Lepechinia chamaedryoides chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
LSC
IR
SSC
IR
trnH-GUG · NC_084051.1 · 2–75 bp · −
psbA · NC_084051.1 · 383–1,441 bp · −
trnK-UUU · NC_084051.1 · 1,672–4,266 bp · −
matK · NC_084051.1 · 1,993–3,528 bp · −
rps16 · NC_084051.1 · 4,840–5,937 bp · −
trnQ-UUG · NC_084051.1 · 6,859–6,930 bp · −
trnS-GCU · NC_084051.1 · 8,172–8,259 bp · −
atpA · NC_084051.1 · 10,077–11,600 bp · −
atpF · NC_084051.1 · 11,696–12,952 bp · −
atpH · NC_084051.1 · 13,228–13,473 bp · −
atpI · NC_084051.1 · 14,473–15,216 bp · −
rps2 · NC_084051.1 · 15,440–16,150 bp · −
rpoC2 · NC_084051.1 · 16,361–20,548 bp · −
rpoC1 · NC_084051.1 · 20,713–23,530 bp · −
rpoB · NC_084051.1 · 23,557–26,769 bp · −
psbM · NC_084051.1 · 29,238–29,342 bp · −
trnD-GUC · NC_084051.1 · 29,857–29,930 bp · −
trnY-GUA · NC_084051.1 · 30,048–30,131 bp · −
trnE-UUC · NC_084051.1 · 30,202–30,274 bp · −
trnS-UGA · NC_084051.1 · 34,940–35,032 bp · −
trnfM-CAU · NC_084051.1 · 36,059–36,132 bp · −
rps14 · NC_084051.1 · 36,274–36,576 bp · −
psaB · NC_084051.1 · 36,699–38,903 bp · −
psaA · NC_084051.1 · 38,929–41,181 bp · −
ycf3 · NC_084051.1 · 41,972–43,922 bp · −
rps4 · NC_084051.1 · 45,119–45,724 bp · −
trnT-UGU · NC_084051.1 · 46,084–46,156 bp · −
ndhJ · NC_084051.1 · 48,341–48,817 bp · −
ndhK · NC_084051.1 · 48,928–49,605 bp · −
ndhC · NC_084051.1 · 49,657–50,019 bp · −
trnV-UAC · NC_084051.1 · 50,974–51,623 bp · −
atpE · NC_084051.1 · 52,087–52,488 bp · −
atpB · NC_084051.1 · 52,485–53,981 bp · −
psbJ · NC_084051.1 · 63,534–63,656 bp · −
psbL · NC_084051.1 · 63,791–63,907 bp · −
psbF · NC_084051.1 · 63,931–64,050 bp · −
psbE · NC_084051.1 · 64,065–64,316 bp · −
trnW-CCA · NC_084051.1 · 65,714–65,787 bp · −
trnP-UGG · NC_084051.1 · 65,961–66,034 bp · −
rpl20 · NC_084051.1 · 67,819–68,205 bp · −
rps12 · NC_084051.1 · 69,025–69,138 bp · −
rps12 · NC_084051.1 · 96,400–97,180 bp · −
clpP · NC_084051.1 · 69,262–71,173 bp · −
psbN · NC_084051.1 · 73,499–73,630 bp · −
rpoA · NC_084051.1 · 77,005–78,012 bp · −
rps11 · NC_084051.1 · 78,083–78,499 bp · −
rpl36 · NC_084051.1 · 78,609–78,722 bp · −
infA · NC_084051.1 · 78,818–79,051 bp · −
rps8 · NC_084051.1 · 79,172–79,576 bp · −
rpl14 · NC_084051.1 · 79,753–80,121 bp · −
rpl16 · NC_084051.1 · 80,254–81,519 bp · −
rps3 · NC_084051.1 · 81,678–82,340 bp · −
rpl22 · NC_084051.1 · 82,325–82,792 bp · −
rps19 · NC_084051.1 · 82,862–83,140 bp · −
rpl2 · NC_084051.1 · 83,200–84,689 bp · −
rpl23 · NC_084051.1 · 84,708–84,989 bp · −
trnI-CAU · NC_084051.1 · 85,155–85,228 bp · −
trnL-CAA · NC_084051.1 · 92,756–92,836 bp · −
ndhB · NC_084051.1 · 93,397–95,550 bp · −
rps7 · NC_084051.1 · 95,879–96,346 bp · −
trnN-GUU · NC_084051.1 · 107,266–107,337 bp · −
ndhF · NC_084051.1 · 108,705–110,918 bp · −
ndhD · NC_084051.1 · 113,672–115,216 bp · −
psaC · NC_084051.1 · 115,312–115,557 bp · −
ndhE · NC_084051.1 · 115,808–116,113 bp · −
ndhG · NC_084051.1 · 116,326–116,856 bp · −
ndhI · NC_084051.1 · 117,239–117,745 bp · −
ndhA · NC_084051.1 · 117,826–119,930 bp · −
ndhH · NC_084051.1 · 119,932–121,167 bp · −
rps15 · NC_084051.1 · 121,213–121,485 bp · −
ycf1 · NC_084051.1 · 121,886–127,543 bp · −
trnR-ACG · NC_084051.1 · 128,358–128,431 bp · −
rrn5 · NC_084051.1 · 128,675–128,795 bp · −
rrn4.5 · NC_084051.1 · 129,051–129,153 bp · −
rrn23 · NC_084051.1 · 129,254–132,065 bp · −
trnA-UGC · NC_084051.1 · 132,231–133,108 bp · −
trnI-GAU · NC_084051.1 · 133,173–134,191 bp · −
rrn16 · NC_084051.1 · 134,490–135,980 bp · −
trnV-GAC · NC_084051.1 · 136,207–136,278 bp · −
ycf15 · NC_084051.1 · 142,604–142,852 bp · −
ycf2 · NC_084051.1 · 142,943–149,782 bp · −
psbK · NC_084051.1 · 7,318–7,503 bp · +
psbI · NC_084051.1 · 7,899–8,009 bp · +
trnG-UCC · NC_084051.1 · 8,957–9,720 bp · +
trnR-UCU · NC_084051.1 · 9,900–9,971 bp · +
trnC-GCA · NC_084051.1 · 27,912–27,982 bp · +
petN · NC_084051.1 · 28,140–28,235 bp · +
trnT-GGU · NC_084051.1 · 30,873–30,944 bp · +
psbD · NC_084051.1 · 32,263–33,324 bp · +
psbC · NC_084051.1 · 33,272–34,693 bp · +
psbZ · NC_084051.1 · 35,367–35,555 bp · +
trnG-GCC · NC_084051.1 · 35,833–35,903 bp · +
trnS-GGA · NC_084051.1 · 44,750–44,836 bp · +
trnL-UAA · NC_084051.1 · 46,787–47,356 bp · +
trnF-GAA · NC_084051.1 · 47,646–47,718 bp · +
trnM-CAU · NC_084051.1 · 51,804–51,876 bp · +
rbcL · NC_084051.1 · 54,760–56,214 bp · +
accD · NC_084051.1 · 56,852–58,393 bp · +
psaI · NC_084051.1 · 58,857–58,967 bp · +
ycf4 · NC_084051.1 · 59,412–59,966 bp · +
cemA · NC_084051.1 · 60,620–61,309 bp · +
petA · NC_084051.1 · 61,524–62,486 bp · +
petL · NC_084051.1 · 65,213–65,308 bp · +
petG · NC_084051.1 · 65,486–65,599 bp · +
psaJ · NC_084051.1 · 66,276–66,467 bp · +
rpl33 · NC_084051.1 · 66,903–67,103 bp · +
rps18 · NC_084051.1 · 67,276–67,581 bp · +
rps12 · NC_084051.1 · 137,919–138,699 bp · +
psbB · NC_084051.1 · 71,622–73,148 bp · +
psbT · NC_084051.1 · 73,331–73,438 bp · +
psbH · NC_084051.1 · 73,718–73,957 bp · +
petB · NC_084051.1 · 74,083–75,458 bp · +
petD · NC_084051.1 · 75,641–76,828 bp · +
ycf2 · NC_084051.1 · 85,317–92,156 bp · +
ycf15 · NC_084051.1 · 92,247–92,495 bp · +
trnV-GAC · NC_084051.1 · 98,821–98,892 bp · +
rrn16 · NC_084051.1 · 99,119–100,609 bp · +
trnI-GAU · NC_084051.1 · 100,908–101,926 bp · +
trnA-UGC · NC_084051.1 · 101,991–102,868 bp · +
rrn23 · NC_084051.1 · 103,034–105,845 bp · +
rrn4.5 · NC_084051.1 · 105,946–106,048 bp · +
rrn5 · NC_084051.1 · 106,304–106,424 bp · +
trnR-ACG · NC_084051.1 · 106,668–106,741 bp · +
ycf1 · NC_084051.1 · 107,556–108,728 bp · +
rpl32 · NC_084051.1 · 111,378–111,548 bp · +
trnL-UAG · NC_084051.1 · 112,298–112,377 bp · +
ccsA · NC_084051.1 · 112,471–113,448 bp · +
trnN-GUU · NC_084051.1 · 127,762–127,833 bp · +
rps7 · NC_084051.1 · 138,753–139,220 bp · +
ndhB · NC_084051.1 · 139,549–141,702 bp · +
trnL-CAA · NC_084051.1 · 142,263–142,343 bp · +
trnI-CAU · NC_084051.1 · 149,871–149,944 bp · +
rpl23 · NC_084051.1 · 150,110–150,391 bp · +
rpl2 · NC_084051.1 · 150,410–151,899 bp · +
rps19 · NC_084051.1 · 151,959–152,001 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Lepechinia chamaedryoides
ANNOTATED PLASTOME
NC_084051.1
152,014 bp · 134 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38004 76007 114010 152014 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG ycf1 rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2 rps19
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
135 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 2 75 74 Locate
psbA gene − 383 1441 1059 Locate
trnK-UUU gene − 1672 4266 2595 Locate
matK gene − 1993 3528 1536 Locate
rps16 gene − 4840 5937 1098 Locate
trnQ-UUG gene − 6859 6930 72 Locate
psbK gene + 7318 7503 186 Locate
psbI gene + 7899 8009 111 Locate
trnS-GCU gene − 8172 8259 88 Locate
trnG-UCC gene + 8957 9720 764 Locate
trnR-UCU gene + 9900 9971 72 Locate
atpA gene − 10077 11600 1524 Locate
atpF gene − 11696 12952 1257 Locate
atpH gene − 13228 13473 246 Locate
atpI gene − 14473 15216 744 Locate
rps2 gene − 15440 16150 711 Locate
rpoC2 gene − 16361 20548 4188 Locate
rpoC1 gene − 20713 23530 2818 Locate
rpoB gene − 23557 26769 3213 Locate
trnC-GCA gene + 27912 27982 71 Locate
petN gene + 28140 28235 96 Locate
psbM gene − 29238 29342 105 Locate
trnD-GUC gene − 29857 29930 74 Locate
trnY-GUA gene − 30048 30131 84 Locate
trnE-UUC gene − 30202 30274 73 Locate
trnT-GGU gene + 30873 30944 72 Locate
psbD gene + 32263 33324 1062 Locate
psbC gene + 33272 34693 1422 Locate
trnS-UGA gene − 34940 35032 93 Locate
psbZ gene + 35367 35555 189 Locate
trnG-GCC gene + 35833 35903 71 Locate
trnfM-CAU gene − 36059 36132 74 Locate
rps14 gene − 36274 36576 303 Locate
psaB gene − 36699 38903 2205 Locate
psaA gene − 38929 41181 2253 Locate
ycf3 gene − 41972 43922 1951 Locate
trnS-GGA gene + 44750 44836 87 Locate
rps4 gene − 45119 45724 606 Locate
trnT-UGU gene − 46084 46156 73 Locate
trnL-UAA gene + 46787 47356 570 Locate
trnF-GAA gene + 47646 47718 73 Locate
ndhJ gene − 48341 48817 477 Locate
ndhK gene − 48928 49605 678 Locate
ndhC gene − 49657 50019 363 Locate
trnV-UAC gene − 50974 51623 650 Locate
trnM-CAU gene + 51804 51876 73 Locate
atpE gene − 52087 52488 402 Locate
atpB gene − 52485 53981 1497 Locate
rbcL gene + 54760 56214 1455 Locate
accD gene + 56852 58393 1542 Locate
psaI gene + 58857 58967 111 Locate
ycf4 gene + 59412 59966 555 Locate
cemA gene + 60620 61309 690 Locate
petA gene + 61524 62486 963 Locate
psbJ gene − 63534 63656 123 Locate
psbL gene − 63791 63907 117 Locate
psbF gene − 63931 64050 120 Locate
psbE gene − 64065 64316 252 Locate
petL gene + 65213 65308 96 Locate
petG gene + 65486 65599 114 Locate
trnW-CCA gene − 65714 65787 74 Locate
trnP-UGG gene − 65961 66034 74 Locate
psaJ gene + 66276 66467 192 Locate
rpl33 gene + 66903 67103 201 Locate
rps18 gene + 67276 67581 306 Locate
rpl20 gene − 67819 68205 387 Locate
rps12 gene − 69025 69138 114 Locate
clpP gene − 69262 71173 1912 Locate
psbB gene + 71622 73148 1527 Locate
psbT gene + 73331 73438 108 Locate
psbN gene − 73499 73630 132 Locate
psbH gene + 73718 73957 240 Locate
petB gene + 74083 75458 1376 Locate
petD gene + 75641 76828 1188 Locate
rpoA gene − 77005 78012 1008 Locate
rps11 gene − 78083 78499 417 Locate
rpl36 gene − 78609 78722 114 Locate
infA gene − 78818 79051 234 Locate
rps8 gene − 79172 79576 405 Locate
rpl14 gene − 79753 80121 369 Locate
rpl16 gene − 80254 81519 1266 Locate
rps3 gene − 81678 82340 663 Locate
rpl22 gene − 82325 82792 468 Locate
rps19 gene − 82862 83140 279 Locate
rpl2 gene − 83200 84689 1490 Locate
rpl23 gene − 84708 84989 282 Locate
trnI-CAU gene − 85155 85228 74 Locate
ycf2 gene + 85317 92156 6840 Locate
ycf15 gene + 92247 92495 249 Locate
trnL-CAA gene − 92756 92836 81 Locate
ndhB gene − 93397 95550 2154 Locate
rps7 gene − 95879 96346 468 Locate
rps12 gene − 96400 97180 781 Locate
trnV-GAC gene + 98821 98892 72 Locate
rrn16 gene + 99119 100609 1491 Locate
trnI-GAU gene + 100908 101926 1019 Locate
trnA-UGC gene + 101991 102868 878 Locate
rrn23 gene + 103034 105845 2812 Locate
rrn4.5 gene + 105946 106048 103 Locate
rrn5 gene + 106304 106424 121 Locate
trnR-ACG gene + 106668 106741 74 Locate
trnN-GUU gene − 107266 107337 72 Locate
ycf1 gene + 107556 108728 1173 Locate
ndhF gene − 108705 110918 2214 Locate
rpl32 gene + 111378 111548 171 Locate
trnL-UAG gene + 112298 112377 80 Locate
ccsA gene + 112471 113448 978 Locate
ndhD gene − 113672 115216 1545 Locate
psaC gene − 115312 115557 246 Locate
ndhE gene − 115808 116113 306 Locate
ndhG gene − 116326 116856 531 Locate
ndhI gene − 117239 117745 507 Locate
ndhA gene − 117826 119930 2105 Locate
ndhH gene − 119932 121167 1236 Locate
rps15 gene − 121213 121485 273 Locate
ycf1 gene − 121886 127543 5658 Locate
trnN-GUU gene + 127762 127833 72 Locate
trnR-ACG gene − 128358 128431 74 Locate
rrn5 gene − 128675 128795 121 Locate
rrn4.5 gene − 129051 129153 103 Locate
rrn23 gene − 129254 132065 2812 Locate
trnA-UGC gene − 132231 133108 878 Locate
trnI-GAU gene − 133173 134191 1019 Locate
rrn16 gene − 134490 135980 1491 Locate
trnV-GAC gene − 136207 136278 72 Locate
rps12 gene + 137919 138699 781 Locate
rps7 gene + 138753 139220 468 Locate
ndhB gene + 139549 141702 2154 Locate
trnL-CAA gene + 142263 142343 81 Locate
ycf15 gene − 142604 142852 249 Locate
ycf2 gene − 142943 149782 6840 Locate
trnI-CAU gene + 149871 149944 74 Locate
rpl23 gene + 150110 150391 282 Locate
rpl2 gene + 150410 151899 1490 Locate
rps19 gene + 151959 152001 43 Locate
Status Available
Accession NC_084051.1
Length 152,014 bp
GC content 38.1%
Annotated genes 134
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 27 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources