Ocimum tenuiflorum chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
trnH-GUG · NC_043873.1 · 5–79 bp · −
psbA · NC_043873.1 · 381–1,439 bp · −
matK · NC_043873.1 · 1,980–3,500 bp · −
trnK-UUU · NC_043873.1 · 4,192–4,228 bp · −
rps16 · NC_043873.1 · 4,768–4,971 bp · −
trnQ-UUG · NC_043873.1 · 6,369–6,440 bp · −
trnS-GCU · NC_043873.1 · 7,646–7,733 bp · −
atpA · NC_043873.1 · 9,611–11,134 bp · −
atpF · NC_043873.1 · 11,235–12,475 bp · −
atpH · NC_043873.1 · 12,772–13,017 bp · −
atpI · NC_043873.1 · 14,036–14,779 bp · −
rps2 · NC_043873.1 · 15,004–15,714 bp · −
rpoC2 · NC_043873.1 · 15,931–20,100 bp · −
rpoC1 · NC_043873.1 · 20,265–23,084 bp · −
rpoB · NC_043873.1 · 23,111–26,323 bp · −
psbM · NC_043873.1 · 28,841–28,945 bp · −
trnD-GUC · NC_043873.1 · 29,464–29,537 bp · −
trnY-GUA · NC_043873.1 · 29,654–29,737 bp · −
trnE-UUC · NC_043873.1 · 29,798–29,870 bp · −
trnS-UGA · NC_043873.1 · 34,485–34,576 bp · −
trnfM-CAU · NC_043873.1 · 35,585–35,658 bp · −
rps14 · NC_043873.1 · 35,803–36,105 bp · −
psaB · NC_043873.1 · 36,228–38,432 bp · −
psaA · NC_043873.1 · 38,458–40,710 bp · −
ycf3 · NC_043873.1 · 41,495–43,444 bp · −
rps4 · NC_043873.1 · 44,680–45,285 bp · −
trnT-UGU · NC_043873.1 · 45,672–45,744 bp · −
ndhJ · NC_043873.1 · 48,016–48,492 bp · −
ndhK · NC_043873.1 · 48,604–49,281 bp · −
ndhC · NC_043873.1 · 49,333–49,695 bp · −
trnV-UAC · NC_043873.1 · 50,620–51,270 bp · −
atpE · NC_043873.1 · 51,714–52,115 bp · −
atpB · NC_043873.1 · 52,112–53,608 bp · −
psbJ · NC_043873.1 · 63,337–63,459 bp · −
psbL · NC_043873.1 · 63,594–63,710 bp · −
psbF · NC_043873.1 · 63,734–63,853 bp · −
psbE · NC_043873.1 · 63,868–64,119 bp · −
trnW-CCA · NC_043873.1 · 65,493–65,566 bp · −
trnP-UGG · NC_043873.1 · 65,735–65,808 bp · −
trnP-GGG · NC_043873.1 · 65,737–65,807 bp · −
rpl20 · NC_043873.1 · 67,572–67,958 bp · −
rps12 · NC_043873.1 · 68,682–68,807 bp · −
rps12 · NC_043873.1 · 96,598–96,840 bp · −
clpP · NC_043873.1 · 68,923–70,841 bp · −
psbN · NC_043873.1 · 73,173–73,304 bp · −
rpoA · NC_043873.1 · 76,672–77,679 bp · −
rps11 · NC_043873.1 · 77,749–78,165 bp · −
rpl36 · NC_043873.1 · 78,275–78,388 bp · −
infA · NC_043873.1 · 78,484–78,717 bp · −
rps8 · NC_043873.1 · 78,854–79,258 bp · −
rpl14 · NC_043873.1 · 79,430–79,798 bp · −
rpl16 · NC_043873.1 · 79,930–80,289 bp · −
rps3 · NC_043873.1 · 81,338–82,000 bp · −
rpl22 · NC_043873.1 · 81,985–82,458 bp · −
rps19 · NC_043873.1 · 82,540–82,827 bp · −
rpl2 · NC_043873.1 · 82,883–84,361 bp · −
rpl23 · NC_043873.1 · 84,380–84,661 bp · −
trnI-CAU · NC_043873.1 · 84,827–84,900 bp · −
trnL-CAA · NC_043873.1 · 92,410–92,490 bp · −
ndhB · NC_043873.1 · 93,065–95,272 bp · −
rps7 · NC_043873.1 · 95,526–95,993 bp · −
trnN-GUU · NC_043873.1 · 106,967–107,039 bp · −
ndhF · NC_043873.1 · 108,405–110,642 bp · −
ndhD · NC_043873.1 · 113,338–114,867 bp · −
psaC · NC_043873.1 · 114,958–115,203 bp · −
ndhE · NC_043873.1 · 115,459–115,764 bp · −
ndhG · NC_043873.1 · 115,968–116,498 bp · −
ndhI · NC_043873.1 · 116,861–117,367 bp · −
ndhA · NC_043873.1 · 117,448–119,562 bp · −
ndhH · NC_043873.1 · 119,564–120,745 bp · −
rps15 · NC_043873.1 · 120,860–121,132 bp · −
ycf1 · NC_043873.1 · 121,567–127,131 bp · −
trnR-ACG · NC_043873.1 · 128,109–128,182 bp · −
FPH81_pgr004 · NC_043873.1 · 128,426–128,546 bp · −
FPH81_pgr003 · NC_043873.1 · 128,802–128,904 bp · −
FPH81_pgr002 · NC_043873.1 · 129,003–131,812 bp · −
trnA-UGC · NC_043873.1 · 131,978–132,855 bp · −
trnI-GAU · NC_043873.1 · 132,920–133,936 bp · −
FPH81_pgr001 · NC_043873.1 · 134,242–135,731 bp · −
trnV-GAC · NC_043873.1 · 135,953–136,024 bp · −
ycf15 · NC_043873.1 · 142,354–142,602 bp · −
ycf2 · NC_043873.1 · 142,693–149,514 bp · −
psbK · NC_043873.1 · 6,805–6,990 bp · +
psbI · NC_043873.1 · 7,384–7,494 bp · +
trnR-UCU · NC_043873.1 · 9,435–9,506 bp · +
trnC-GCA · NC_043873.1 · 27,504–27,584 bp · +
petN · NC_043873.1 · 27,731–27,826 bp · +
trnT-GGU · NC_043873.1 · 30,480–30,551 bp · +
trnM-CAU · NC_043873.1 · 30,486–30,544 bp · +
psbD · NC_043873.1 · 31,819–32,880 bp · +
psbC · NC_043873.1 · 32,828–34,249 bp · +
psbZ · NC_043873.1 · 34,911–35,099 bp · +
trnG-UCC · NC_043873.1 · 35,344–35,414 bp · +
trnS-GGA · NC_043873.1 · 44,299–44,385 bp · +
trnL-UAA · NC_043873.1 · 46,434–46,988 bp · +
trnF-GAA · NC_043873.1 · 47,264–47,336 bp · +
trnM-CAU · NC_043873.1 · 51,452–51,523 bp · +
rbcL · NC_043873.1 · 54,368–55,822 bp · +
accD · NC_043873.1 · 56,445–58,055 bp · +
psaI · NC_043873.1 · 58,781–58,891 bp · +
ycf4 · NC_043873.1 · 59,336–59,890 bp · +
cemA · NC_043873.1 · 60,485–61,174 bp · +
petA · NC_043873.1 · 61,366–62,328 bp · +
petL · NC_043873.1 · 64,994–65,089 bp · +
petG · NC_043873.1 · 65,257–65,370 bp · +
psaJ · NC_043873.1 · 66,090–66,224 bp · +
rpl33 · NC_043873.1 · 66,673–66,873 bp · +
rps18 · NC_043873.1 · 67,034–67,339 bp · +
rps12 · NC_043873.1 · 137,669–137,911 bp · +
psbB · NC_043873.1 · 71,298–72,824 bp · +
psbT · NC_043873.1 · 73,006–73,107 bp · +
psbH · NC_043873.1 · 73,392–73,628 bp · +
petB · NC_043873.1 · 74,455–75,114 bp · +
petD · NC_043873.1 · 75,976–76,500 bp · +
ycf2 · NC_043873.1 · 84,995–91,816 bp · +
ycf15 · NC_043873.1 · 91,958–92,155 bp · +
trnV-GAC · NC_043873.1 · 98,485–98,556 bp · +
FPH81_pgr008 · NC_043873.1 · 98,777–100,266 bp · +
trnI-GAU · NC_043873.1 · 100,573–101,589 bp · +
trnA-UGC · NC_043873.1 · 101,654–102,531 bp · +
FPH81_pgr007 · NC_043873.1 · 102,696–105,505 bp · +
FPH81_pgr006 · NC_043873.1 · 105,605–105,707 bp · +
FPH81_pgr005 · NC_043873.1 · 105,963–106,083 bp · +
trnR-ACG · NC_043873.1 · 106,327–106,400 bp · +
ycf1 · NC_043873.1 · 107,381–108,511 bp · +
rpl32 · NC_043873.1 · 111,112–111,285 bp · +
trnL-UAG · NC_043873.1 · 111,979–112,058 bp · +
ccsA · NC_043873.1 · 112,148–113,119 bp · +
trnN-GUU · NC_043873.1 · 127,470–127,542 bp · +
rps7 · NC_043873.1 · 138,516–138,983 bp · +
ndhB · NC_043873.1 · 139,237–141,444 bp · +
trnL-CAA · NC_043873.1 · 142,019–142,099 bp · +
trnI-CAU · NC_043873.1 · 149,609–149,682 bp · +
rpl23 · NC_043873.1 · 149,848–150,129 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Ocimum tenuiflorum
ANNOTATED PLASTOME
NC_043873.1
151,744 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
0 37936 75872 113808 151744 bp
Forward strand 5′ → 3′
psbK psbI trnR-UCU trnC-GCA petN trnT-GGU trnM-CAU psbD psbC psbZ trnG-UCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC FPH81_pgr008 trnI-GAU trnA-UGC FPH81_pgr007 FPH81_pgr006 FPH81_pgr005 trnR-ACG ycf1 rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23
trnH-GUG psbA matK trnK-UUU rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG trnP-GGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG FPH81_pgr004 FPH81_pgr003 FPH81_pgr002 trnA-UGC trnI-GAU FPH81_pgr001 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 5 79 75 Locate
psbA gene − 381 1439 1059 Locate
matK gene − 1980 3500 1521 Locate
trnK-UUU gene − 4192 4228 37 Locate
rps16 gene − 4768 4971 204 Locate
trnQ-UUG gene − 6369 6440 72 Locate
psbK gene + 6805 6990 186 Locate
psbI gene + 7384 7494 111 Locate
trnS-GCU gene − 7646 7733 88 Locate
trnR-UCU gene + 9435 9506 72 Locate
atpA gene − 9611 11134 1524 Locate
atpF gene − 11235 12475 1241 Locate
atpH gene − 12772 13017 246 Locate
atpI gene − 14036 14779 744 Locate
rps2 gene − 15004 15714 711 Locate
rpoC2 gene − 15931 20100 4170 Locate
rpoC1 gene − 20265 23084 2820 Locate
rpoB gene − 23111 26323 3213 Locate
trnC-GCA gene + 27504 27584 81 Locate
petN gene + 27731 27826 96 Locate
psbM gene − 28841 28945 105 Locate
trnD-GUC gene − 29464 29537 74 Locate
trnY-GUA gene − 29654 29737 84 Locate
trnE-UUC gene − 29798 29870 73 Locate
trnT-GGU gene + 30480 30551 72 Locate
trnM-CAU gene + 30486 30544 59 Locate
psbD gene + 31819 32880 1062 Locate
psbC gene + 32828 34249 1422 Locate
trnS-UGA gene − 34485 34576 92 Locate
psbZ gene + 34911 35099 189 Locate
trnG-UCC gene + 35344 35414 71 Locate
trnfM-CAU gene − 35585 35658 74 Locate
rps14 gene − 35803 36105 303 Locate
psaB gene − 36228 38432 2205 Locate
psaA gene − 38458 40710 2253 Locate
ycf3 gene − 41495 43444 1950 Locate
trnS-GGA gene + 44299 44385 87 Locate
rps4 gene − 44680 45285 606 Locate
trnT-UGU gene − 45672 45744 73 Locate
trnL-UAA gene + 46434 46988 555 Locate
trnF-GAA gene + 47264 47336 73 Locate
ndhJ gene − 48016 48492 477 Locate
ndhK gene − 48604 49281 678 Locate
ndhC gene − 49333 49695 363 Locate
trnV-UAC gene − 50620 51270 651 Locate
trnM-CAU gene + 51452 51523 72 Locate
atpE gene − 51714 52115 402 Locate
atpB gene − 52112 53608 1497 Locate
rbcL gene + 54368 55822 1455 Locate
accD gene + 56445 58055 1611 Locate
psaI gene + 58781 58891 111 Locate
ycf4 gene + 59336 59890 555 Locate
cemA gene + 60485 61174 690 Locate
petA gene + 61366 62328 963 Locate
psbJ gene − 63337 63459 123 Locate
psbL gene − 63594 63710 117 Locate
psbF gene − 63734 63853 120 Locate
psbE gene − 63868 64119 252 Locate
petL gene + 64994 65089 96 Locate
petG gene + 65257 65370 114 Locate
trnW-CCA gene − 65493 65566 74 Locate
trnP-UGG gene − 65735 65808 74 Locate
trnP-GGG gene − 65737 65807 71 Locate
psaJ gene + 66090 66224 135 Locate
rpl33 gene + 66673 66873 201 Locate
rps18 gene + 67034 67339 306 Locate
rpl20 gene − 67572 67958 387 Locate
rps12 gene − 68682 68807 126 Locate
clpP gene − 68923 70841 1919 Locate
psbB gene + 71298 72824 1527 Locate
psbT gene + 73006 73107 102 Locate
psbN gene − 73173 73304 132 Locate
psbH gene + 73392 73628 237 Locate
petB gene + 74455 75114 660 Locate
petD gene + 75976 76500 525 Locate
rpoA gene − 76672 77679 1008 Locate
rps11 gene − 77749 78165 417 Locate
rpl36 gene − 78275 78388 114 Locate
infA gene − 78484 78717 234 Locate
rps8 gene − 78854 79258 405 Locate
rpl14 gene − 79430 79798 369 Locate
rpl16 gene − 79930 80289 360 Locate
rps3 gene − 81338 82000 663 Locate
rpl22 gene − 81985 82458 474 Locate
rps19 gene − 82540 82827 288 Locate
rpl2 gene − 82883 84361 1479 Locate
rpl23 gene − 84380 84661 282 Locate
trnI-CAU gene − 84827 84900 74 Locate
ycf2 gene + 84995 91816 6822 Locate
ycf15 gene + 91958 92155 198 Locate
trnL-CAA gene − 92410 92490 81 Locate
ndhB gene − 93065 95272 2208 Locate
rps7 gene − 95526 95993 468 Locate
rps12 gene − 96598 96840 243 Locate
trnV-GAC gene + 98485 98556 72 Locate
FPH81_pgr008 gene + 98777 100266 1490 Locate
trnI-GAU gene + 100573 101589 1017 Locate
trnA-UGC gene + 101654 102531 878 Locate
FPH81_pgr007 gene + 102696 105505 2810 Locate
FPH81_pgr006 gene + 105605 105707 103 Locate
FPH81_pgr005 gene + 105963 106083 121 Locate
trnR-ACG gene + 106327 106400 74 Locate
trnN-GUU gene − 106967 107039 73 Locate
ycf1 gene + 107381 108511 1131 Locate
ndhF gene − 108405 110642 2238 Locate
rpl32 gene + 111112 111285 174 Locate
trnL-UAG gene + 111979 112058 80 Locate
ccsA gene + 112148 113119 972 Locate
ndhD gene − 113338 114867 1530 Locate
psaC gene − 114958 115203 246 Locate
ndhE gene − 115459 115764 306 Locate
ndhG gene − 115968 116498 531 Locate
ndhI gene − 116861 117367 507 Locate
ndhA gene − 117448 119562 2115 Locate
ndhH gene − 119564 120745 1182 Locate
rps15 gene − 120860 121132 273 Locate
ycf1 gene − 121567 127131 5565 Locate
trnN-GUU gene + 127470 127542 73 Locate
trnR-ACG gene − 128109 128182 74 Locate
FPH81_pgr004 gene − 128426 128546 121 Locate
FPH81_pgr003 gene − 128802 128904 103 Locate
FPH81_pgr002 gene − 129003 131812 2810 Locate
trnA-UGC gene − 131978 132855 878 Locate
trnI-GAU gene − 132920 133936 1017 Locate
FPH81_pgr001 gene − 134242 135731 1490 Locate
trnV-GAC gene − 135953 136024 72 Locate
rps12 gene + 137669 137911 243 Locate
rps7 gene + 138516 138983 468 Locate
ndhB gene + 139237 141444 2208 Locate
trnL-CAA gene + 142019 142099 81 Locate
ycf15 gene − 142354 142602 249 Locate
ycf2 gene − 142693 149514 6822 Locate
trnI-CAU gene + 149609 149682 74 Locate
rpl23 gene + 149848 150129 282 Locate
Status Available
Accession NC_043873.1
Length 151,744 bp
GC content 37.9%
Annotated genes 133
Gene sequence records 8
Translation Rna 38 Photosystem Ii 15 Other 23 Ribosomal Protein 25 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12
SSR 0
Direct 0
Inverted 0
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources