − 80741 82008 1268 Locate
rps3 gene − 82152 82814 663 Locate
rpl22 gene − 82799 83272 474 Locate
rps19 gene − 83337 83615 279 Locate
rpl2 gene − 83683 85161 1479 Locate
rpl23 gene − 85180 85461 282 Locate
trnI-CAU gene − 85627 85700 74 Locate
ycf2 gene + 85795 92625 6831 Locate
ycf15 gene + 92815 92964 150 Locate
trnL-CAA gene − 93225 93305 81 Locate
ndhB gene − 93877 96084 2208 Locate
rps7 gene − 96355 96822 468 Locate
rps12 gene − 96876 97668 793 Locate
trnV-GAC gene + 99330 99401 72 Locate
rrn16 gene + 99628 101118 1491 Locate
trnI-GAU gene + 101416 102434 1019 Locate
trnA-UGC gene + 102499 103377 879 Locate
rrn23 gene + 103549 106359 2811 Locate
rrn4.5 gene + 106458 106560 103 Locate
rrn5 gene + 106816 106936 121 Locate
trnR-ACG gene + 107180 107253 74 Locate
trnN-GUU gene − 107820 107891 72 Locate
ycf1 gene + 108233 109363 1131 Locate
ndhF gene − 109257 111488 2232 Locate
rpl32 gene + 111964 112134 171 Locate
trnL-UAG gene + 112899 112978 80 Locate
ccsA gene + 113067 114038 972 Locate
ndhD gene − 114271 115800 1530 Locate
psaC gene − 115891 116136 246 Locate
ndhE gene − 116392 116697 306 Locate
ndhG gene − 116912 117442 531 Locate
ndhI gene − 117801 118307 507 Locate
ndhA gene − 118388 120511 2124 Locate
ndhH gene − 120513 121694 1182 Locate
rps15 gene − 121809 122081 273 Locate
ycf1 gene − 122511 128033 5523 Locate
trnN-GUU gene + 128375 128446 72 Locate
trnR-ACG gene − 129013 129086 74 Locate
rrn5 gene − 129330 129450 121 Locate
rrn4.5 gene − 129706 129808 103 Locate
rrn23 gene − 129907 132717 2811 Locate
trnA-UGC gene − 132889 133767 879 Locate
trnI-GAU gene − 133832 134850 1019 Locate
rrn16 gene − 135148 136638 1491 Locate
trnV-GAC gene − 136865 136936 72 Locate
rps12 gene + 138598 139390 793 Locate
rps7 gene + 139444 139911 468 Locate
ndhB gene + 140182 142389 2208 Locate
trnL-CAA gene + 142961 143041 81 Locate
ycf15 gene − 143302 143451 150 Locate
ycf2 gene − 143641 150471 6831 Locate
trnI-CAU gene + 150566 150639 74 Locate
rpl23 gene + 150805 151086 282 Locate
rpl2 gene + 151105 152583 1479 Locate
Status Available
Accession NC_067689.1
Length 152,693 bp
GC content 37.6%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 16 Atp Synthase 6 Ribosomal Protein 25 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources