Isodon wikstroemioides chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · NC_067690.1 · 11–85 bp · −
psbA · NC_067690.1 · 393–1,451 bp · −
trnK-UUU · NC_067690.1 · 1,683–4,260 bp · −
matK · NC_067690.1 · 2,004–3,524 bp · −
OOC80_pgp086 · NC_067690.1 · 4,786–5,931 bp · −
trnQ-UUG · NC_067690.1 · 6,871–6,942 bp · −
trnS-GCU · NC_067690.1 · 8,176–8,263 bp · −
atpA · NC_067690.1 · 10,152–11,675 bp · −
atpF · NC_067690.1 · 11,787–13,033 bp · −
atpH · NC_067690.1 · 13,325–13,570 bp · −
atpI · NC_067690.1 · 14,571–15,314 bp · −
rps2 · NC_067690.1 · 15,540–16,250 bp · −
rpoC2 · NC_067690.1 · 16,467–20,648 bp · −
rpoC1 · NC_067690.1 · 20,813–23,646 bp · −
rpoB · NC_067690.1 · 23,673–26,885 bp · −
psbM · NC_067690.1 · 29,388–29,492 bp · −
trnD-GUC · NC_067690.1 · 30,011–30,084 bp · −
trnY-GUA · NC_067690.1 · 30,195–30,278 bp · −
trnE-UUC · NC_067690.1 · 30,356–30,428 bp · −
trnS-UGA · NC_067690.1 · 35,092–35,184 bp · −
trnfM-CAU · NC_067690.1 · 36,216–36,289 bp · −
rps14 · NC_067690.1 · 36,435–36,737 bp · −
psaB · NC_067690.1 · 36,860–39,064 bp · −
psaA · NC_067690.1 · 39,090–41,342 bp · −
ycf3 · NC_067690.1 · 42,111–44,058 bp · −
rps4 · NC_067690.1 · 45,309–45,914 bp · −
trnT-UGU · NC_067690.1 · 46,309–46,381 bp · −
ndhJ · NC_067690.1 · 48,665–49,141 bp · −
ndhK · NC_067690.1 · 49,272–49,949 bp · −
ndhC · NC_067690.1 · 50,001–50,363 bp · −
trnV-UAC · NC_067690.1 · 51,315–51,971 bp · −
atpE · NC_067690.1 · 52,425–52,826 bp · −
atpB · NC_067690.1 · 52,823–54,319 bp · −
psbJ · NC_067690.1 · 64,027–64,149 bp · −
psbL · NC_067690.1 · 64,284–64,400 bp · −
psbF · NC_067690.1 · 64,424–64,543 bp · −
psbE · NC_067690.1 · 64,558–64,809 bp · −
trnW-CCA · NC_067690.1 · 66,208–66,281 bp · −
trnP-UGG · NC_067690.1 · 66,450–66,523 bp · −
rpl20 · NC_067690.1 · 68,310–68,696 bp · −
rps12 · NC_067690.1 · 69,429–69,542 bp · −
rps12 · NC_067690.1 · 96,834–97,626 bp · −
clpP · NC_067690.1 · 69,661–71,577 bp · −
psbN · NC_067690.1 · 73,927–74,058 bp · −
rpoA · NC_067690.1 · 77,426–78,439 bp · −
rps11 · NC_067690.1 · 78,511–78,927 bp · −
rpl36 · NC_067690.1 · 79,043–79,156 bp · −
infA · NC_067690.1 · 79,252–79,485 bp · −
rps8 · NC_067690.1 · 79,611–80,015 bp · −
rpl14 · NC_067690.1 · 80,198–80,566 bp · −
rpl16 · NC_067690.1 · 80,699–81,966 bp · −
rps3 · NC_067690.1 · 82,110–82,772 bp · −
rpl22 · NC_067690.1 · 82,757–83,230 bp · −
rps19 · NC_067690.1 · 83,295–83,573 bp · −
rpl2 · NC_067690.1 · 83,641–85,119 bp · −
rpl23 · NC_067690.1 · 85,138–85,419 bp · −
trnI-CAU · NC_067690.1 · 85,585–85,658 bp · −
trnL-CAA · NC_067690.1 · 93,183–93,263 bp · −
ndhB · NC_067690.1 · 93,835–96,042 bp · −
rps7 · NC_067690.1 · 96,313–96,780 bp · −
trnN-GUU · NC_067690.1 · 107,778–107,849 bp · −
ndhF · NC_067690.1 · 109,215–111,446 bp · −
ndhD · NC_067690.1 · 114,229–115,758 bp · −
psaC · NC_067690.1 · 115,849–116,094 bp · −
ndhE · NC_067690.1 · 116,350–116,655 bp · −
ndhG · NC_067690.1 · 116,870–117,400 bp · −
ndhI · NC_067690.1 · 117,760–118,266 bp · −
ndhA · NC_067690.1 · 118,347–120,470 bp · −
ndhH · NC_067690.1 · 120,472–121,653 bp · −
rps15 · NC_067690.1 · 121,768–122,040 bp · −
ycf1 · NC_067690.1 · 122,470–127,992 bp · −
trnR-ACG · NC_067690.1 · 128,972–129,045 bp · −
rrn5 · NC_067690.1 · 129,289–129,409 bp · −
rrn4.5 · NC_067690.1 · 129,665–129,767 bp · −
rrn23 · NC_067690.1 · 129,866–132,676 bp · −
trnA-UGC · NC_067690.1 · 132,848–133,726 bp · −
trnI-GAU · NC_067690.1 · 133,791–134,809 bp · −
rrn16 · NC_067690.1 · 135,107–136,597 bp · −
trnV-GAC · NC_067690.1 · 136,824–136,895 bp · −
ycf15 · NC_067690.1 · 143,261–143,410 bp · −
ycf2 · NC_067690.1 · 143,600–150,430 bp · −
psbK · NC_067690.1 · 7,336–7,521 bp · +
psbI · NC_067690.1 · 7,909–8,019 bp · +
trnG-UCC · NC_067690.1 · 9,026–9,786 bp · +
trnR-UCU · NC_067690.1 · 9,977–10,048 bp · +
trnC-GCA · NC_067690.1 · 28,074–28,144 bp · +
petN · NC_067690.1 · 28,307–28,396 bp · +
trnT-GGU · NC_067690.1 · 31,038–31,109 bp · +
psbD · NC_067690.1 · 32,427–33,488 bp · +
psbC · NC_067690.1 · 33,436–34,857 bp · +
psbZ · NC_067690.1 · 35,525–35,713 bp · +
trnG-GCC · NC_067690.1 · 35,958–36,028 bp · +
trnS-GGA · NC_067690.1 · 44,922–45,008 bp · +
trnL-UAA · NC_067690.1 · 47,067–47,631 bp · +
trnF-GAA · NC_067690.1 · 47,925–47,997 bp · +
trnM-CAU · NC_067690.1 · 52,152–52,224 bp · +
rbcL · NC_067690.1 · 55,111–56,544 bp · +
accD · NC_067690.1 · 57,243–58,724 bp · +
psaI · NC_067690.1 · 59,424–59,534 bp · +
ycf4 · NC_067690.1 · 59,984–60,538 bp · +
cemA · NC_067690.1 · 61,122–61,811 bp · +
petA · NC_067690.1 · 62,026–62,988 bp · +
petL · NC_067690.1 · 65,702–65,797 bp · +
petG · NC_067690.1 · 65,972–66,085 bp · +
psaJ · NC_067690.1 · 66,805–66,939 bp · +
rpl33 · NC_067690.1 · 67,401–67,601 bp · +
rps18 · NC_067690.1 · 67,768–68,073 bp · +
rps12 · NC_067690.1 · 138,557–139,349 bp · +
psbB · NC_067690.1 · 72,050–73,576 bp · +
psbT · NC_067690.1 · 73,760–73,861 bp · +
psbH · NC_067690.1 · 74,164–74,382 bp · +
petB · NC_067690.1 · 74,508–75,868 bp · +
petD · NC_067690.1 · 76,057–77,249 bp · +
ycf2 · NC_067690.1 · 85,753–92,583 bp · +
ycf15 · NC_067690.1 · 92,773–92,922 bp · +
trnV-GAC · NC_067690.1 · 99,288–99,359 bp · +
rrn16 · NC_067690.1 · 99,586–101,076 bp · +
trnI-GAU · NC_067690.1 · 101,374–102,392 bp · +
trnA-UGC · NC_067690.1 · 102,457–103,335 bp · +
rrn23 · NC_067690.1 · 103,507–106,317 bp · +
rrn4.5 · NC_067690.1 · 106,416–106,518 bp · +
rrn5 · NC_067690.1 · 106,774–106,894 bp · +
trnR-ACG · NC_067690.1 · 107,138–107,211 bp · +
ycf1 · NC_067690.1 · 108,191–109,321 bp · +
rpl32 · NC_067690.1 · 111,922–112,092 bp · +
trnL-UAG · NC_067690.1 · 112,858–112,937 bp · +
ccsA · NC_067690.1 · 113,026–113,997 bp · +
trnN-GUU · NC_067690.1 · 128,334–128,405 bp · +
rps7 · NC_067690.1 · 139,403–139,870 bp · +
ndhB · NC_067690.1 · 140,141–142,348 bp · +
trnL-CAA · NC_067690.1 · 142,920–143,000 bp · +
trnI-CAU · NC_067690.1 · 150,525–150,598 bp · +
rpl23 · NC_067690.1 · 150,764–151,045 bp · +
rpl2 · NC_067690.1 · 151,064–152,542 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Isodon wikstroemioides
ANNOTATED PLASTOME
NC_067690.1
152,652 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
ATP synthase
Ribosomal protein
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38163 76326 114489 152652 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG ycf1 rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK OOC80_pgp086 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 11 85 75 Locate
psbA gene − 393 1451 1059 Locate
trnK-UUU gene − 1683 4260 2578 Locate
matK gene − 2004 3524 1521 Locate
OOC80_pgp086 gene − 4786 5931 1146 Locate
trnQ-UUG gene − 6871 6942 72 Locate
psbK gene + 7336 7521 186 Locate
psbI gene + 7909 8019 111 Locate
trnS-GCU gene − 8176 8263 88 Locate
trnG-UCC gene + 9026 9786 761 Locate
trnR-UCU gene + 9977 10048 72 Locate
atpA gene − 10152 11675 1524 Locate
atpF gene − 11787 13033 1247 Locate
atpH gene − 13325 13570 246 Locate
atpI gene − 14571 15314 744 Locate
rps2 gene − 15540 16250 711 Locate
rpoC2 gene − 16467 20648 4182 Locate
rpoC1 gene − 20813 23646 2834 Locate
rpoB gene − 23673 26885 3213 Locate
trnC-GCA gene + 28074 28144 71 Locate
petN gene + 28307 28396 90 Locate
psbM gene − 29388 29492 105 Locate
trnD-GUC gene − 30011 30084 74 Locate
trnY-GUA gene − 30195 30278 84 Locate
trnE-UUC gene − 30356 30428 73 Locate
trnT-GGU gene + 31038 31109 72 Locate
psbD gene + 32427 33488 1062 Locate
psbC gene + 33436 34857 1422 Locate
trnS-UGA gene − 35092 35184 93 Locate
psbZ gene + 35525 35713 189 Locate
trnG-GCC gene + 35958 36028 71 Locate
trnfM-CAU gene − 36216 36289 74 Locate
rps14 gene − 36435 36737 303 Locate
psaB gene − 36860 39064 2205 Locate
psaA gene − 39090 41342 2253 Locate
ycf3 gene − 42111 44058 1948 Locate
trnS-GGA gene + 44922 45008 87 Locate
rps4 gene − 45309 45914 606 Locate
trnT-UGU gene − 46309 46381 73 Locate
trnL-UAA gene + 47067 47631 565 Locate
trnF-GAA gene + 47925 47997 73 Locate
ndhJ gene − 48665 49141 477 Locate
ndhK gene − 49272 49949 678 Locate
ndhC gene − 50001 50363 363 Locate
trnV-UAC gene − 51315 51971 657 Locate
trnM-CAU gene + 52152 52224 73 Locate
atpE gene − 52425 52826 402 Locate
atpB gene − 52823 54319 1497 Locate
rbcL gene + 55111 56544 1434 Locate
accD gene + 57243 58724 1482 Locate
psaI gene + 59424 59534 111 Locate
ycf4 gene + 59984 60538 555 Locate
cemA gene + 61122 61811 690 Locate
petA gene + 62026 62988 963 Locate
psbJ gene − 64027 64149 123 Locate
psbL gene − 64284 64400 117 Locate
psbF gene − 64424 64543 120 Locate
psbE gene − 64558 64809 252 Locate
petL gene + 65702 65797 96 Locate
petG gene + 65972 66085 114 Locate
trnW-CCA gene − 66208 66281 74 Locate
trnP-UGG gene − 66450 66523 74 Locate
psaJ gene + 66805 66939 135 Locate
rpl33 gene + 67401 67601 201 Locate
rps18 gene + 67768 68073 306 Locate
rpl20 gene − 68310 68696 387 Locate
rps12 gene − 69429 69542 114 Locate
clpP gene − 69661 71577 1917 Locate
psbB gene + 72050 73576 1527 Locate
psbT gene + 73760 73861 102 Locate
psbN gene − 73927 74058 132 Locate
psbH gene + 74164 74382 219 Locate
petB gene + 74508 75868 1361 Locate
petD gene + 76057 77249 1193 Locate
rpoA gene − 77426 78439 1014 Locate
rps11 gene − 78511 78927 417 Locate
rpl36 gene − 79043 79156 114 Locate
infA gene − 79252 79485 234 Locate
rps8 gene − 79611 80015 405 Locate
rpl14 gene − 80198 80566 369 Locate
rpl16 gene − 80699 81966 1268 Locate
rps3 gene − 82110 82772 663 Locate
rpl22 gene − 82757 83230 474 Locate
rps19 gene − 83295 83573 279 Locate
rpl2 gene − 83641 85119 1479 Locate
rpl23 gene − 85138 85419 282 Locate
trnI-CAU gene − 85585 85658 74 Locate
ycf2 gene + 85753 92583 6831 Locate
ycf15 gene + 92773 92922 150 Locate
trnL-CAA gene − 93183 93263 81 Locate
ndhB gene − 93835 96042 2208 Locate
rps7 gene − 96313 96780 468 Locate
rps12 gene − 96834 97626 793 Locate
trnV-GAC gene + 99288 99359 72 Locate
rrn16 gene + 99586 101076 1491 Locate
trnI-GAU gene + 101374 102392 1019 Locate
trnA-UGC gene + 102457 103335 879 Locate
rrn23 gene + 103507 106317 2811 Locate
rrn4.5 gene + 106416 106518 103 Locate
rrn5 gene + 106774 106894 121 Locate
trnR-ACG gene + 107138 107211 74 Locate
trnN-GUU gene − 107778 107849 72 Locate
ycf1 gene + 108191 109321 1131 Locate
ndhF gene − 109215 111446 2232 Locate
rpl32 gene + 111922 112092 171 Locate
trnL-UAG gene + 112858 112937 80 Locate
ccsA gene + 113026 113997 972 Locate
ndhD gene − 114229 115758 1530 Locate
psaC gene − 115849 116094 246 Locate
ndhE gene − 116350 116655 306 Locate
ndhG gene − 116870 117400 531 Locate
ndhI gene − 117760 118266 507 Locate
ndhA gene − 118347 120470 2124 Locate
ndhH gene − 120472 121653 1182 Locate
rps15 gene − 121768 122040 273 Locate
ycf1 gene − 122470 127992 5523 Locate
trnN-GUU gene + 128334 128405 72 Locate
trnR-ACG gene − 128972 129045 74 Locate
rrn5 gene − 129289 129409 121 Locate
rrn4.5 gene − 129665 129767 103 Locate
rrn23 gene − 129866 132676 2811 Locate
trnA-UGC gene − 132848 133726 879 Locate
trnI-GAU gene − 133791 134809 1019 Locate
rrn16 gene − 135107 136597 1491 Locate
trnV-GAC gene − 136824 136895 72 Locate
rps12 gene + 138557 139349 793 Locate
rps7 gene + 139403 139870 468 Locate
ndhB gene + 140141 142348 2208 Locate
trnL-CAA gene + 142920 143000 81 Locate
ycf15 gene − 143261 143410 150 Locate
ycf2 gene − 143600 150430 6831 Locate
trnI-CAU gene + 150525 150598 74 Locate
rpl23 gene + 150764 151045 282 Locate
rpl2 gene + 151064 152542 1479 Locate
Status Available
Accession NC_067690.1
Length 152,652 bp
GC content 37.6%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 16 Atp Synthase 6 Ribosomal Protein 25 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources