Isodon xerophilus chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · NC_067692.1 · 11–85 bp · −
psbA · NC_067692.1 · 397–1,455 bp · −
trnK-UUU · NC_067692.1 · 1,687–4,281 bp · −
matK · NC_067692.1 · 2,021–3,541 bp · −
OOC79_pgp086 · NC_067692.1 · 4,808–5,953 bp · −
trnQ-UUG · NC_067692.1 · 6,675–6,746 bp · −
trnS-GCU · NC_067692.1 · 7,979–8,066 bp · −
atpA · NC_067692.1 · 9,953–11,476 bp · −
atpF · NC_067692.1 · 11,585–12,830 bp · −
atpH · NC_067692.1 · 13,122–13,367 bp · −
atpI · NC_067692.1 · 14,368–15,111 bp · −
rps2 · NC_067692.1 · 15,342–16,052 bp · −
rpoC2 · NC_067692.1 · 16,271–20,452 bp · −
rpoC1 · NC_067692.1 · 20,617–23,450 bp · −
rpoB · NC_067692.1 · 23,477–26,689 bp · −
psbM · NC_067692.1 · 29,192–29,296 bp · −
trnD-GUC · NC_067692.1 · 29,807–29,880 bp · −
trnY-GUA · NC_067692.1 · 29,991–30,074 bp · −
trnE-UUC · NC_067692.1 · 30,152–30,224 bp · −
trnS-UGA · NC_067692.1 · 34,890–34,982 bp · −
trnfM-CAU · NC_067692.1 · 36,015–36,088 bp · −
rps14 · NC_067692.1 · 36,234–36,536 bp · −
psaB · NC_067692.1 · 36,659–38,863 bp · −
psaA · NC_067692.1 · 38,889–41,141 bp · −
ycf3 · NC_067692.1 · 41,916–43,863 bp · −
rps4 · NC_067692.1 · 45,117–45,722 bp · −
trnT-UGU · NC_067692.1 · 46,146–46,218 bp · −
ndhJ · NC_067692.1 · 48,503–48,979 bp · −
ndhK · NC_067692.1 · 49,090–49,767 bp · −
ndhC · NC_067692.1 · 49,819–50,181 bp · −
trnV-UAC · NC_067692.1 · 51,138–51,793 bp · −
atpE · NC_067692.1 · 52,247–52,648 bp · −
atpB · NC_067692.1 · 52,645–54,141 bp · −
psbJ · NC_067692.1 · 63,846–63,968 bp · −
psbL · NC_067692.1 · 64,103–64,219 bp · −
psbF · NC_067692.1 · 64,243–64,362 bp · −
psbE · NC_067692.1 · 64,377–64,628 bp · −
trnW-CCA · NC_067692.1 · 66,027–66,100 bp · −
trnP-UGG · NC_067692.1 · 66,269–66,342 bp · −
rpl20 · NC_067692.1 · 68,127–68,513 bp · −
rps12 · NC_067692.1 · 69,247–69,360 bp · −
rps12 · NC_067692.1 · 96,653–97,445 bp · −
clpP · NC_067692.1 · 69,479–71,394 bp · −
psbN · NC_067692.1 · 73,745–73,876 bp · −
rpoA · NC_067692.1 · 77,250–78,257 bp · −
rps11 · NC_067692.1 · 78,329–78,745 bp · −
rpl36 · NC_067692.1 · 78,861–78,974 bp · −
infA · NC_067692.1 · 79,070–79,303 bp · −
rps8 · NC_067692.1 · 79,429–79,833 bp · −
rpl14 · NC_067692.1 · 80,016–80,384 bp · −
rpl16 · NC_067692.1 · 80,518–81,785 bp · −
rps3 · NC_067692.1 · 81,929–82,591 bp · −
rpl22 · NC_067692.1 · 82,576–83,049 bp · −
rps19 · NC_067692.1 · 83,114–83,392 bp · −
rpl2 · NC_067692.1 · 83,460–84,938 bp · −
rpl23 · NC_067692.1 · 84,957–85,238 bp · −
trnI-CAU · NC_067692.1 · 85,404–85,477 bp · −
trnL-CAA · NC_067692.1 · 93,002–93,082 bp · −
ndhB · NC_067692.1 · 93,654–95,861 bp · −
rps7 · NC_067692.1 · 96,132–96,599 bp · −
trnN-GUU · NC_067692.1 · 107,597–107,668 bp · −
ndhF · NC_067692.1 · 109,034–111,265 bp · −
ndhD · NC_067692.1 · 114,043–115,572 bp · −
psaC · NC_067692.1 · 115,663–115,908 bp · −
ndhE · NC_067692.1 · 116,164–116,469 bp · −
ndhG · NC_067692.1 · 116,684–117,214 bp · −
ndhI · NC_067692.1 · 117,574–118,080 bp · −
ndhA · NC_067692.1 · 118,161–120,284 bp · −
ndhH · NC_067692.1 · 120,286–121,467 bp · −
rps15 · NC_067692.1 · 121,582–121,854 bp · −
ycf1 · NC_067692.1 · 122,284–127,806 bp · −
trnR-ACG · NC_067692.1 · 128,786–128,859 bp · −
rrn5 · NC_067692.1 · 129,103–129,223 bp · −
rrn4.5 · NC_067692.1 · 129,479–129,581 bp · −
rrn23 · NC_067692.1 · 129,680–132,490 bp · −
trnA-UGC · NC_067692.1 · 132,662–133,540 bp · −
trnI-GAU · NC_067692.1 · 133,605–134,623 bp · −
rrn16 · NC_067692.1 · 134,921–136,411 bp · −
trnV-GAC · NC_067692.1 · 136,638–136,709 bp · −
ycf15 · NC_067692.1 · 143,075–143,224 bp · −
ycf2 · NC_067692.1 · 143,414–150,244 bp · −
psbK · NC_067692.1 · 7,140–7,325 bp · +
psbI · NC_067692.1 · 7,713–7,823 bp · +
trnG-UCC · NC_067692.1 · 8,828–9,587 bp · +
trnR-UCU · NC_067692.1 · 9,778–9,849 bp · +
trnC-GCA · NC_067692.1 · 27,878–27,948 bp · +
petN · NC_067692.1 · 28,111–28,200 bp · +
trnT-GGU · NC_067692.1 · 30,834–30,905 bp · +
psbD · NC_067692.1 · 32,223–33,284 bp · +
psbC · NC_067692.1 · 33,232–34,653 bp · +
psbZ · NC_067692.1 · 35,323–35,511 bp · +
trnG-GCC · NC_067692.1 · 35,756–35,826 bp · +
trnS-GGA · NC_067692.1 · 44,734–44,820 bp · +
trnL-UAA · NC_067692.1 · 46,905–47,469 bp · +
trnF-GAA · NC_067692.1 · 47,763–47,835 bp · +
trnM-CAU · NC_067692.1 · 51,974–52,046 bp · +
rbcL · NC_067692.1 · 54,919–56,352 bp · +
accD · NC_067692.1 · 57,057–58,538 bp · +
psaI · NC_067692.1 · 59,240–59,350 bp · +
ycf4 · NC_067692.1 · 59,797–60,351 bp · +
cemA · NC_067692.1 · 60,942–61,631 bp · +
petA · NC_067692.1 · 61,846–62,808 bp · +
petL · NC_067692.1 · 65,521–65,616 bp · +
petG · NC_067692.1 · 65,791–65,904 bp · +
psaJ · NC_067692.1 · 66,624–66,758 bp · +
rpl33 · NC_067692.1 · 67,220–67,420 bp · +
rps18 · NC_067692.1 · 67,587–67,892 bp · +
rps12 · NC_067692.1 · 138,371–139,163 bp · +
psbB · NC_067692.1 · 71,867–73,393 bp · +
psbT · NC_067692.1 · 73,578–73,679 bp · +
psbH · NC_067692.1 · 73,982–74,200 bp · +
petB · NC_067692.1 · 74,326–75,692 bp · +
petD · NC_067692.1 · 75,881–77,073 bp · +
ycf2 · NC_067692.1 · 85,572–92,402 bp · +
ycf15 · NC_067692.1 · 92,592–92,741 bp · +
trnV-GAC · NC_067692.1 · 99,107–99,178 bp · +
rrn16 · NC_067692.1 · 99,405–100,895 bp · +
trnI-GAU · NC_067692.1 · 101,193–102,211 bp · +
trnA-UGC · NC_067692.1 · 102,276–103,154 bp · +
rrn23 · NC_067692.1 · 103,326–106,136 bp · +
rrn4.5 · NC_067692.1 · 106,235–106,337 bp · +
rrn5 · NC_067692.1 · 106,593–106,713 bp · +
trnR-ACG · NC_067692.1 · 106,957–107,030 bp · +
ycf1 · NC_067692.1 · 108,010–109,140 bp · +
rpl32 · NC_067692.1 · 111,734–111,904 bp · +
trnL-UAG · NC_067692.1 · 112,672–112,751 bp · +
ccsA · NC_067692.1 · 112,840–113,811 bp · +
trnN-GUU · NC_067692.1 · 128,148–128,219 bp · +
rps7 · NC_067692.1 · 139,217–139,684 bp · +
ndhB · NC_067692.1 · 139,955–142,162 bp · +
trnL-CAA · NC_067692.1 · 142,734–142,814 bp · +
trnI-CAU · NC_067692.1 · 150,339–150,412 bp · +
rpl23 · NC_067692.1 · 150,578–150,859 bp · +
rpl2 · NC_067692.1 · 150,878–152,356 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Isodon xerophilus
ANNOTATED PLASTOME
NC_067692.1
152,466 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
ATP synthase
Ribosomal protein
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38116 76233 114350 152466 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG ycf1 rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK OOC79_pgp086 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 11 85 75 Locate
psbA gene − 397 1455 1059 Locate
trnK-UUU gene − 1687 4281 2595 Locate
matK gene − 2021 3541 1521 Locate
OOC79_pgp086 gene − 4808 5953 1146 Locate
trnQ-UUG gene − 6675 6746 72 Locate
psbK gene + 7140 7325 186 Locate
psbI gene + 7713 7823 111 Locate
trnS-GCU gene − 7979 8066 88 Locate
trnG-UCC gene + 8828 9587 760 Locate
trnR-UCU gene + 9778 9849 72 Locate
atpA gene − 9953 11476 1524 Locate
atpF gene − 11585 12830 1246 Locate
atpH gene − 13122 13367 246 Locate
atpI gene − 14368 15111 744 Locate
rps2 gene − 15342 16052 711 Locate
rpoC2 gene − 16271 20452 4182 Locate
rpoC1 gene − 20617 23450 2834 Locate
rpoB gene − 23477 26689 3213 Locate
trnC-GCA gene + 27878 27948 71 Locate
petN gene + 28111 28200 90 Locate
psbM gene − 29192 29296 105 Locate
trnD-GUC gene − 29807 29880 74 Locate
trnY-GUA gene − 29991 30074 84 Locate
trnE-UUC gene − 30152 30224 73 Locate
trnT-GGU gene + 30834 30905 72 Locate
psbD gene + 32223 33284 1062 Locate
psbC gene + 33232 34653 1422 Locate
trnS-UGA gene − 34890 34982 93 Locate
psbZ gene + 35323 35511 189 Locate
trnG-GCC gene + 35756 35826 71 Locate
trnfM-CAU gene − 36015 36088 74 Locate
rps14 gene − 36234 36536 303 Locate
psaB gene − 36659 38863 2205 Locate
psaA gene − 38889 41141 2253 Locate
ycf3 gene − 41916 43863 1948 Locate
trnS-GGA gene + 44734 44820 87 Locate
rps4 gene − 45117 45722 606 Locate
trnT-UGU gene − 46146 46218 73 Locate
trnL-UAA gene + 46905 47469 565 Locate
trnF-GAA gene + 47763 47835 73 Locate
ndhJ gene − 48503 48979 477 Locate
ndhK gene − 49090 49767 678 Locate
ndhC gene − 49819 50181 363 Locate
trnV-UAC gene − 51138 51793 656 Locate
trnM-CAU gene + 51974 52046 73 Locate
atpE gene − 52247 52648 402 Locate
atpB gene − 52645 54141 1497 Locate
rbcL gene + 54919 56352 1434 Locate
accD gene + 57057 58538 1482 Locate
psaI gene + 59240 59350 111 Locate
ycf4 gene + 59797 60351 555 Locate
cemA gene + 60942 61631 690 Locate
petA gene + 61846 62808 963 Locate
psbJ gene − 63846 63968 123 Locate
psbL gene − 64103 64219 117 Locate
psbF gene − 64243 64362 120 Locate
psbE gene − 64377 64628 252 Locate
petL gene + 65521 65616 96 Locate
petG gene + 65791 65904 114 Locate
trnW-CCA gene − 66027 66100 74 Locate
trnP-UGG gene − 66269 66342 74 Locate
psaJ gene + 66624 66758 135 Locate
rpl33 gene + 67220 67420 201 Locate
rps18 gene + 67587 67892 306 Locate
rpl20 gene − 68127 68513 387 Locate
rps12 gene − 69247 69360 114 Locate
clpP gene − 69479 71394 1916 Locate
psbB gene + 71867 73393 1527 Locate
psbT gene + 73578 73679 102 Locate
psbN gene − 73745 73876 132 Locate
psbH gene + 73982 74200 219 Locate
petB gene + 74326 75692 1367 Locate
petD gene + 75881 77073 1193 Locate
rpoA gene − 77250 78257 1008 Locate
rps11 gene − 78329 78745 417 Locate
rpl36 gene − 78861 78974 114 Locate
infA gene − 79070 79303 234 Locate
rps8 gene − 79429 79833 405 Locate
rpl14 gene − 80016 80384 369 Locate
rpl16 gene − 80518 81785 1268 Locate
rps3 gene − 81929 82591 663 Locate
rpl22 gene − 82576 83049 474 Locate
rps19 gene − 83114 83392 279 Locate
rpl2 gene − 83460 84938 1479 Locate
rpl23 gene − 84957 85238 282 Locate
trnI-CAU gene − 85404 85477 74 Locate
ycf2 gene + 85572 92402 6831 Locate
ycf15 gene + 92592 92741 150 Locate
trnL-CAA gene − 93002 93082 81 Locate
ndhB gene − 93654 95861 2208 Locate
rps7 gene − 96132 96599 468 Locate
rps12 gene − 96653 97445 793 Locate
trnV-GAC gene + 99107 99178 72 Locate
rrn16 gene + 99405 100895 1491 Locate
trnI-GAU gene + 101193 102211 1019 Locate
trnA-UGC gene + 102276 103154 879 Locate
rrn23 gene + 103326 106136 2811 Locate
rrn4.5 gene + 106235 106337 103 Locate
rrn5 gene + 106593 106713 121 Locate
trnR-ACG gene + 106957 107030 74 Locate
trnN-GUU gene − 107597 107668 72 Locate
ycf1 gene + 108010 109140 1131 Locate
ndhF gene − 109034 111265 2232 Locate
rpl32 gene + 111734 111904 171 Locate
trnL-UAG gene + 112672 112751 80 Locate
ccsA gene + 112840 113811 972 Locate
ndhD gene − 114043 115572 1530 Locate
psaC gene − 115663 115908 246 Locate
ndhE gene − 116164 116469 306 Locate
ndhG gene − 116684 117214 531 Locate
ndhI gene − 117574 118080 507 Locate
ndhA gene − 118161 120284 2124 Locate
ndhH gene − 120286 121467 1182 Locate
rps15 gene − 121582 121854 273 Locate
ycf1 gene − 122284 127806 5523 Locate
trnN-GUU gene + 128148 128219 72 Locate
trnR-ACG gene − 128786 128859 74 Locate
rrn5 gene − 129103 129223 121 Locate
rrn4.5 gene − 129479 129581 103 Locate
rrn23 gene − 129680 132490 2811 Locate
trnA-UGC gene − 132662 133540 879 Locate
trnI-GAU gene − 133605 134623 1019 Locate
rrn16 gene − 134921 136411 1491 Locate
trnV-GAC gene − 136638 136709 72 Locate
rps12 gene + 138371 139163 793 Locate
rps7 gene + 139217 139684 468 Locate
ndhB gene + 139955 142162 2208 Locate
trnL-CAA gene + 142734 142814 81 Locate
ycf15 gene − 143075 143224 150 Locate
ycf2 gene − 143414 150244 6831 Locate
trnI-CAU gene + 150339 150412 74 Locate
rpl23 gene + 150578 150859 282 Locate
rpl2 gene + 150878 152356 1479 Locate
Status Available
Accession NC_067692.1
Length 152,466 bp
GC content 37.6%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 16 Atp Synthase 6 Ribosomal Protein 25 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources