Lagopsis darwiniana chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · PX283822.1 · 2–75 bp · −
psbA · PX283822.1 · 300–1,358 bp · −
trnK-UUU · PX283822.1 · 1,591–4,178 bp · −
matK · PX283822.1 · 1,893–3,428 bp · −
rps16 · PX283822.1 · 5,093–6,236 bp · −
trnQ-UUG · PX283822.1 · 6,912–6,984 bp · −
trnS-GCU · PX283822.1 · 8,130–8,217 bp · −
atpA · PX283822.1 · 10,011–11,534 bp · −
atpF · PX283822.1 · 11,622–12,831 bp · −
atpH · PX283822.1 · 13,202–13,447 bp · −
atpI · PX283822.1 · 14,382–15,125 bp · −
rps2 · PX283822.1 · 15,356–16,066 bp · −
rpoC2 · PX283822.1 · 16,286–20,464 bp · −
rpoC1 · PX283822.1 · 20,631–23,463 bp · −
rpoB · PX283822.1 · 23,490–26,702 bp · −
psbM · PX283822.1 · 29,567–29,671 bp · −
trnD-GUC · PX283822.1 · 30,201–30,274 bp · −
trnY-GUA · PX283822.1 · 30,389–30,472 bp · −
trnE-UUC · PX283822.1 · 30,532–30,604 bp · −
trnS-UGA · PX283822.1 · 35,054–35,146 bp · −
trnfM-CAU · PX283822.1 · 36,107–36,180 bp · −
rps14 · PX283822.1 · 36,330–36,632 bp · −
psaB · PX283822.1 · 36,760–38,964 bp · −
psaA · PX283822.1 · 38,990–41,242 bp · −
ycf3 · PX283822.1 · 41,968–43,901 bp · −
rps4 · PX283822.1 · 44,590–45,195 bp · −
trnT-UGU · PX283822.1 · 45,581–45,653 bp · −
ndhJ · PX283822.1 · 47,938–48,414 bp · −
ndhK · PX283822.1 · 48,515–49,192 bp · −
ndhC · PX283822.1 · 49,245–49,607 bp · −
trnV-UAC · PX283822.1 · 50,656–51,307 bp · −
atpE · PX283822.1 · 51,786–52,187 bp · −
atpB · PX283822.1 · 52,184–53,680 bp · −
psbJ · PX283822.1 · 63,391–63,513 bp · −
psbL · PX283822.1 · 63,651–63,767 bp · −
psbF · PX283822.1 · 63,791–63,910 bp · −
psbE · PX283822.1 · 63,925–64,176 bp · −
trnW-CCA · PX283822.1 · 65,612–65,685 bp · −
trnP-UGG · PX283822.1 · 65,837–65,910 bp · −
rpl20 · PX283822.1 · 67,661–68,047 bp · −
rps12 · PX283822.1 · 68,810–68,923 bp · −
rps12 · PX283822.1 · 96,205–96,998 bp · −
clpP1 · PX283822.1 · 69,055–70,924 bp · −
pbf1 · PX283822.1 · 73,245–73,376 bp · −
rpoA · PX283822.1 · 76,816–77,835 bp · −
rps11 · PX283822.1 · 77,907–78,323 bp · −
rpl36 · PX283822.1 · 78,426–78,539 bp · −
infA · PX283822.1 · 78,635–78,874 bp · −
rps8 · PX283822.1 · 78,997–79,410 bp · −
rpl14 · PX283822.1 · 79,592–79,960 bp · −
rpl16 · PX283822.1 · 80,087–81,379 bp · −
rps3 · PX283822.1 · 81,526–82,188 bp · −
rpl22 · PX283822.1 · 82,173–82,637 bp · −
rps19 · PX283822.1 · 82,697–82,975 bp · −
rpl2 · PX283822.1 · 83,028–84,518 bp · −
rpl23 · PX283822.1 · 84,537–84,818 bp · −
trnM-CAU · PX283822.1 · 84,984–85,057 bp · −
trnL-CAA · PX283822.1 · 92,573–92,653 bp · −
ndhB · PX283822.1 · 93,198–95,409 bp · −
rps7 · PX283822.1 · 95,684–96,151 bp · −
trnN-GUU · PX283822.1 · 107,105–107,176 bp · −
ndhF · PX283822.1 · 108,566–110,788 bp · −
ndhD · PX283822.1 · 113,518–115,020 bp · −
psaC · PX283822.1 · 115,139–115,384 bp · −
ndhE · PX283822.1 · 115,650–115,955 bp · −
ndhG · PX283822.1 · 116,165–116,695 bp · −
ndhI · PX283822.1 · 117,068–117,574 bp · −
ndhA · PX283822.1 · 117,661–119,835 bp · −
ndhH · PX283822.1 · 119,837–121,018 bp · −
rps15 · PX283822.1 · 121,119–121,391 bp · −
ycf1 · PX283822.1 · 121,778–127,276 bp · −
trnR-ACG · PX283822.1 · 128,246–128,319 bp · −
rrn5 · PX283822.1 · 128,554–128,674 bp · −
rrn4.5 · PX283822.1 · 128,930–129,032 bp · −
rrn23 · PX283822.1 · 129,131–131,941 bp · −
trnA-UGC · PX283822.1 · 132,133–133,011 bp · −
trnI-GAU · PX283822.1 · 133,076–134,084 bp · −
rrn16 · PX283822.1 · 134,374–135,864 bp · −
trnV-GAC · PX283822.1 · 136,092–136,163 bp · −
ycf2 · PX283822.1 · 142,757–149,632 bp · −
psbK · PX283822.1 · 7,321–7,506 bp · +
psbI · PX283822.1 · 7,891–8,001 bp · +
trnS-CGA · PX283822.1 · 8,900–9,666 bp · +
trnR-UCU · PX283822.1 · 9,843–9,914 bp · +
trnC-GCA · PX283822.1 · 27,798–27,868 bp · +
petN · PX283822.1 · 28,693–28,782 bp · +
trnT-GGU · PX283822.1 · 31,176–31,247 bp · +
psbD · PX283822.1 · 32,391–33,452 bp · +
psbC · PX283822.1 · 33,400–34,821 bp · +
psbZ · PX283822.1 · 35,473–35,661 bp · +
trnG-GCC · PX283822.1 · 35,888–35,958 bp · +
trnS-GGA · PX283822.1 · 44,218–44,304 bp · +
trnL-UAA · PX283822.1 · 46,329–46,902 bp · +
trnF-GAA · PX283822.1 · 47,194–47,266 bp · +
trnM-CAU · PX283822.1 · 51,496–51,568 bp · +
rbcL · PX283822.1 · 54,495–55,940 bp · +
accD · PX283822.1 · 56,630–58,096 bp · +
psaI · PX283822.1 · 58,786–58,896 bp · +
ycf4 · PX283822.1 · 59,336–59,890 bp · +
cemA · PX283822.1 · 60,464–61,153 bp · +
petA · PX283822.1 · 61,370–62,332 bp · +
petL · PX283822.1 · 65,102–65,197 bp · +
petG · PX283822.1 · 65,373–65,486 bp · +
psaJ · PX283822.1 · 66,185–66,319 bp · +
rpl33 · PX283822.1 · 66,792–66,992 bp · +
rps18 · PX283822.1 · 67,140–67,445 bp · +
rps12 · PX283822.1 · 137,780–138,573 bp · +
psbB · PX283822.1 · 71,356–72,882 bp · +
psbT · PX283822.1 · 73,077–73,184 bp · +
psbH · PX283822.1 · 73,480–73,701 bp · +
petB · PX283822.1 · 73,826–75,208 bp · +
petD · PX283822.1 · 75,423–76,647 bp · +
ycf2 · PX283822.1 · 85,146–92,021 bp · +
trnV-GAC · PX283822.1 · 98,615–98,686 bp · +
rrn16 · PX283822.1 · 98,914–100,404 bp · +
trnI-GAU · PX283822.1 · 100,694–101,702 bp · +
trnA-UGC · PX283822.1 · 101,767–102,645 bp · +
rrn23 · PX283822.1 · 102,837–105,647 bp · +
rrn4.5 · PX283822.1 · 105,746–105,848 bp · +
rrn5 · PX283822.1 · 106,104–106,224 bp · +
trnR-ACG · PX283822.1 · 106,459–106,532 bp · +
rpl32 · PX283822.1 · 111,296–111,472 bp · +
trnL-UAG · PX283822.1 · 112,197–112,276 bp · +
ccsA · PX283822.1 · 112,377–113,339 bp · +
trnN-GUU · PX283822.1 · 127,602–127,673 bp · +
rps7 · PX283822.1 · 138,627–139,094 bp · +
ndhB · PX283822.1 · 139,369–141,580 bp · +
trnL-CAA · PX283822.1 · 142,125–142,205 bp · +
trnM-CAU · PX283822.1 · 149,721–149,794 bp · +
rpl23 · PX283822.1 · 149,960–150,241 bp · +
rpl2 · PX283822.1 · 150,260–151,750 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Lagopsis darwiniana
ANNOTATED PLASTOME
PX283822.1
151,844 bp · 130 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37961 75922 113883 151844 bp
Forward strand 5′ → 3′
psbK psbI trnS-CGA trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnM-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP1 pbf1 rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnM-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
131 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 2 75 74 Locate
psbA gene − 300 1358 1059 Locate
trnK-UUU gene − 1591 4178 2588 Locate
matK gene − 1893 3428 1536 Locate
rps16 gene − 5093 6236 1144 Locate
trnQ-UUG gene − 6912 6984 73 Locate
psbK gene + 7321 7506 186 Locate
psbI gene + 7891 8001 111 Locate
trnS-GCU gene − 8130 8217 88 Locate
trnS-CGA gene + 8900 9666 767 Locate
trnR-UCU gene + 9843 9914 72 Locate
atpA gene − 10011 11534 1524 Locate
atpF gene − 11622 12831 1210 Locate
atpH gene − 13202 13447 246 Locate
atpI gene − 14382 15125 744 Locate
rps2 gene − 15356 16066 711 Locate
rpoC2 gene − 16286 20464 4179 Locate
rpoC1 gene − 20631 23463 2833 Locate
rpoB gene − 23490 26702 3213 Locate
trnC-GCA gene + 27798 27868 71 Locate
petN gene + 28693 28782 90 Locate
psbM gene − 29567 29671 105 Locate
trnD-GUC gene − 30201 30274 74 Locate
trnY-GUA gene − 30389 30472 84 Locate
trnE-UUC gene − 30532 30604 73 Locate
trnT-GGU gene + 31176 31247 72 Locate
psbD gene + 32391 33452 1062 Locate
psbC gene + 33400 34821 1422 Locate
trnS-UGA gene − 35054 35146 93 Locate
psbZ gene + 35473 35661 189 Locate
trnG-GCC gene + 35888 35958 71 Locate
trnfM-CAU gene − 36107 36180 74 Locate
rps14 gene − 36330 36632 303 Locate
psaB gene − 36760 38964 2205 Locate
psaA gene − 38990 41242 2253 Locate
ycf3 gene − 41968 43901 1934 Locate
trnS-GGA gene + 44218 44304 87 Locate
rps4 gene − 44590 45195 606 Locate
trnT-UGU gene − 45581 45653 73 Locate
trnL-UAA gene + 46329 46902 574 Locate
trnF-GAA gene + 47194 47266 73 Locate
ndhJ gene − 47938 48414 477 Locate
ndhK gene − 48515 49192 678 Locate
ndhC gene − 49245 49607 363 Locate
trnV-UAC gene − 50656 51307 652 Locate
trnM-CAU gene + 51496 51568 73 Locate
atpE gene − 51786 52187 402 Locate
atpB gene − 52184 53680 1497 Locate
rbcL gene + 54495 55940 1446 Locate
accD gene + 56630 58096 1467 Locate
psaI gene + 58786 58896 111 Locate
ycf4 gene + 59336 59890 555 Locate
cemA gene + 60464 61153 690 Locate
petA gene + 61370 62332 963 Locate
psbJ gene − 63391 63513 123 Locate
psbL gene − 63651 63767 117 Locate
psbF gene − 63791 63910 120 Locate
psbE gene − 63925 64176 252 Locate
petL gene + 65102 65197 96 Locate
petG gene + 65373 65486 114 Locate
trnW-CCA gene − 65612 65685 74 Locate
trnP-UGG gene − 65837 65910 74 Locate
psaJ gene + 66185 66319 135 Locate
rpl33 gene + 66792 66992 201 Locate
rps18 gene + 67140 67445 306 Locate
rpl20 gene − 67661 68047 387 Locate
rps12 gene − 68810 68923 114 Locate
clpP1 gene − 69055 70924 1870 Locate
psbB gene + 71356 72882 1527 Locate
psbT gene + 73077 73184 108 Locate
pbf1 gene − 73245 73376 132 Locate
psbH gene + 73480 73701 222 Locate
petB gene + 73826 75208 1383 Locate
petD gene + 75423 76647 1225 Locate
rpoA gene − 76816 77835 1020 Locate
rps11 gene − 77907 78323 417 Locate
rpl36 gene − 78426 78539 114 Locate
infA gene − 78635 78874 240 Locate
rps8 gene − 78997 79410 414 Locate
rpl14 gene − 79592 79960 369 Locate
rpl16 gene − 80087 81379 1293 Locate
rps3 gene − 81526 82188 663 Locate
rpl22 gene − 82173 82637 465 Locate
rps19 gene − 82697 82975 279 Locate
rpl2 gene − 83028 84518 1491 Locate
rpl23 gene − 84537 84818 282 Locate
trnM-CAU gene − 84984 85057 74 Locate
ycf2 gene + 85146 92021 6876 Locate
trnL-CAA gene − 92573 92653 81 Locate
ndhB gene − 93198 95409 2212 Locate
rps7 gene − 95684 96151 468 Locate
rps12 gene − 96205 96998 794 Locate
trnV-GAC gene + 98615 98686 72 Locate
rrn16 gene + 98914 100404 1491 Locate
trnI-GAU gene + 100694 101702 1009 Locate
trnA-UGC gene + 101767 102645 879 Locate
rrn23 gene + 102837 105647 2811 Locate
rrn4.5 gene + 105746 105848 103 Locate
rrn5 gene + 106104 106224 121 Locate
trnR-ACG gene + 106459 106532 74 Locate
trnN-GUU gene − 107105 107176 72 Locate
ndhF gene − 108566 110788 2223 Locate
rpl32 gene + 111296 111472 177 Locate
trnL-UAG gene + 112197 112276 80 Locate
ccsA gene + 112377 113339 963 Locate
ndhD gene − 113518 115020 1503 Locate
psaC gene − 115139 115384 246 Locate
ndhE gene − 115650 115955 306 Locate
ndhG gene − 116165 116695 531 Locate
ndhI gene − 117068 117574 507 Locate
ndhA gene − 117661 119835 2175 Locate
ndhH gene − 119837 121018 1182 Locate
rps15 gene − 121119 121391 273 Locate
ycf1 gene − 121778 127276 5499 Locate
trnN-GUU gene + 127602 127673 72 Locate
trnR-ACG gene − 128246 128319 74 Locate
rrn5 gene − 128554 128674 121 Locate
rrn4.5 gene − 128930 129032 103 Locate
rrn23 gene − 129131 131941 2811 Locate
trnA-UGC gene − 132133 133011 879 Locate
trnI-GAU gene − 133076 134084 1009 Locate
rrn16 gene − 134374 135864 1491 Locate
trnV-GAC gene − 136092 136163 72 Locate
rps12 gene + 137780 138573 794 Locate
rps7 gene + 138627 139094 468 Locate
ndhB gene + 139369 141580 2212 Locate
trnL-CAA gene + 142125 142205 81 Locate
ycf2 gene − 142757 149632 6876 Locate
trnM-CAU gene + 149721 149794 74 Locate
rpl23 gene + 149960 150241 282 Locate
rpl2 gene + 150260 151750 1491 Locate
Status Available
Accession PX283822.1
Length 151,844 bp
GC content 38.4%
Annotated genes 130
Gene sequence records 8
Translation Rna 37 Photosystem Ii 14 Other 13 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources