Lagochilus ilicifolius chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · NC_067785.1 · 2–75 bp · −
psbA · NC_067785.1 · 307–1,365 bp · −
trnK-UUU · NC_067785.1 · 1,598–4,152 bp · −
matK · NC_067785.1 · 1,897–3,432 bp · −
rps16 · NC_067785.1 · 4,865–6,003 bp · −
trnQ-UUG · NC_067785.1 · 7,005–7,076 bp · −
trnS-GCU · NC_067785.1 · 8,194–8,281 bp · −
atpA · NC_067785.1 · 10,023–11,546 bp · −
atpF · NC_067785.1 · 11,635–12,847 bp · −
atpH · NC_067785.1 · 13,208–13,453 bp · −
atpI · NC_067785.1 · 14,426–15,169 bp · −
rps2 · NC_067785.1 · 15,400–16,110 bp · −
rpoC2 · NC_067785.1 · 16,434–20,516 bp · −
rpoC1 · NC_067785.1 · 20,677–23,504 bp · −
rpoB · NC_067785.1 · 23,531–26,743 bp · −
psbM · NC_067785.1 · 29,609–29,713 bp · −
trnD-GUC · NC_067785.1 · 30,250–30,323 bp · −
trnY-GUA · NC_067785.1 · 30,437–30,520 bp · −
trnE-UUC · NC_067785.1 · 30,580–30,652 bp · −
trnS-TGA · NC_067785.1 · 35,218–35,310 bp · −
trnM-CAU · NC_067785.1 · 36,265–36,338 bp · −
rps14 · NC_067785.1 · 36,494–36,796 bp · −
psaB · NC_067785.1 · 36,925–39,129 bp · −
psaA · NC_067785.1 · 39,155–41,407 bp · −
ycf3 · NC_067785.1 · 41,989–43,931 bp · −
rps4 · NC_067785.1 · 44,619–45,224 bp · −
trnT-UGU · NC_067785.1 · 45,622–45,694 bp · −
ndhJ · NC_067785.1 · 47,976–48,452 bp · −
ndhK · NC_067785.1 · 48,553–49,230 bp · −
ndhC · NC_067785.1 · 49,283–49,645 bp · −
trnV-UAC · NC_067785.1 · 50,602–51,254 bp · −
atpE · NC_067785.1 · 51,733–52,134 bp · −
atpB · NC_067785.1 · 52,131–53,627 bp · −
psbJ · NC_067785.1 · 62,972–63,094 bp · −
psbL · NC_067785.1 · 63,232–63,348 bp · −
psbF · NC_067785.1 · 63,372–63,491 bp · −
psbE · NC_067785.1 · 63,506–63,757 bp · −
trnW-CCA · NC_067785.1 · 65,203–65,276 bp · −
trnP-UGG · NC_067785.1 · 65,444–65,517 bp · −
rpl20 · NC_067785.1 · 67,263–67,649 bp · −
rps12 · NC_067785.1 · 68,410–68,523 bp · −
rps12 · NC_067785.1 · 95,767–96,560 bp · −
clpP · NC_067785.1 · 68,649–70,517 bp · −
psbN · NC_067785.1 · 72,833–72,964 bp · −
rpoA · NC_067785.1 · 76,392–77,405 bp · −
rps11 · NC_067785.1 · 77,477–77,893 bp · −
rpl36 · NC_067785.1 · 77,996–78,109 bp · −
infA · NC_067785.1 · 78,205–78,438 bp · −
rps8 · NC_067785.1 · 78,561–78,974 bp · −
rpl14 · NC_067785.1 · 79,147–79,515 bp · −
rpl16 · NC_067785.1 · 79,642–80,941 bp · −
rps3 · NC_067785.1 · 81,088–81,750 bp · −
rpl22 · NC_067785.1 · 81,735–82,208 bp · −
rps19 · NC_067785.1 · 82,268–82,546 bp · −
rpl2 · NC_067785.1 · 82,598–84,089 bp · −
rpl23 · NC_067785.1 · 84,108–84,389 bp · −
trnL-CAA · NC_067785.1 · 92,135–92,215 bp · −
ndhB · NC_067785.1 · 92,760–94,971 bp · −
rps7 · NC_067785.1 · 95,246–95,713 bp · −
rrn16 · NC_067785.1 · 98,479–99,971 bp · −
rrn23 · NC_067785.1 · 102,413–105,223 bp · −
rrn4.5 · NC_067785.1 · 105,322–105,586 bp · −
trnN-GUU · NC_067785.1 · 106,684–106,755 bp · −
ndhF · NC_067785.1 · 108,145–110,367 bp · −
ndhD · NC_067785.1 · 113,112–114,614 bp · −
psaC · NC_067785.1 · 114,733–114,978 bp · −
ndhE · NC_067785.1 · 115,228–115,533 bp · −
ndhG · NC_067785.1 · 115,750–116,280 bp · −
ndhI · NC_067785.1 · 116,646–117,152 bp · −
ndhA · NC_067785.1 · 117,239–119,391 bp · −
ndhH · NC_067785.1 · 119,393–120,574 bp · −
rps15 · NC_067785.1 · 120,675–120,947 bp · −
ycf1 · NC_067785.1 · 121,374–126,890 bp · −
trnR-ACG · NC_067785.1 · 127,863–127,936 bp · −
rrn5 · NC_067785.1 · 128,161–128,291 bp · −
trnA-UGC · NC_067785.1 · 131,754–132,632 bp · −
trnI-GAU · NC_067785.1 · 132,697–133,712 bp · −
trnV-GAC · NC_067785.1 · 135,720–135,791 bp · −
ycf15 · NC_067785.1 · 142,097–142,345 bp · −
ycf2 · NC_067785.1 · 142,388–149,254 bp · −
trnI-CAU · NC_067785.1 · 149,343–149,416 bp · −
psbK · NC_067785.1 · 7,413–7,583 bp · +
psbI · NC_067785.1 · 7,960–8,070 bp · +
trnG-UCC · NC_067785.1 · 8,922–9,678 bp · +
trnR-UCU · NC_067785.1 · 9,855–9,926 bp · +
trnC-GCA · NC_067785.1 · 27,831–27,901 bp · +
petN · NC_067785.1 · 28,731–28,826 bp · +
trnT-GGU · NC_067785.1 · 31,238–31,309 bp · +
psbD · NC_067785.1 · 32,557–33,618 bp · +
psbC · NC_067785.1 · 33,566–34,987 bp · +
psbZ · NC_067785.1 · 35,637–35,825 bp · +
trnG-GCC · NC_067785.1 · 36,051–36,121 bp · +
trnS-GGA · NC_067785.1 · 44,247–44,333 bp · +
trnL-UAA · NC_067785.1 · 46,365–46,948 bp · +
trnF-GAA · NC_067785.1 · 47,240–47,312 bp · +
trnM-CAU · NC_067785.1 · 51,443–51,515 bp · +
rbcL · NC_067785.1 · 54,439–55,884 bp · +
accD · NC_067785.1 · 56,591–58,057 bp · +
psaI · NC_067785.1 · 58,409–58,519 bp · +
ycf4 · NC_067785.1 · 58,958–59,512 bp · +
cemA · NC_067785.1 · 60,073–60,762 bp · +
petA · NC_067785.1 · 60,979–61,941 bp · +
petL · NC_067785.1 · 64,694–64,789 bp · +
petG · NC_067785.1 · 64,964–65,077 bp · +
psaJ · NC_067785.1 · 65,792–65,926 bp · +
rpl33 · NC_067785.1 · 66,398–66,598 bp · +
rps18 · NC_067785.1 · 66,746–67,051 bp · +
rps12 · NC_067785.1 · 137,411–138,204 bp · +
psbB · NC_067785.1 · 70,948–72,474 bp · +
psbT · NC_067785.1 · 72,665–72,772 bp · +
psbH · NC_067785.1 · 73,068–73,289 bp · +
petB · NC_067785.1 · 73,414–74,795 bp · +
petD · NC_067785.1 · 74,990–76,223 bp · +
trnI-CAU · NC_067785.1 · 84,555–84,628 bp · +
ycf2 · NC_067785.1 · 84,717–91,583 bp · +
ycf15 · NC_067785.1 · 91,626–91,874 bp · +
trnV-GAC · NC_067785.1 · 98,180–98,251 bp · +
trnI-GAU · NC_067785.1 · 100,259–101,274 bp · +
trnA-UGC · NC_067785.1 · 101,339–102,217 bp · +
rrn5 · NC_067785.1 · 105,680–105,810 bp · +
trnR-ACG · NC_067785.1 · 106,035–106,108 bp · +
ycf1 · NC_067785.1 · 107,081–108,199 bp · +
rpl32 · NC_067785.1 · 110,874–111,050 bp · +
trnL-UAG · NC_067785.1 · 111,784–111,863 bp · +
ccsA · NC_067785.1 · 111,963–112,934 bp · +
trnN-GUU · NC_067785.1 · 127,216–127,287 bp · +
rrn4.5 · NC_067785.1 · 128,385–128,649 bp · +
rrn23 · NC_067785.1 · 128,748–131,558 bp · +
rrn16 · NC_067785.1 · 134,000–135,492 bp · +
rps7 · NC_067785.1 · 138,258–138,725 bp · +
ndhB · NC_067785.1 · 139,000–141,211 bp · +
trnL-CAA · NC_067785.1 · 141,756–141,836 bp · +
rpl23 · NC_067785.1 · 149,582–149,863 bp · +
rpl2 · NC_067785.1 · 149,882–151,373 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Lagochilus ilicifolius
ANNOTATED PLASTOME
NC_067785.1
151,466 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37866 75733 113600 151466 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD trnI-CAU ycf2 ycf15 trnV-GAC trnI-GAU trnA-UGC rrn5 trnR-ACG ycf1 rpl32 trnL-UAG ccsA trnN-GUU rrn4.5 rrn23 rrn16 rps12 rps7 ndhB trnL-CAA rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-TGA trnM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnL-CAA ndhB rps7 rps12 rrn16 rrn23 rrn4.5 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 trnA-UGC trnI-GAU trnV-GAC ycf15 ycf2 trnI-CAU
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 2 75 74 Locate
psbA gene − 307 1365 1059 Locate
trnK-UUU gene − 1598 4152 2555 Locate
matK gene − 1897 3432 1536 Locate
rps16 gene − 4865 6003 1139 Locate
trnQ-UUG gene − 7005 7076 72 Locate
psbK gene + 7413 7583 171 Locate
psbI gene + 7960 8070 111 Locate
trnS-GCU gene − 8194 8281 88 Locate
trnG-UCC gene + 8922 9678 757 Locate
trnR-UCU gene + 9855 9926 72 Locate
atpA gene − 10023 11546 1524 Locate
atpF gene − 11635 12847 1213 Locate
atpH gene − 13208 13453 246 Locate
atpI gene − 14426 15169 744 Locate
rps2 gene − 15400 16110 711 Locate
rpoC2 gene − 16434 20516 4083 Locate
rpoC1 gene − 20677 23504 2828 Locate
rpoB gene − 23531 26743 3213 Locate
trnC-GCA gene + 27831 27901 71 Locate
petN gene + 28731 28826 96 Locate
psbM gene − 29609 29713 105 Locate
trnD-GUC gene − 30250 30323 74 Locate
trnY-GUA gene − 30437 30520 84 Locate
trnE-UUC gene − 30580 30652 73 Locate
trnT-GGU gene + 31238 31309 72 Locate
psbD gene + 32557 33618 1062 Locate
psbC gene + 33566 34987 1422 Locate
trnS-TGA gene − 35218 35310 93 Locate
psbZ gene + 35637 35825 189 Locate
trnG-GCC gene + 36051 36121 71 Locate
trnM-CAU gene − 36265 36338 74 Locate
rps14 gene − 36494 36796 303 Locate
psaB gene − 36925 39129 2205 Locate
psaA gene − 39155 41407 2253 Locate
ycf3 gene − 41989 43931 1943 Locate
trnS-GGA gene + 44247 44333 87 Locate
rps4 gene − 44619 45224 606 Locate
trnT-UGU gene − 45622 45694 73 Locate
trnL-UAA gene + 46365 46948 584 Locate
trnF-GAA gene + 47240 47312 73 Locate
ndhJ gene − 47976 48452 477 Locate
ndhK gene − 48553 49230 678 Locate
ndhC gene − 49283 49645 363 Locate
trnV-UAC gene − 50602 51254 653 Locate
trnM-CAU gene + 51443 51515 73 Locate
atpE gene − 51733 52134 402 Locate
atpB gene − 52131 53627 1497 Locate
rbcL gene + 54439 55884 1446 Locate
accD gene + 56591 58057 1467 Locate
psaI gene + 58409 58519 111 Locate
ycf4 gene + 58958 59512 555 Locate
cemA gene + 60073 60762 690 Locate
petA gene + 60979 61941 963 Locate
psbJ gene − 62972 63094 123 Locate
psbL gene − 63232 63348 117 Locate
psbF gene − 63372 63491 120 Locate
psbE gene − 63506 63757 252 Locate
petL gene + 64694 64789 96 Locate
petG gene + 64964 65077 114 Locate
trnW-CCA gene − 65203 65276 74 Locate
trnP-UGG gene − 65444 65517 74 Locate
psaJ gene + 65792 65926 135 Locate
rpl33 gene + 66398 66598 201 Locate
rps18 gene + 66746 67051 306 Locate
rpl20 gene − 67263 67649 387 Locate
rps12 gene − 68410 68523 114 Locate
clpP gene − 68649 70517 1869 Locate
psbB gene + 70948 72474 1527 Locate
psbT gene + 72665 72772 108 Locate
psbN gene − 72833 72964 132 Locate
psbH gene + 73068 73289 222 Locate
petB gene + 73414 74795 1382 Locate
petD gene + 74990 76223 1234 Locate
rpoA gene − 76392 77405 1014 Locate
rps11 gene − 77477 77893 417 Locate
rpl36 gene − 77996 78109 114 Locate
infA gene − 78205 78438 234 Locate
rps8 gene − 78561 78974 414 Locate
rpl14 gene − 79147 79515 369 Locate
rpl16 gene − 79642 80941 1300 Locate
rps3 gene − 81088 81750 663 Locate
rpl22 gene − 81735 82208 474 Locate
rps19 gene − 82268 82546 279 Locate
rpl2 gene − 82598 84089 1492 Locate
rpl23 gene − 84108 84389 282 Locate
trnI-CAU gene + 84555 84628 74 Locate
ycf2 gene + 84717 91583 6867 Locate
ycf15 gene + 91626 91874 249 Locate
trnL-CAA gene − 92135 92215 81 Locate
ndhB gene − 92760 94971 2212 Locate
rps7 gene − 95246 95713 468 Locate
rps12 gene − 95767 96560 794 Locate
trnV-GAC gene + 98180 98251 72 Locate
rrn16 gene − 98479 99971 1493 Locate
trnI-GAU gene + 100259 101274 1016 Locate
trnA-UGC gene + 101339 102217 879 Locate
rrn23 gene − 102413 105223 2811 Locate
rrn4.5 gene − 105322 105586 265 Locate
rrn5 gene + 105680 105810 131 Locate
trnR-ACG gene + 106035 106108 74 Locate
trnN-GUU gene − 106684 106755 72 Locate
ycf1 gene + 107081 108199 1119 Locate
ndhF gene − 108145 110367 2223 Locate
rpl32 gene + 110874 111050 177 Locate
trnL-UAG gene + 111784 111863 80 Locate
ccsA gene + 111963 112934 972 Locate
ndhD gene − 113112 114614 1503 Locate
psaC gene − 114733 114978 246 Locate
ndhE gene − 115228 115533 306 Locate
ndhG gene − 115750 116280 531 Locate
ndhI gene − 116646 117152 507 Locate
ndhA gene − 117239 119391 2153 Locate
ndhH gene − 119393 120574 1182 Locate
rps15 gene − 120675 120947 273 Locate
ycf1 gene − 121374 126890 5517 Locate
trnN-GUU gene + 127216 127287 72 Locate
trnR-ACG gene − 127863 127936 74 Locate
rrn5 gene − 128161 128291 131 Locate
rrn4.5 gene + 128385 128649 265 Locate
rrn23 gene + 128748 131558 2811 Locate
trnA-UGC gene − 131754 132632 879 Locate
trnI-GAU gene − 132697 133712 1016 Locate
rrn16 gene + 134000 135492 1493 Locate
trnV-GAC gene − 135720 135791 72 Locate
rps12 gene + 137411 138204 794 Locate
rps7 gene + 138258 138725 468 Locate
ndhB gene + 139000 141211 2212 Locate
trnL-CAA gene + 141756 141836 81 Locate
ycf15 gene − 142097 142345 249 Locate
ycf2 gene − 142388 149254 6867 Locate
trnI-CAU gene − 149343 149416 74 Locate
rpl23 gene + 149582 149863 282 Locate
rpl2 gene + 149882 151373 1492 Locate
Status Available
Accession NC_067785.1
Length 151,466 bp
GC content 38.6%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources