Nepeta thomsonii chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
trnH-GUG · NC_071850.1 · 11–85 bp · −
psbA · NC_071850.1 · 405–1,463 bp · −
trnK-UUU · NC_071850.1 · 1,695–4,264 bp · −
matK · NC_071850.1 · 1,981–3,528 bp · −
rps16 · NC_071850.1 · 4,784–5,924 bp · −
trnQ-UUG · NC_071850.1 · 6,960–7,031 bp · −
trnS-GCU · NC_071850.1 · 8,265–8,352 bp · −
atpA · NC_071850.1 · 10,182–11,705 bp · −
atpF · NC_071850.1 · 11,803–13,048 bp · −
atpH · NC_071850.1 · 13,313–13,558 bp · −
atpI · NC_071850.1 · 14,490–15,233 bp · −
rps2 · NC_071850.1 · 15,456–16,166 bp · −
rpoC2 · NC_071850.1 · 16,373–20,560 bp · −
rpoC1 · NC_071850.1 · 20,722–23,571 bp · −
rpoB · NC_071850.1 · 23,577–26,789 bp · −
psbM · NC_071850.1 · 29,232–29,336 bp · −
trnD-GUC · NC_071850.1 · 29,858–29,931 bp · −
trnY-GUA · NC_071850.1 · 30,047–30,130 bp · −
trnE-UUC · NC_071850.1 · 30,208–30,280 bp · −
trnS-UGA · NC_071850.1 · 34,969–35,061 bp · −
trnfM-CAU · NC_071850.1 · 36,128–36,201 bp · −
rps14 · NC_071850.1 · 36,351–36,653 bp · −
psaB · NC_071850.1 · 36,776–38,980 bp · −
psaA · NC_071850.1 · 39,006–41,258 bp · −
ycf3 · NC_071850.1 · 42,082–44,029 bp · −
rps4 · NC_071850.1 · 45,252–45,857 bp · −
trnT-UGU · NC_071850.1 · 46,291–46,363 bp · −
ndhJ · NC_071850.1 · 48,633–49,109 bp · −
ndhK · NC_071850.1 · 49,219–49,896 bp · −
ndhC · NC_071850.1 · 49,948–50,310 bp · −
trnV-UAC · NC_071850.1 · 51,255–51,912 bp · −
atpE · NC_071850.1 · 52,371–52,772 bp · −
atpB · NC_071850.1 · 52,769–54,265 bp · −
psbJ · NC_071850.1 · 63,801–63,923 bp · −
psbL · NC_071850.1 · 64,053–64,169 bp · −
psbF · NC_071850.1 · 64,193–64,312 bp · −
psbE · NC_071850.1 · 64,327–64,578 bp · −
trnW-CCA · NC_071850.1 · 65,964–66,037 bp · −
trnP-UGG · NC_071850.1 · 66,211–66,284 bp · −
rpl20 · NC_071850.1 · 68,048–68,434 bp · −
rps12 · NC_071850.1 · 69,224–69,349 bp · −
rps12 · NC_071850.1 · 96,591–97,384 bp · −
clpP · NC_071850.1 · 69,472–71,385 bp · −
psbN · NC_071850.1 · 73,692–73,823 bp · −
rpoA · NC_071850.1 · 77,207–78,214 bp · −
rps11 · NC_071850.1 · 78,285–78,701 bp · −
rpl36 · NC_071850.1 · 78,811–78,924 bp · −
infA · NC_071850.1 · 79,020–79,253 bp · −
rps8 · NC_071850.1 · 79,381–79,785 bp · −
rpl14 · NC_071850.1 · 79,969–80,337 bp · −
rpl16 · NC_071850.1 · 80,476–81,733 bp · −
rps3 · NC_071850.1 · 81,883–82,545 bp · −
rpl22 · NC_071850.1 · 82,530–82,997 bp · −
rps19 · NC_071850.1 · 83,067–83,345 bp · −
rpl2 · NC_071850.1 · 83,406–84,895 bp · −
rpl23 · NC_071850.1 · 84,914–85,195 bp · −
trnI-CAU · NC_071850.1 · 85,361–85,434 bp · −
trnL-CAA · NC_071850.1 · 92,945–93,025 bp · −
ndhB · NC_071850.1 · 93,597–95,804 bp · −
rps7 · NC_071850.1 · 96,070–96,537 bp · −
trnN-GUU · NC_071850.1 · 107,501–107,572 bp · −
ndhF · NC_071850.1 · 108,926–111,157 bp · −
ndhD · NC_071850.1 · 113,873–115,402 bp · −
psaC · NC_071850.1 · 115,494–115,739 bp · −
ndhE · NC_071850.1 · 116,003–116,308 bp · −
ndhG · NC_071850.1 · 116,535–117,065 bp · −
ndhI · NC_071850.1 · 117,430–117,936 bp · −
ndhA · NC_071850.1 · 118,017–120,128 bp · −
ndhH · NC_071850.1 · 120,130–121,317 bp · −
rps15 · NC_071850.1 · 121,417–121,689 bp · −
ycf1 · NC_071850.1 · 122,059–127,611 bp · −
trnR-ACG · NC_071850.1 · 128,539–128,612 bp · −
rrn5 · NC_071850.1 · 128,856–128,976 bp · −
rrn4.5 · NC_071850.1 · 129,237–129,339 bp · −
rrn23 · NC_071850.1 · 129,438–132,248 bp · −
trnA-UGC · NC_071850.1 · 132,414–133,295 bp · −
trnI-GAU · NC_071850.1 · 133,365–134,384 bp · −
rrn16 · NC_071850.1 · 134,683–136,173 bp · −
trnV-GAC · NC_071850.1 · 136,394–136,465 bp · −
ycf15 · NC_071850.1 · 142,824–143,072 bp · −
ycf2 · NC_071850.1 · 143,163–149,990 bp · −
psbK · NC_071850.1 · 7,428–7,613 bp · +
psbI · NC_071850.1 · 7,997–8,107 bp · +
trnG-UCC · NC_071850.1 · 9,075–9,829 bp · +
trnR-UCU · NC_071850.1 · 10,011–10,082 bp · +
trnC-GCA · NC_071850.1 · 27,966–28,036 bp · +
petN · NC_071850.1 · 28,197–28,286 bp · +
trnT-GGU · NC_071850.1 · 30,834–30,905 bp · +
psbD · NC_071850.1 · 32,286–33,347 bp · +
psbC · NC_071850.1 · 33,295–34,716 bp · +
psbZ · NC_071850.1 · 35,406–35,594 bp · +
trnG-GCC · NC_071850.1 · 35,890–35,960 bp · +
trnS-GGA · NC_071850.1 · 44,883–44,969 bp · +
trnL-UAA · NC_071850.1 · 47,066–47,614 bp · +
trnF-GAA · NC_071850.1 · 47,908–47,980 bp · +
trnM-CAU · NC_071850.1 · 52,093–52,165 bp · +
rbcL · NC_071850.1 · 55,060–56,493 bp · +
accD · NC_071850.1 · 57,176–58,657 bp · +
psaI · NC_071850.1 · 59,150–59,260 bp · +
ycf4 · NC_071850.1 · 59,715–60,269 bp · +
cemA · NC_071850.1 · 60,929–61,618 bp · +
petA · NC_071850.1 · 61,828–62,790 bp · +
petL · NC_071850.1 · 65,466–65,561 bp · +
petG · NC_071850.1 · 65,740–65,853 bp · +
psaJ · NC_071850.1 · 66,564–66,698 bp · +
rpl33 · NC_071850.1 · 67,145–67,345 bp · +
rps18 · NC_071850.1 · 67,528–67,833 bp · +
rps12 · NC_071850.1 · 138,129–138,922 bp · +
psbB · NC_071850.1 · 71,815–73,341 bp · +
psbT · NC_071850.1 · 73,524–73,631 bp · +
psbH · NC_071850.1 · 73,929–74,150 bp · +
petB · NC_071850.1 · 74,272–75,643 bp · +
petD · NC_071850.1 · 75,831–77,015 bp · +
ycf2 · NC_071850.1 · 85,523–92,350 bp · +
ycf15 · NC_071850.1 · 92,441–92,689 bp · +
trnV-GAC · NC_071850.1 · 99,048–99,119 bp · +
rrn16 · NC_071850.1 · 99,340–100,830 bp · +
trnI-GAU · NC_071850.1 · 101,129–102,148 bp · +
trnA-UGC · NC_071850.1 · 102,218–103,099 bp · +
rrn23 · NC_071850.1 · 103,265–106,075 bp · +
rrn4.5 · NC_071850.1 · 106,174–106,276 bp · +
rrn5 · NC_071850.1 · 106,537–106,657 bp · +
trnR-ACG · NC_071850.1 · 106,901–106,974 bp · +
ycf1 · NC_071850.1 · 107,902–108,972 bp · +
rpl32 · NC_071850.1 · 111,619–111,789 bp · +
trnL-UAG · NC_071850.1 · 112,463–112,542 bp · +
ccsA · NC_071850.1 · 112,637–113,614 bp · +
trnN-GUU · NC_071850.1 · 127,941–128,012 bp · +
rps7 · NC_071850.1 · 138,976–139,443 bp · +
ndhB · NC_071850.1 · 139,709–141,916 bp · +
trnL-CAA · NC_071850.1 · 142,488–142,568 bp · +
trnI-CAU · NC_071850.1 · 150,079–150,152 bp · +
rpl23 · NC_071850.1 · 150,318–150,599 bp · +
rpl2 · NC_071850.1 · 150,618–152,107 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Nepeta thomsonii
ANNOTATED PLASTOME
NC_071850.1
152,210 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38052 76105 114158 152210 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG ycf1 rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 11 85 75 Locate
psbA gene − 405 1463 1059 Locate
trnK-UUU gene − 1695 4264 2570 Locate
matK gene − 1981 3528 1548 Locate
rps16 gene − 4784 5924 1141 Locate
trnQ-UUG gene − 6960 7031 72 Locate
psbK gene + 7428 7613 186 Locate
psbI gene + 7997 8107 111 Locate
trnS-GCU gene − 8265 8352 88 Locate
trnG-UCC gene + 9075 9829 755 Locate
trnR-UCU gene + 10011 10082 72 Locate
atpA gene − 10182 11705 1524 Locate
atpF gene − 11803 13048 1246 Locate
atpH gene − 13313 13558 246 Locate
atpI gene − 14490 15233 744 Locate
rps2 gene − 15456 16166 711 Locate
rpoC2 gene − 16373 20560 4188 Locate
rpoC1 gene − 20722 23571 2850 Locate
rpoB gene − 23577 26789 3213 Locate
trnC-GCA gene + 27966 28036 71 Locate
petN gene + 28197 28286 90 Locate
psbM gene − 29232 29336 105 Locate
trnD-GUC gene − 29858 29931 74 Locate
trnY-GUA gene − 30047 30130 84 Locate
trnE-UUC gene − 30208 30280 73 Locate
trnT-GGU gene + 30834 30905 72 Locate
psbD gene + 32286 33347 1062 Locate
psbC gene + 33295 34716 1422 Locate
trnS-UGA gene − 34969 35061 93 Locate
psbZ gene + 35406 35594 189 Locate
trnG-GCC gene + 35890 35960 71 Locate
trnfM-CAU gene − 36128 36201 74 Locate
rps14 gene − 36351 36653 303 Locate
psaB gene − 36776 38980 2205 Locate
psaA gene − 39006 41258 2253 Locate
ycf3 gene − 42082 44029 1948 Locate
trnS-GGA gene + 44883 44969 87 Locate
rps4 gene − 45252 45857 606 Locate
trnT-UGU gene − 46291 46363 73 Locate
trnL-UAA gene + 47066 47614 549 Locate
trnF-GAA gene + 47908 47980 73 Locate
ndhJ gene − 48633 49109 477 Locate
ndhK gene − 49219 49896 678 Locate
ndhC gene − 49948 50310 363 Locate
trnV-UAC gene − 51255 51912 658 Locate
trnM-CAU gene + 52093 52165 73 Locate
atpE gene − 52371 52772 402 Locate
atpB gene − 52769 54265 1497 Locate
rbcL gene + 55060 56493 1434 Locate
accD gene + 57176 58657 1482 Locate
psaI gene + 59150 59260 111 Locate
ycf4 gene + 59715 60269 555 Locate
cemA gene + 60929 61618 690 Locate
petA gene + 61828 62790 963 Locate
psbJ gene − 63801 63923 123 Locate
psbL gene − 64053 64169 117 Locate
psbF gene − 64193 64312 120 Locate
psbE gene − 64327 64578 252 Locate
petL gene + 65466 65561 96 Locate
petG gene + 65740 65853 114 Locate
trnW-CCA gene − 65964 66037 74 Locate
trnP-UGG gene − 66211 66284 74 Locate
psaJ gene + 66564 66698 135 Locate
rpl33 gene + 67145 67345 201 Locate
rps18 gene + 67528 67833 306 Locate
rpl20 gene − 68048 68434 387 Locate
rps12 gene − 69224 69349 126 Locate
clpP gene − 69472 71385 1914 Locate
psbB gene + 71815 73341 1527 Locate
psbT gene + 73524 73631 108 Locate
psbN gene − 73692 73823 132 Locate
psbH gene + 73929 74150 222 Locate
petB gene + 74272 75643 1372 Locate
petD gene + 75831 77015 1185 Locate
rpoA gene − 77207 78214 1008 Locate
rps11 gene − 78285 78701 417 Locate
rpl36 gene − 78811 78924 114 Locate
infA gene − 79020 79253 234 Locate
rps8 gene − 79381 79785 405 Locate
rpl14 gene − 79969 80337 369 Locate
rpl16 gene − 80476 81733 1258 Locate
rps3 gene − 81883 82545 663 Locate
rpl22 gene − 82530 82997 468 Locate
rps19 gene − 83067 83345 279 Locate
rpl2 gene − 83406 84895 1490 Locate
rpl23 gene − 84914 85195 282 Locate
trnI-CAU gene − 85361 85434 74 Locate
ycf2 gene + 85523 92350 6828 Locate
ycf15 gene + 92441 92689 249 Locate
trnL-CAA gene − 92945 93025 81 Locate
ndhB gene − 93597 95804 2208 Locate
rps7 gene − 96070 96537 468 Locate
rps12 gene − 96591 97384 794 Locate
trnV-GAC gene + 99048 99119 72 Locate
rrn16 gene + 99340 100830 1491 Locate
trnI-GAU gene + 101129 102148 1020 Locate
trnA-UGC gene + 102218 103099 882 Locate
rrn23 gene + 103265 106075 2811 Locate
rrn4.5 gene + 106174 106276 103 Locate
rrn5 gene + 106537 106657 121 Locate
trnR-ACG gene + 106901 106974 74 Locate
trnN-GUU gene − 107501 107572 72 Locate
ycf1 gene + 107902 108972 1071 Locate
ndhF gene − 108926 111157 2232 Locate
rpl32 gene + 111619 111789 171 Locate
trnL-UAG gene + 112463 112542 80 Locate
ccsA gene + 112637 113614 978 Locate
ndhD gene − 113873 115402 1530 Locate
psaC gene − 115494 115739 246 Locate
ndhE gene − 116003 116308 306 Locate
ndhG gene − 116535 117065 531 Locate
ndhI gene − 117430 117936 507 Locate
ndhA gene − 118017 120128 2112 Locate
ndhH gene − 120130 121317 1188 Locate
rps15 gene − 121417 121689 273 Locate
ycf1 gene − 122059 127611 5553 Locate
trnN-GUU gene + 127941 128012 72 Locate
trnR-ACG gene − 128539 128612 74 Locate
rrn5 gene − 128856 128976 121 Locate
rrn4.5 gene − 129237 129339 103 Locate
rrn23 gene − 129438 132248 2811 Locate
trnA-UGC gene − 132414 133295 882 Locate
trnI-GAU gene − 133365 134384 1020 Locate
rrn16 gene − 134683 136173 1491 Locate
trnV-GAC gene − 136394 136465 72 Locate
rps12 gene + 138129 138922 794 Locate
rps7 gene + 138976 139443 468 Locate
ndhB gene + 139709 141916 2208 Locate
trnL-CAA gene + 142488 142568 81 Locate
ycf15 gene − 142824 143072 249 Locate
ycf2 gene − 143163 149990 6828 Locate
trnI-CAU gene + 150079 150152 74 Locate
rpl23 gene + 150318 150599 282 Locate
rpl2 gene + 150618 152107 1490 Locate
Status Available
Accession NC_071850.1
Length 152,210 bp
GC content 37.9%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 0
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources