Matsumurella tuberifera chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · OR565964.1 · 2–76 bp · −
psbA · OR565964.1 · 316–1,374 bp · −
trnK-UUU · OR565964.1 · 1,607–4,196 bp · −
matK · OR565964.1 · 1,913–3,448 bp · −
rps16 · OR565964.1 · 5,019–6,160 bp · −
trnQ-UUG · OR565964.1 · 7,108–7,179 bp · −
trnS-GCU · OR565964.1 · 8,311–8,398 bp · −
atpA · OR565964.1 · 10,198–11,721 bp · −
atpF · OR565964.1 · 11,809–13,027 bp · −
atpH · OR565964.1 · 13,396–13,641 bp · −
atpI · OR565964.1 · 14,641–15,384 bp · −
rps2 · OR565964.1 · 15,615–16,325 bp · −
rpoC2 · OR565964.1 · 16,625–20,734 bp · −
rpoC1 · OR565964.1 · 20,889–23,720 bp · −
rpoB · OR565964.1 · 23,747–26,959 bp · −
psbM · OR565964.1 · 29,848–29,952 bp · −
trnD-GUC · OR565964.1 · 30,475–30,548 bp · −
trnY-GUA · OR565964.1 · 30,664–30,747 bp · −
trnE-UUC · OR565964.1 · 30,807–30,879 bp · −
trnS-UGA · OR565964.1 · 35,447–35,539 bp · −
trnfM-CAU · OR565964.1 · 36,503–36,576 bp · −
rps14 · OR565964.1 · 36,726–37,028 bp · −
psaB · OR565964.1 · 37,156–39,360 bp · −
psaA · OR565964.1 · 39,386–41,638 bp · −
ycf3 · OR565964.1 · 42,361–44,320 bp · −
rps4 · OR565964.1 · 45,034–45,639 bp · −
trnT-UGU · OR565964.1 · 46,032–46,104 bp · −
ndhJ · OR565964.1 · 48,378–48,872 bp · −
ndhK · OR565964.1 · 48,955–49,632 bp · −
ndhC · OR565964.1 · 49,686–50,048 bp · −
trnV-UAC · OR565964.1 · 51,000–51,647 bp · −
atpE · OR565964.1 · 52,126–52,527 bp · −
atpB · OR565964.1 · 52,524–54,014 bp · −
psbJ · OR565964.1 · 63,685–63,807 bp · −
psbL · OR565964.1 · 63,945–64,061 bp · −
psbF · OR565964.1 · 64,085–64,204 bp · −
psbE · OR565964.1 · 64,219–64,470 bp · −
trnW-CCA · OR565964.1 · 65,910–65,983 bp · −
trnP-UGG · OR565964.1 · 66,153–66,226 bp · −
rpl20 · OR565964.1 · 67,978–68,364 bp · −
rps12 · OR565964.1 · 69,132–69,245 bp · −
rps12 · OR565964.1 · 96,493–97,286 bp · −
clpP · OR565964.1 · 69,372–71,236 bp · −
psbN · OR565964.1 · 73,554–73,685 bp · −
rpoA · OR565964.1 · 77,109–78,122 bp · −
rps11 · OR565964.1 · 78,194–78,625 bp · −
rpl36 · OR565964.1 · 78,713–78,826 bp · −
infA · OR565964.1 · 78,922–79,155 bp · −
rps8 · OR565964.1 · 79,278–79,691 bp · −
rpl14 · OR565964.1 · 79,883–80,251 bp · −
rpl16 · OR565964.1 · 80,378–81,680 bp · −
rps3 · OR565964.1 · 81,827–82,489 bp · −
rpl22 · OR565964.1 · 82,474–82,938 bp · −
rps19 · OR565964.1 · 82,998–83,276 bp · −
rpl2 · OR565964.1 · 83,329–84,820 bp · −
rpl23 · OR565964.1 · 84,839–85,120 bp · −
trnI-CAU · OR565964.1 · 85,286–85,359 bp · −
trnL-CAA · OR565964.1 · 92,866–92,946 bp · −
ndhB · OR565964.1 · 93,486–95,697 bp · −
rps7 · OR565964.1 · 95,972–96,439 bp · −
trnN-GUU · OR565964.1 · 107,387–107,458 bp · −
ndhF · OR565964.1 · 108,848–111,070 bp · −
ndhD · OR565964.1 · 113,792–115,312 bp · −
psaC · OR565964.1 · 115,411–115,656 bp · −
ndhE · OR565964.1 · 115,919–116,224 bp · −
ndhG · OR565964.1 · 116,446–116,976 bp · −
ndhI · OR565964.1 · 117,349–117,855 bp · −
ndhA · OR565964.1 · 117,942–120,113 bp · −
ndhH · OR565964.1 · 120,115–121,296 bp · −
rps15 · OR565964.1 · 121,397–121,669 bp · −
ycf1 · OR565964.1 · 122,050–127,596 bp · −
trnR-ACG · OR565964.1 · 128,561–128,633 bp · −
rrn5 · OR565964.1 · 128,868–128,988 bp · −
rrn4.5 · OR565964.1 · 129,244–129,346 bp · −
rrn23 · OR565964.1 · 129,445–132,255 bp · −
trnA-UGC · OR565964.1 · 132,447–133,325 bp · −
trnI-GAU · OR565964.1 · 133,390–134,398 bp · −
rrn16 · OR565964.1 · 134,688–136,178 bp · −
trnV-GAC · OR565964.1 · 136,406–136,477 bp · −
ycf15 · OR565964.1 · 142,775–143,038 bp · −
ycf2 · OR565964.1 · 143,066–149,932 bp · −
psbK · OR565964.1 · 7,516–7,701 bp · +
psbI · OR565964.1 · 8,077–8,187 bp · +
trnG-UCC · OR565964.1 · 9,084–9,853 bp · +
trnR-UCU · OR565964.1 · 10,027–10,101 bp · +
trnC-GCA · OR565964.1 · 28,066–28,141 bp · +
petN · OR565964.1 · 28,978–29,067 bp · +
trnT-GGU · OR565964.1 · 31,465–31,535 bp · +
psbD · OR565964.1 · 32,786–33,847 bp · +
psbC · OR565964.1 · 33,795–35,216 bp · +
psbZ · OR565964.1 · 35,865–36,053 bp · +
trnG-GCC · OR565964.1 · 36,283–36,353 bp · +
trnS-GGA · OR565964.1 · 44,650–44,736 bp · +
trnL-UAA · OR565964.1 · 46,777–47,350 bp · +
trnF-GAA · OR565964.1 · 47,642–47,714 bp · +
trnM-CAU · OR565964.1 · 51,836–51,908 bp · +
rbcL · OR565964.1 · 54,802–56,268 bp · +
accD · OR565964.1 · 56,958–58,424 bp · +
psaI · OR565964.1 · 59,110–59,220 bp · +
ycf4 · OR565964.1 · 59,656–60,210 bp · +
cemA · OR565964.1 · 60,771–61,460 bp · +
petA · OR565964.1 · 61,677–62,639 bp · +
petL · OR565964.1 · 65,402–65,497 bp · +
petG · OR565964.1 · 65,671–65,784 bp · +
psaJ · OR565964.1 · 66,502–66,636 bp · +
rpl33 · OR565964.1 · 67,108–67,308 bp · +
rps18 · OR565964.1 · 67,456–67,761 bp · +
rps12 · OR565964.1 · 138,094–138,887 bp · +
psbB · OR565964.1 · 71,674–73,200 bp · +
psbT · OR565964.1 · 73,386–73,493 bp · +
psbH · OR565964.1 · 73,789–74,010 bp · +
petB · OR565964.1 · 74,135–75,516 bp · +
petD · OR565964.1 · 75,719–76,931 bp · +
ycf2 · OR565964.1 · 85,448–92,314 bp · +
ycf15 · OR565964.1 · 92,357–92,605 bp · +
trnV-GAC · OR565964.1 · 98,903–98,974 bp · +
rrn16 · OR565964.1 · 99,202–100,692 bp · +
trnI-GAU · OR565964.1 · 100,982–101,990 bp · +
trnA-UGC · OR565964.1 · 102,055–102,933 bp · +
rrn23 · OR565964.1 · 103,125–105,935 bp · +
rrn4.5 · OR565964.1 · 106,034–106,136 bp · +
rrn5 · OR565964.1 · 106,392–106,512 bp · +
trnR-ACG · OR565964.1 · 106,747–106,819 bp · +
rpl32 · OR565964.1 · 111,576–111,752 bp · +
trnL-UAG · OR565964.1 · 112,477–112,556 bp · +
ccsA · OR565964.1 · 112,641–113,612 bp · +
trnN-GUU · OR565964.1 · 127,922–127,993 bp · +
rps7 · OR565964.1 · 138,941–139,408 bp · +
ndhB · OR565964.1 · 139,683–141,894 bp · +
trnL-CAA · OR565964.1 · 142,434–142,514 bp · +
trnI-CAU · OR565964.1 · 150,021–150,094 bp · +
rpl23 · OR565964.1 · 150,260–150,541 bp · +
rpl2 · OR565964.1 · 150,560–152,051 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Matsumurella tuberifera
ANNOTATED PLASTOME
OR565964.1
152,145 bp · 132 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38036 76072 114109 152145 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
133 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 2 76 75 Locate
psbA gene − 316 1374 1059 Locate
trnK-UUU gene − 1607 4196 2590 Locate
matK gene − 1913 3448 1536 Locate
rps16 gene − 5019 6160 1142 Locate
trnQ-UUG gene − 7108 7179 72 Locate
psbK gene + 7516 7701 186 Locate
psbI gene + 8077 8187 111 Locate
trnS-GCU gene − 8311 8398 88 Locate
trnG-UCC gene + 9084 9853 770 Locate
trnR-UCU gene + 10027 10101 75 Locate
atpA gene − 10198 11721 1524 Locate
atpF gene − 11809 13027 1219 Locate
atpH gene − 13396 13641 246 Locate
atpI gene − 14641 15384 744 Locate
rps2 gene − 15615 16325 711 Locate
rpoC2 gene − 16625 20734 4110 Locate
rpoC1 gene − 20889 23720 2832 Locate
rpoB gene − 23747 26959 3213 Locate
trnC-GCA gene + 28066 28141 76 Locate
petN gene + 28978 29067 90 Locate
psbM gene − 29848 29952 105 Locate
trnD-GUC gene − 30475 30548 74 Locate
trnY-GUA gene − 30664 30747 84 Locate
trnE-UUC gene − 30807 30879 73 Locate
trnT-GGU gene + 31465 31535 71 Locate
psbD gene + 32786 33847 1062 Locate
psbC gene + 33795 35216 1422 Locate
trnS-UGA gene − 35447 35539 93 Locate
psbZ gene + 35865 36053 189 Locate
trnG-GCC gene + 36283 36353 71 Locate
trnfM-CAU gene − 36503 36576 74 Locate
rps14 gene − 36726 37028 303 Locate
psaB gene − 37156 39360 2205 Locate
psaA gene − 39386 41638 2253 Locate
ycf3 gene − 42361 44320 1960 Locate
trnS-GGA gene + 44650 44736 87 Locate
rps4 gene − 45034 45639 606 Locate
trnT-UGU gene − 46032 46104 73 Locate
trnL-UAA gene + 46777 47350 574 Locate
trnF-GAA gene + 47642 47714 73 Locate
ndhJ gene − 48378 48872 495 Locate
ndhK gene − 48955 49632 678 Locate
ndhC gene − 49686 50048 363 Locate
trnV-UAC gene − 51000 51647 648 Locate
trnM-CAU gene + 51836 51908 73 Locate
atpE gene − 52126 52527 402 Locate
atpB gene − 52524 54014 1491 Locate
rbcL gene + 54802 56268 1467 Locate
accD gene + 56958 58424 1467 Locate
psaI gene + 59110 59220 111 Locate
ycf4 gene + 59656 60210 555 Locate
cemA gene + 60771 61460 690 Locate
petA gene + 61677 62639 963 Locate
psbJ gene − 63685 63807 123 Locate
psbL gene − 63945 64061 117 Locate
psbF gene − 64085 64204 120 Locate
psbE gene − 64219 64470 252 Locate
petL gene + 65402 65497 96 Locate
petG gene + 65671 65784 114 Locate
trnW-CCA gene − 65910 65983 74 Locate
trnP-UGG gene − 66153 66226 74 Locate
psaJ gene + 66502 66636 135 Locate
rpl33 gene + 67108 67308 201 Locate
rps18 gene + 67456 67761 306 Locate
rpl20 gene − 67978 68364 387 Locate
rps12 gene − 69132 69245 114 Locate
clpP gene − 69372 71236 1865 Locate
psbB gene + 71674 73200 1527 Locate
psbT gene + 73386 73493 108 Locate
psbN gene − 73554 73685 132 Locate
psbH gene + 73789 74010 222 Locate
petB gene + 74135 75516 1382 Locate
petD gene + 75719 76931 1213 Locate
rpoA gene − 77109 78122 1014 Locate
rps11 gene − 78194 78625 432 Locate
rpl36 gene − 78713 78826 114 Locate
infA gene − 78922 79155 234 Locate
rps8 gene − 79278 79691 414 Locate
rpl14 gene − 79883 80251 369 Locate
rpl16 gene − 80378 81680 1303 Locate
rps3 gene − 81827 82489 663 Locate
rpl22 gene − 82474 82938 465 Locate
rps19 gene − 82998 83276 279 Locate
rpl2 gene − 83329 84820 1492 Locate
rpl23 gene − 84839 85120 282 Locate
trnI-CAU gene − 85286 85359 74 Locate
ycf2 gene + 85448 92314 6867 Locate
ycf15 gene + 92357 92605 249 Locate
trnL-CAA gene − 92866 92946 81 Locate
ndhB gene − 93486 95697 2212 Locate
rps7 gene − 95972 96439 468 Locate
rps12 gene − 96493 97286 794 Locate
trnV-GAC gene + 98903 98974 72 Locate
rrn16 gene + 99202 100692 1491 Locate
trnI-GAU gene + 100982 101990 1009 Locate
trnA-UGC gene + 102055 102933 879 Locate
rrn23 gene + 103125 105935 2811 Locate
rrn4.5 gene + 106034 106136 103 Locate
rrn5 gene + 106392 106512 121 Locate
trnR-ACG gene + 106747 106819 73 Locate
trnN-GUU gene − 107387 107458 72 Locate
ndhF gene − 108848 111070 2223 Locate
rpl32 gene + 111576 111752 177 Locate
trnL-UAG gene + 112477 112556 80 Locate
ccsA gene + 112641 113612 972 Locate
ndhD gene − 113792 115312 1521 Locate
psaC gene − 115411 115656 246 Locate
ndhE gene − 115919 116224 306 Locate
ndhG gene − 116446 116976 531 Locate
ndhI gene − 117349 117855 507 Locate
ndhA gene − 117942 120113 2172 Locate
ndhH gene − 120115 121296 1182 Locate
rps15 gene − 121397 121669 273 Locate
ycf1 gene − 122050 127596 5547 Locate
trnN-GUU gene + 127922 127993 72 Locate
trnR-ACG gene − 128561 128633 73 Locate
rrn5 gene − 128868 128988 121 Locate
rrn4.5 gene − 129244 129346 103 Locate
rrn23 gene − 129445 132255 2811 Locate
trnA-UGC gene − 132447 133325 879 Locate
trnI-GAU gene − 133390 134398 1009 Locate
rrn16 gene − 134688 136178 1491 Locate
trnV-GAC gene − 136406 136477 72 Locate
rps12 gene + 138094 138887 794 Locate
rps7 gene + 138941 139408 468 Locate
ndhB gene + 139683 141894 2212 Locate
trnL-CAA gene + 142434 142514 81 Locate
ycf15 gene − 142775 143038 264 Locate
ycf2 gene − 143066 149932 6867 Locate
trnI-CAU gene + 150021 150094 74 Locate
rpl23 gene + 150260 150541 282 Locate
rpl2 gene + 150560 152051 1492 Locate
Status Available
Accession OR565964.1
Length 152,145 bp
GC content 38.4%
Annotated genes 132
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 14 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources