Nepeta santoana chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · PV837617.1 · 11–85 bp · −
psbA · PV837617.1 · 451–1,509 bp · −
trnK-UUU · PV837617.1 · 1,741–4,307 bp · −
matK · PV837617.1 · 2,024–3,571 bp · −
rps16 · PV837617.1 · 4,839–5,842 bp · −
trnQ-UUG · PV837617.1 · 6,862–6,933 bp · −
trnS-GCU · PV837617.1 · 8,182–8,269 bp · −
atpA · PV837617.1 · 10,114–11,637 bp · −
atpF · PV837617.1 · 11,731–12,976 bp · −
atpH · PV837617.1 · 13,243–13,488 bp · −
atpI · PV837617.1 · 14,400–15,143 bp · −
rps2 · PV837617.1 · 15,374–16,084 bp · −
rpoC2 · PV837617.1 · 16,291–20,478 bp · −
rpoC1 · PV837617.1 · 20,639–23,456 bp · −
rpoB · PV837617.1 · 23,483–26,695 bp · −
psbM · PV837617.1 · 29,105–29,209 bp · −
trnD-GUC · PV837617.1 · 29,731–29,804 bp · −
trnY-GUA · PV837617.1 · 29,915–29,998 bp · −
trnE-UUC · PV837617.1 · 30,076–30,148 bp · −
trnS-UGA · PV837617.1 · 34,850–34,941 bp · −
trnfM-CAU · PV837617.1 · 36,011–36,084 bp · −
rps14 · PV837617.1 · 36,234–36,536 bp · −
psaB · PV837617.1 · 36,659–38,863 bp · −
psaA · PV837617.1 · 38,889–41,141 bp · −
ycf3 · PV837617.1 · 41,989–43,935 bp · −
rps4 · PV837617.1 · 45,168–45,773 bp · −
trnT-UGU · PV837617.1 · 46,167–46,239 bp · −
ndhJ · PV837617.1 · 48,484–48,960 bp · −
ndhK · PV837617.1 · 49,071–49,748 bp · −
ndhC · PV837617.1 · 49,800–50,162 bp · −
trnV-UAC · PV837617.1 · 51,089–51,746 bp · −
atpE · PV837617.1 · 52,205–52,606 bp · −
atpB · PV837617.1 · 52,603–54,099 bp · −
psbJ · PV837617.1 · 63,538–63,660 bp · −
psbL · PV837617.1 · 63,790–63,906 bp · −
psbF · PV837617.1 · 63,930–64,049 bp · −
psbE · PV837617.1 · 64,064–64,315 bp · −
trnW-CCA · PV837617.1 · 65,711–65,784 bp · −
trnP-UGG · PV837617.1 · 65,958–66,031 bp · −
rpl20 · PV837617.1 · 67,812–68,198 bp · −
rps12 · PV837617.1 · 68,988–69,113 bp · −
rps12 · PV837617.1 · 96,272–97,065 bp · −
clpP · PV837617.1 · 69,226–71,126 bp · −
psbN · PV837617.1 · 73,446–73,577 bp · −
rpoA · PV837617.1 · 76,931–77,938 bp · −
rps11 · PV837617.1 · 78,010–78,426 bp · −
rpl36 · PV837617.1 · 78,544–78,657 bp · −
infA · PV837617.1 · 78,753–78,986 bp · −
rps8 · PV837617.1 · 79,114–79,518 bp · −
rpl14 · PV837617.1 · 79,708–80,076 bp · −
rpl16 · PV837617.1 · 80,215–81,507 bp · −
rps3 · PV837617.1 · 81,604–82,266 bp · −
rpl22 · PV837617.1 · 82,251–82,718 bp · −
rps19 · PV837617.1 · 82,788–83,066 bp · −
rpl2 · PV837617.1 · 83,126–84,615 bp · −
rpl23 · PV837617.1 · 84,634–84,915 bp · −
trnI-CAU · PV837617.1 · 85,081–85,154 bp · −
trnL-CAA · PV837617.1 · 92,641–92,721 bp · −
ndhB · PV837617.1 · 93,278–95,485 bp · −
rps7 · PV837617.1 · 95,751–96,218 bp · −
trnN-GUU · PV837617.1 · 107,159–107,230 bp · −
ndhF · PV837617.1 · 108,584–110,815 bp · −
ndhD · PV837617.1 · 113,546–115,078 bp · −
psaC · PV837617.1 · 115,170–115,415 bp · −
ndhE · PV837617.1 · 115,673–115,978 bp · −
ndhG · PV837617.1 · 116,196–116,726 bp · −
ndhI · PV837617.1 · 117,094–117,600 bp · −
ndhA · PV837617.1 · 117,681–119,804 bp · −
ndhH · PV837617.1 · 119,806–120,993 bp · −
rps15 · PV837617.1 · 121,092–121,364 bp · −
ycf1 · PV837617.1 · 121,734–127,286 bp · −
trnR-ACG · PV837617.1 · 128,208–128,281 bp · −
rrn5 · PV837617.1 · 128,525–128,645 bp · −
rrn4.5 · PV837617.1 · 128,906–129,008 bp · −
rrn23 · PV837617.1 · 129,107–131,917 bp · −
trnA-UGC · PV837617.1 · 132,075–132,952 bp · −
trnI-GAU · PV837617.1 · 133,022–134,040 bp · −
rrn16 · PV837617.1 · 134,339–135,829 bp · −
trnV-GAC · PV837617.1 · 136,056–136,127 bp · −
ycf15 · PV837617.1 · 142,461–142,658 bp · −
ycf2 · PV837617.1 · 142,800–149,603 bp · −
psbK · PV837617.1 · 7,330–7,515 bp · +
psbI · PV837617.1 · 7,899–8,009 bp · +
trnG-UCC · PV837617.1 · 9,002–9,761 bp · +
trnR-UCU · PV837617.1 · 9,943–10,014 bp · +
trnC-GCA · PV837617.1 · 27,852–27,922 bp · +
petN · PV837617.1 · 28,088–28,177 bp · +
trnT-GGU · PV837617.1 · 30,711–30,782 bp · +
psbD · PV837617.1 · 32,176–33,237 bp · +
psbC · PV837617.1 · 33,185–34,606 bp · +
psbZ · PV837617.1 · 35,292–35,480 bp · +
trnG-GCC · PV837617.1 · 35,776–35,846 bp · +
trnS-GGA · PV837617.1 · 44,801–44,887 bp · +
trnL-UAA · PV837617.1 · 46,948–47,476 bp · +
trnF-GAA · PV837617.1 · 47,766–47,838 bp · +
trnM-CAU · PV837617.1 · 51,927–51,999 bp · +
rbcL · PV837617.1 · 54,890–56,323 bp · +
accD · PV837617.1 · 56,999–58,480 bp · +
psaI · PV837617.1 · 58,956–59,066 bp · +
ycf4 · PV837617.1 · 59,521–60,075 bp · +
cemA · PV837617.1 · 60,750–61,439 bp · +
petA · PV837617.1 · 61,647–62,609 bp · +
petL · PV837617.1 · 65,209–65,304 bp · +
petG · PV837617.1 · 65,482–65,595 bp · +
psaJ · PV837617.1 · 66,329–66,463 bp · +
rpl33 · PV837617.1 · 66,904–67,104 bp · +
rps18 · PV837617.1 · 67,291–67,596 bp · +
psbB · PV837617.1 · 71,557–73,083 bp · +
psbT · PV837617.1 · 73,269–73,385 bp · +
psbH · PV837617.1 · 73,683–73,904 bp · +
petB · PV837617.1 · 74,026–75,376 bp · +
petD · PV837617.1 · 75,564–76,748 bp · +
ycf2 · PV837617.1 · 85,243–92,046 bp · +
ycf15 · PV837617.1 · 92,188–92,385 bp · +
trnV-GAC · PV837617.1 · 98,719–98,790 bp · +
rrn16 · PV837617.1 · 99,017–100,507 bp · +
trnI-GAU · PV837617.1 · 100,806–101,824 bp · +
trnA-UGC · PV837617.1 · 101,894–102,771 bp · +
rrn23 · PV837617.1 · 102,929–105,739 bp · +
rrn4.5 · PV837617.1 · 105,838–105,940 bp · +
rrn5 · PV837617.1 · 106,201–106,321 bp · +
trnR-ACG · PV837617.1 · 106,565–106,638 bp · +
ycf1 · PV837617.1 · 107,560–108,630 bp · +
rpl32 · PV837617.1 · 111,276–111,446 bp · +
trnL-UAG · PV837617.1 · 112,143–112,222 bp · +
ccsA · PV837617.1 · 112,317–113,294 bp · +
trnN-GUU · PV837617.1 · 127,616–127,687 bp · +
rps7 · PV837617.1 · 138,628–139,095 bp · +
ndhB · PV837617.1 · 139,361–141,568 bp · +
trnL-CAA · PV837617.1 · 142,125–142,205 bp · +
trnI-CAU · PV837617.1 · 149,692–149,765 bp · +
rpl23 · PV837617.1 · 149,931–150,212 bp · +
rpl2 · PV837617.1 · 150,231–151,720 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Nepeta santoana
ANNOTATED PLASTOME
PV837617.1
151,822 bp · 132 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37956 75911 113866 151822 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG ycf1 rpl32 trnL-UAG ccsA trnN-GUU rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
133 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 11 85 75 Locate
psbA gene − 451 1509 1059 Locate
trnK-UUU gene − 1741 4307 2567 Locate
matK gene − 2024 3571 1548 Locate
rps16 gene − 4839 5842 1004 Locate
trnQ-UUG gene − 6862 6933 72 Locate
psbK gene + 7330 7515 186 Locate
psbI gene + 7899 8009 111 Locate
trnS-GCU gene − 8182 8269 88 Locate
trnG-UCC gene + 9002 9761 760 Locate
trnR-UCU gene + 9943 10014 72 Locate
atpA gene − 10114 11637 1524 Locate
atpF gene − 11731 12976 1246 Locate
atpH gene − 13243 13488 246 Locate
atpI gene − 14400 15143 744 Locate
rps2 gene − 15374 16084 711 Locate
rpoC2 gene − 16291 20478 4188 Locate
rpoC1 gene − 20639 23456 2818 Locate
rpoB gene − 23483 26695 3213 Locate
trnC-GCA gene + 27852 27922 71 Locate
petN gene + 28088 28177 90 Locate
psbM gene − 29105 29209 105 Locate
trnD-GUC gene − 29731 29804 74 Locate
trnY-GUA gene − 29915 29998 84 Locate
trnE-UUC gene − 30076 30148 73 Locate
trnT-GGU gene + 30711 30782 72 Locate
psbD gene + 32176 33237 1062 Locate
psbC gene + 33185 34606 1422 Locate
trnS-UGA gene − 34850 34941 92 Locate
psbZ gene + 35292 35480 189 Locate
trnG-GCC gene + 35776 35846 71 Locate
trnfM-CAU gene − 36011 36084 74 Locate
rps14 gene − 36234 36536 303 Locate
psaB gene − 36659 38863 2205 Locate
psaA gene − 38889 41141 2253 Locate
ycf3 gene − 41989 43935 1947 Locate
trnS-GGA gene + 44801 44887 87 Locate
rps4 gene − 45168 45773 606 Locate
trnT-UGU gene − 46167 46239 73 Locate
trnL-UAA gene + 46948 47476 529 Locate
trnF-GAA gene + 47766 47838 73 Locate
ndhJ gene − 48484 48960 477 Locate
ndhK gene − 49071 49748 678 Locate
ndhC gene − 49800 50162 363 Locate
trnV-UAC gene − 51089 51746 658 Locate
trnM-CAU gene + 51927 51999 73 Locate
atpE gene − 52205 52606 402 Locate
atpB gene − 52603 54099 1497 Locate
rbcL gene + 54890 56323 1434 Locate
accD gene + 56999 58480 1482 Locate
psaI gene + 58956 59066 111 Locate
ycf4 gene + 59521 60075 555 Locate
cemA gene + 60750 61439 690 Locate
petA gene + 61647 62609 963 Locate
psbJ gene − 63538 63660 123 Locate
psbL gene − 63790 63906 117 Locate
psbF gene − 63930 64049 120 Locate
psbE gene − 64064 64315 252 Locate
petL gene + 65209 65304 96 Locate
petG gene + 65482 65595 114 Locate
trnW-CCA gene − 65711 65784 74 Locate
trnP-UGG gene − 65958 66031 74 Locate
psaJ gene + 66329 66463 135 Locate
rpl33 gene + 66904 67104 201 Locate
rps18 gene + 67291 67596 306 Locate
rpl20 gene − 67812 68198 387 Locate
rps12 gene − 68988 69113 126 Locate
clpP gene − 69226 71126 1901 Locate
psbB gene + 71557 73083 1527 Locate
psbT gene + 73269 73385 117 Locate
psbN gene − 73446 73577 132 Locate
psbH gene + 73683 73904 222 Locate
petB gene + 74026 75376 1351 Locate
petD gene + 75564 76748 1185 Locate
rpoA gene − 76931 77938 1008 Locate
rps11 gene − 78010 78426 417 Locate
rpl36 gene − 78544 78657 114 Locate
infA gene − 78753 78986 234 Locate
rps8 gene − 79114 79518 405 Locate
rpl14 gene − 79708 80076 369 Locate
rpl16 gene − 80215 81507 1293 Locate
rps3 gene − 81604 82266 663 Locate
rpl22 gene − 82251 82718 468 Locate
rps19 gene − 82788 83066 279 Locate
rpl2 gene − 83126 84615 1490 Locate
rpl23 gene − 84634 84915 282 Locate
trnI-CAU gene − 85081 85154 74 Locate
ycf2 gene + 85243 92046 6804 Locate
ycf15 gene + 92188 92385 198 Locate
trnL-CAA gene − 92641 92721 81 Locate
ndhB gene − 93278 95485 2208 Locate
rps7 gene − 95751 96218 468 Locate
rps12 gene − 96272 97065 794 Locate
trnV-GAC gene + 98719 98790 72 Locate
rrn16 gene + 99017 100507 1491 Locate
trnI-GAU gene + 100806 101824 1019 Locate
trnA-UGC gene + 101894 102771 878 Locate
rrn23 gene + 102929 105739 2811 Locate
rrn4.5 gene + 105838 105940 103 Locate
rrn5 gene + 106201 106321 121 Locate
trnR-ACG gene + 106565 106638 74 Locate
trnN-GUU gene − 107159 107230 72 Locate
ycf1 gene + 107560 108630 1071 Locate
ndhF gene − 108584 110815 2232 Locate
rpl32 gene + 111276 111446 171 Locate
trnL-UAG gene + 112143 112222 80 Locate
ccsA gene + 112317 113294 978 Locate
ndhD gene − 113546 115078 1533 Locate
psaC gene − 115170 115415 246 Locate
ndhE gene − 115673 115978 306 Locate
ndhG gene − 116196 116726 531 Locate
ndhI gene − 117094 117600 507 Locate
ndhA gene − 117681 119804 2124 Locate
ndhH gene − 119806 120993 1188 Locate
rps15 gene − 121092 121364 273 Locate
ycf1 gene − 121734 127286 5553 Locate
trnN-GUU gene + 127616 127687 72 Locate
trnR-ACG gene − 128208 128281 74 Locate
rrn5 gene − 128525 128645 121 Locate
rrn4.5 gene − 128906 129008 103 Locate
rrn23 gene − 129107 131917 2811 Locate
trnA-UGC gene − 132075 132952 878 Locate
trnI-GAU gene − 133022 134040 1019 Locate
rrn16 gene − 134339 135829 1491 Locate
trnV-GAC gene − 136056 136127 72 Locate
rps7 gene + 138628 139095 468 Locate
ndhB gene + 139361 141568 2208 Locate
trnL-CAA gene + 142125 142205 81 Locate
ycf15 gene − 142461 142658 198 Locate
ycf2 gene − 142800 149603 6804 Locate
trnI-CAU gene + 149692 149765 74 Locate
rpl23 gene + 149931 150212 282 Locate
rpl2 gene + 150231 151720 1490 Locate
Status Available
Accession PV837617.1
Length 151,822 bp
GC content 37.8%
Annotated genes 132
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 25 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources