Lagochilus vvedenskyi chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · PQ126531.1 · 2–75 bp · −
psbA · PQ126531.1 · 316–1,374 bp · −
trnK-UUU · PQ126531.1 · 1,607–4,184 bp · −
matK · PQ126531.1 · 1,908–3,434 bp · −
rps16 · PQ126531.1 · 4,978–6,115 bp · −
trnQ-UUG · PQ126531.1 · 7,124–7,195 bp · −
trnS-GCU · PQ126531.1 · 8,341–8,428 bp · −
atpA · PQ126531.1 · 10,209–11,732 bp · −
atpF · PQ126531.1 · 11,820–13,031 bp · −
atpH · PQ126531.1 · 13,399–13,644 bp · −
atpI · PQ126531.1 · 14,621–15,364 bp · −
rps2 · PQ126531.1 · 15,595–16,305 bp · −
rpoC2 · PQ126531.1 · 16,637–20,707 bp · −
rpoC1 · PQ126531.1 · 20,862–23,692 bp · −
rpoB · PQ126531.1 · 23,719–26,931 bp · −
psbM · PQ126531.1 · 29,821–29,925 bp · −
trnD-GUC · PQ126531.1 · 30,392–30,465 bp · −
trnY-GUA · PQ126531.1 · 30,579–30,662 bp · −
trnE-UUC · PQ126531.1 · 30,722–30,794 bp · −
trnS-TGA · PQ126531.1 · 34,944–35,036 bp · −
trnM-CAU · PQ126531.1 · 35,996–36,069 bp · −
rps14 · PQ126531.1 · 36,219–36,521 bp · −
psaB · PQ126531.1 · 36,649–38,853 bp · −
psaA · PQ126531.1 · 38,879–41,131 bp · −
ycf3 · PQ126531.1 · 41,715–43,652 bp · −
rps4 · PQ126531.1 · 44,347–44,952 bp · −
trnT-UGU · PQ126531.1 · 45,350–45,422 bp · −
ndhJ · PQ126531.1 · 47,712–48,188 bp · −
ndhK · PQ126531.1 · 48,289–48,966 bp · −
ndhC · PQ126531.1 · 49,020–49,382 bp · −
trnV-UAC · PQ126531.1 · 50,339–50,992 bp · −
atpE · PQ126531.1 · 51,471–51,872 bp · −
atpB · PQ126531.1 · 51,869–53,365 bp · −
psbJ · PQ126531.1 · 62,718–62,840 bp · −
psbL · PQ126531.1 · 62,978–63,094 bp · −
psbF · PQ126531.1 · 63,118–63,237 bp · −
psbE · PQ126531.1 · 63,252–63,503 bp · −
trnW-CCA · PQ126531.1 · 64,985–65,058 bp · −
trnP-UGG · PQ126531.1 · 65,226–65,299 bp · −
rpl20 · PQ126531.1 · 67,050–67,436 bp · −
rps12 · PQ126531.1 · 68,199–68,312 bp · −
rps12 · PQ126531.1 · 95,500–96,292 bp · −
clpP · PQ126531.1 · 68,399–70,273 bp · −
psbN · PQ126531.1 · 72,597–72,728 bp · −
rpoA · PQ126531.1 · 76,135–77,148 bp · −
rps11 · PQ126531.1 · 77,220–77,636 bp · −
rpl36 · PQ126531.1 · 77,739–77,852 bp · −
infA · PQ126531.1 · 77,948–78,181 bp · −
rps8 · PQ126531.1 · 78,303–78,716 bp · −
rpl14 · PQ126531.1 · 78,889–79,257 bp · −
rpl16 · PQ126531.1 · 79,384–80,677 bp · −
rps3 · PQ126531.1 · 80,824–81,486 bp · −
rpl22 · PQ126531.1 · 81,471–81,950 bp · −
rps19 · PQ126531.1 · 82,010–82,078 bp · −
rpl2 · PQ126531.1 · 82,340–83,831 bp · −
rpl23 · PQ126531.1 · 83,850–84,131 bp · −
trnL-CAA · PQ126531.1 · 91,868–91,948 bp · −
ndhB · PQ126531.1 · 92,493–94,704 bp · −
rps7 · PQ126531.1 · 94,979–95,446 bp · −
rrn16 · PQ126531.1 · 98,212–99,704 bp · −
rrn23 · PQ126531.1 · 102,135–104,945 bp · −
rrn4.5 · PQ126531.1 · 105,044–105,308 bp · −
trnN-GUU · PQ126531.1 · 106,403–106,474 bp · −
ndhF · PQ126531.1 · 107,864–110,086 bp · −
ndhD · PQ126531.1 · 112,820–113,005 bp · −
psaC · PQ126531.1 · 114,441–114,686 bp · −
ndhE · PQ126531.1 · 114,936–115,241 bp · −
ndhG · PQ126531.1 · 115,457–115,987 bp · −
ndhI · PQ126531.1 · 116,361–116,867 bp · −
ndhA · PQ126531.1 · 116,954–119,118 bp · −
ndhH · PQ126531.1 · 119,120–120,301 bp · −
rps15 · PQ126531.1 · 120,402–120,674 bp · −
ycf1 · PQ126531.1 · 121,099–126,606 bp · −
trnR-ACG · PQ126531.1 · 127,576–127,649 bp · −
rrn5 · PQ126531.1 · 127,874–128,004 bp · −
trnA-UGC · PQ126531.1 · 131,463–132,341 bp · −
trnI-GAU · PQ126531.1 · 132,406–133,414 bp · −
trnV-GAC · PQ126531.1 · 135,423–135,494 bp · −
ycf15 · PQ126531.1 · 141,799–141,822 bp · −
ycf2 · PQ126531.1 · 142,090–148,947 bp · −
trnI-CAU · PQ126531.1 · 149,036–149,109 bp · −
psbK · PQ126531.1 · 7,541–7,726 bp · +
psbI · PQ126531.1 · 8,104–8,214 bp · +
trnG-UCC · PQ126531.1 · 9,110–9,864 bp · +
trnR-UCU · PQ126531.1 · 10,041–10,112 bp · +
trnC-GCA · PQ126531.1 · 28,048–28,118 bp · +
petN · PQ126531.1 · 28,941–29,036 bp · +
trnT-GGU · PQ126531.1 · 31,386–31,456 bp · +
psbD · PQ126531.1 · 32,284–33,345 bp · +
psbC · PQ126531.1 · 33,293–34,714 bp · +
psbZ · PQ126531.1 · 35,363–35,551 bp · +
trnG-GCC · PQ126531.1 · 35,783–35,853 bp · +
trnS-GGA · PQ126531.1 · 43,974–44,060 bp · +
trnL-UAA · PQ126531.1 · 46,100–46,678 bp · +
trnF-GAA · PQ126531.1 · 46,970–47,042 bp · +
trnM-CAU · PQ126531.1 · 51,181–51,253 bp · +
rbcL · PQ126531.1 · 54,179–55,624 bp · +
accD · PQ126531.1 · 56,314–57,771 bp · +
psaI · PQ126531.1 · 58,125–58,235 bp · +
ycf4 · PQ126531.1 · 58,674–59,228 bp · +
cemA · PQ126531.1 · 59,789–60,478 bp · +
petA · PQ126531.1 · 60,695–61,657 bp · +
petL · PQ126531.1 · 64,469–64,564 bp · +
petG · PQ126531.1 · 64,739–64,852 bp · +
psaJ · PQ126531.1 · 65,574–65,708 bp · +
rpl33 · PQ126531.1 · 66,183–66,383 bp · +
rps18 · PQ126531.1 · 66,532–66,837 bp · +
rps12 · PQ126531.1 · 137,114–137,906 bp · +
psbB · PQ126531.1 · 70,704–72,230 bp · +
psbT · PQ126531.1 · 72,422–72,523 bp · +
psbH · PQ126531.1 · 72,832–73,053 bp · +
petB · PQ126531.1 · 73,178–74,564 bp · +
petD · PQ126531.1 · 74,759–75,972 bp · +
trnI-CAU · PQ126531.1 · 84,297–84,370 bp · +
ycf2 · PQ126531.1 · 84,459–91,316 bp · +
ycf15 · PQ126531.1 · 91,410–91,607 bp · +
trnV-GAC · PQ126531.1 · 97,912–97,983 bp · +
trnI-GAU · PQ126531.1 · 99,992–101,000 bp · +
trnA-UGC · PQ126531.1 · 101,065–101,943 bp · +
rrn5 · PQ126531.1 · 105,402–105,532 bp · +
trnR-ACG · PQ126531.1 · 105,757–105,830 bp · +
ycf1 · PQ126531.1 · 106,800–107,918 bp · +
rpl32 · PQ126531.1 · 110,592–110,768 bp · +
trnL-UAG · PQ126531.1 · 111,493–111,572 bp · +
ccsA · PQ126531.1 · 111,670–112,641 bp · +
trnN-GUU · PQ126531.1 · 126,932–127,003 bp · +
rrn4.5 · PQ126531.1 · 128,098–128,362 bp · +
rrn23 · PQ126531.1 · 128,461–131,271 bp · +
rrn16 · PQ126531.1 · 133,702–135,194 bp · +
rps7 · PQ126531.1 · 137,960–138,427 bp · +
ndhB · PQ126531.1 · 138,702–140,913 bp · +
trnL-CAA · PQ126531.1 · 141,458–141,538 bp · +
rpl23 · PQ126531.1 · 149,275–149,556 bp · +
rpl2 · PQ126531.1 · 149,575–151,066 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Lagochilus vvedenskyi
ANNOTATED PLASTOME
PQ126531.1
151,159 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37790 75580 113369 151159 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD trnI-CAU ycf2 ycf15 trnV-GAC trnI-GAU trnA-UGC rrn5 trnR-ACG ycf1 rpl32 trnL-UAG ccsA trnN-GUU rrn4.5 rrn23 rrn16 rps12 rps7 ndhB trnL-CAA rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-TGA trnM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnL-CAA ndhB rps7 rps12 rrn16 rrn23 rrn4.5 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 trnA-UGC trnI-GAU trnV-GAC ycf15 ycf2 trnI-CAU
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 2 75 74 Locate
psbA gene − 316 1374 1059 Locate
trnK-UUU gene − 1607 4184 2578 Locate
matK gene − 1908 3434 1527 Locate
rps16 gene − 4978 6115 1138 Locate
trnQ-UUG gene − 7124 7195 72 Locate
psbK gene + 7541 7726 186 Locate
psbI gene + 8104 8214 111 Locate
trnS-GCU gene − 8341 8428 88 Locate
trnG-UCC gene + 9110 9864 755 Locate
trnR-UCU gene + 10041 10112 72 Locate
atpA gene − 10209 11732 1524 Locate
atpF gene − 11820 13031 1212 Locate
atpH gene − 13399 13644 246 Locate
atpI gene − 14621 15364 744 Locate
rps2 gene − 15595 16305 711 Locate
rpoC2 gene − 16637 20707 4071 Locate
rpoC1 gene − 20862 23692 2831 Locate
rpoB gene − 23719 26931 3213 Locate
trnC-GCA gene + 28048 28118 71 Locate
petN gene + 28941 29036 96 Locate
psbM gene − 29821 29925 105 Locate
trnD-GUC gene − 30392 30465 74 Locate
trnY-GUA gene − 30579 30662 84 Locate
trnE-UUC gene − 30722 30794 73 Locate
trnT-GGU gene + 31386 31456 71 Locate
psbD gene + 32284 33345 1062 Locate
psbC gene + 33293 34714 1422 Locate
trnS-TGA gene − 34944 35036 93 Locate
psbZ gene + 35363 35551 189 Locate
trnG-GCC gene + 35783 35853 71 Locate
trnM-CAU gene − 35996 36069 74 Locate
rps14 gene − 36219 36521 303 Locate
psaB gene − 36649 38853 2205 Locate
psaA gene − 38879 41131 2253 Locate
ycf3 gene − 41715 43652 1938 Locate
trnS-GGA gene + 43974 44060 87 Locate
rps4 gene − 44347 44952 606 Locate
trnT-UGU gene − 45350 45422 73 Locate
trnL-UAA gene + 46100 46678 579 Locate
trnF-GAA gene + 46970 47042 73 Locate
ndhJ gene − 47712 48188 477 Locate
ndhK gene − 48289 48966 678 Locate
ndhC gene − 49020 49382 363 Locate
trnV-UAC gene − 50339 50992 654 Locate
trnM-CAU gene + 51181 51253 73 Locate
atpE gene − 51471 51872 402 Locate
atpB gene − 51869 53365 1497 Locate
rbcL gene + 54179 55624 1446 Locate
accD gene + 56314 57771 1458 Locate
psaI gene + 58125 58235 111 Locate
ycf4 gene + 58674 59228 555 Locate
cemA gene + 59789 60478 690 Locate
petA gene + 60695 61657 963 Locate
psbJ gene − 62718 62840 123 Locate
psbL gene − 62978 63094 117 Locate
psbF gene − 63118 63237 120 Locate
psbE gene − 63252 63503 252 Locate
petL gene + 64469 64564 96 Locate
petG gene + 64739 64852 114 Locate
trnW-CCA gene − 64985 65058 74 Locate
trnP-UGG gene − 65226 65299 74 Locate
psaJ gene + 65574 65708 135 Locate
rpl33 gene + 66183 66383 201 Locate
rps18 gene + 66532 66837 306 Locate
rpl20 gene − 67050 67436 387 Locate
rps12 gene − 68199 68312 114 Locate
clpP gene − 68399 70273 1875 Locate
psbB gene + 70704 72230 1527 Locate
psbT gene + 72422 72523 102 Locate
psbN gene − 72597 72728 132 Locate
psbH gene + 72832 73053 222 Locate
petB gene + 73178 74564 1387 Locate
petD gene + 74759 75972 1214 Locate
rpoA gene − 76135 77148 1014 Locate
rps11 gene − 77220 77636 417 Locate
rpl36 gene − 77739 77852 114 Locate
infA gene − 77948 78181 234 Locate
rps8 gene − 78303 78716 414 Locate
rpl14 gene − 78889 79257 369 Locate
rpl16 gene − 79384 80677 1294 Locate
rps3 gene − 80824 81486 663 Locate
rpl22 gene − 81471 81950 480 Locate
rps19 gene − 82010 82078 69 Locate
rpl2 gene − 82340 83831 1492 Locate
rpl23 gene − 83850 84131 282 Locate
trnI-CAU gene + 84297 84370 74 Locate
ycf2 gene + 84459 91316 6858 Locate
ycf15 gene + 91410 91607 198 Locate
trnL-CAA gene − 91868 91948 81 Locate
ndhB gene − 92493 94704 2212 Locate
rps7 gene − 94979 95446 468 Locate
rps12 gene − 95500 96292 793 Locate
trnV-GAC gene + 97912 97983 72 Locate
rrn16 gene − 98212 99704 1493 Locate
trnI-GAU gene + 99992 101000 1009 Locate
trnA-UGC gene + 101065 101943 879 Locate
rrn23 gene − 102135 104945 2811 Locate
rrn4.5 gene − 105044 105308 265 Locate
rrn5 gene + 105402 105532 131 Locate
trnR-ACG gene + 105757 105830 74 Locate
trnN-GUU gene − 106403 106474 72 Locate
ycf1 gene + 106800 107918 1119 Locate
ndhF gene − 107864 110086 2223 Locate
rpl32 gene + 110592 110768 177 Locate
trnL-UAG gene + 111493 111572 80 Locate
ccsA gene + 111670 112641 972 Locate
ndhD gene − 112820 113005 186 Locate
psaC gene − 114441 114686 246 Locate
ndhE gene − 114936 115241 306 Locate
ndhG gene − 115457 115987 531 Locate
ndhI gene − 116361 116867 507 Locate
ndhA gene − 116954 119118 2165 Locate
ndhH gene − 119120 120301 1182 Locate
rps15 gene − 120402 120674 273 Locate
ycf1 gene − 121099 126606 5508 Locate
trnN-GUU gene + 126932 127003 72 Locate
trnR-ACG gene − 127576 127649 74 Locate
rrn5 gene − 127874 128004 131 Locate
rrn4.5 gene + 128098 128362 265 Locate
rrn23 gene + 128461 131271 2811 Locate
trnA-UGC gene − 131463 132341 879 Locate
trnI-GAU gene − 132406 133414 1009 Locate
rrn16 gene + 133702 135194 1493 Locate
trnV-GAC gene − 135423 135494 72 Locate
rps12 gene + 137114 137906 793 Locate
rps7 gene + 137960 138427 468 Locate
ndhB gene + 138702 140913 2212 Locate
trnL-CAA gene + 141458 141538 81 Locate
ycf15 gene − 141799 141822 24 Locate
ycf2 gene − 142090 148947 6858 Locate
trnI-CAU gene − 149036 149109 74 Locate
rpl23 gene + 149275 149556 282 Locate
rpl2 gene + 149575 151066 1492 Locate
Status Available
Accession PQ126531.1
Length 151,159 bp
GC content 38.6%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources