Paraphlomis albida var. albida chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · OR565920.1 · 2–76 bp · −
psbA · OR565920.1 · 310–1,368 bp · −
trnK-UUU · OR565920.1 · 1,601–4,190 bp · −
matK · OR565920.1 · 1,906–3,441 bp · −
rps16 · OR565920.1 · 5,118–6,258 bp · −
trnQ-UUG · OR565920.1 · 7,221–7,293 bp · −
trnS-GCU · OR565920.1 · 8,425–8,512 bp · −
atpA · OR565920.1 · 10,309–11,832 bp · −
atpF · OR565920.1 · 11,920–13,141 bp · −
atpH · OR565920.1 · 13,509–13,754 bp · −
atpI · OR565920.1 · 14,754–15,497 bp · −
rps2 · OR565920.1 · 15,728–16,438 bp · −
rpoC2 · OR565920.1 · 16,659–20,846 bp · −
rpoC1 · OR565920.1 · 21,001–23,832 bp · −
rpoB · OR565920.1 · 23,859–27,071 bp · −
psbM · OR565920.1 · 29,962–30,066 bp · −
trnD-GUC · OR565920.1 · 30,590–30,663 bp · −
trnY-GUA · OR565920.1 · 30,778–30,861 bp · −
trnE-UUC · OR565920.1 · 30,921–30,990 bp · −
trnS-UGA · OR565920.1 · 35,545–35,637 bp · −
trnfM-CAU · OR565920.1 · 36,600–36,673 bp · −
rps14 · OR565920.1 · 36,823–37,125 bp · −
psaB · OR565920.1 · 37,253–39,457 bp · −
psaA · OR565920.1 · 39,483–41,735 bp · −
ycf3 · OR565920.1 · 42,463–44,420 bp · −
rps4 · OR565920.1 · 45,134–45,739 bp · −
trnT-UGU · OR565920.1 · 46,130–46,202 bp · −
ndhJ · OR565920.1 · 48,484–48,978 bp · −
ndhK · OR565920.1 · 49,061–49,738 bp · −
ndhC · OR565920.1 · 49,792–50,154 bp · −
trnV-UAC · OR565920.1 · 51,120–51,766 bp · −
atpE · OR565920.1 · 52,245–52,646 bp · −
atpB · OR565920.1 · 52,643–54,139 bp · −
psbJ · OR565920.1 · 63,824–63,946 bp · −
psbL · OR565920.1 · 64,084–64,200 bp · −
psbF · OR565920.1 · 64,224–64,343 bp · −
psbE · OR565920.1 · 64,358–64,609 bp · −
trnW-CCA · OR565920.1 · 66,047–66,120 bp · −
trnP-UGG · OR565920.1 · 66,290–66,363 bp · −
rpl20 · OR565920.1 · 68,078–68,464 bp · −
rps12 · OR565920.1 · 69,231–69,344 bp · −
rps12 · OR565920.1 · 96,580–97,373 bp · −
clpP · OR565920.1 · 69,471–71,335 bp · −
psbN · OR565920.1 · 73,653–73,784 bp · −
rpoA · OR565920.1 · 77,191–78,204 bp · −
rps11 · OR565920.1 · 78,276–78,707 bp · −
rpl36 · OR565920.1 · 78,795–78,908 bp · −
infA · OR565920.1 · 79,004–79,237 bp · −
rps8 · OR565920.1 · 79,362–79,775 bp · −
rpl14 · OR565920.1 · 79,966–80,334 bp · −
rpl16 · OR565920.1 · 80,461–81,767 bp · −
rps3 · OR565920.1 · 81,914–82,576 bp · −
rpl22 · OR565920.1 · 82,561–83,025 bp · −
rps19 · OR565920.1 · 83,085–83,363 bp · −
rpl2 · OR565920.1 · 83,416–84,907 bp · −
rpl23 · OR565920.1 · 84,926–85,207 bp · −
trnI-CAU · OR565920.1 · 85,373–85,446 bp · −
trnL-CAA · OR565920.1 · 92,953–93,033 bp · −
ndhB · OR565920.1 · 93,573–95,784 bp · −
rps7 · OR565920.1 · 96,059–96,526 bp · −
trnN-GUU · OR565920.1 · 107,474–107,545 bp · −
ndhF · OR565920.1 · 108,935–111,157 bp · −
ndhD · OR565920.1 · 113,881–115,401 bp · −
psaC · OR565920.1 · 115,501–115,746 bp · −
ndhE · OR565920.1 · 116,009–116,314 bp · −
ndhG · OR565920.1 · 116,533–117,063 bp · −
ndhI · OR565920.1 · 117,443–117,940 bp · −
ndhA · OR565920.1 · 118,027–120,186 bp · −
ndhH · OR565920.1 · 120,188–121,369 bp · −
rps15 · OR565920.1 · 121,470–121,805 bp · −
ycf1 · OR565920.1 · 122,123–127,675 bp · −
trnR-ACG · OR565920.1 · 128,640–128,712 bp · −
rrn5 · OR565920.1 · 128,947–129,067 bp · −
rrn4.5 · OR565920.1 · 129,323–129,425 bp · −
rrn23 · OR565920.1 · 129,524–132,333 bp · −
trnA-UGC · OR565920.1 · 132,526–133,404 bp · −
trnI-GAU · OR565920.1 · 133,469–134,477 bp · −
rrn16 · OR565920.1 · 134,767–136,257 bp · −
trnV-GAC · OR565920.1 · 136,485–136,556 bp · −
ycf15 · OR565920.1 · 142,854–143,102 bp · −
ycf2 · OR565920.1 · 143,145–150,011 bp · −
psbK · OR565920.1 · 7,630–7,815 bp · +
psbI · OR565920.1 · 8,191–8,301 bp · +
trnG-UCC · OR565920.1 · 9,205–9,964 bp · +
trnR-UCU · OR565920.1 · 10,138–10,212 bp · +
trnC-GCA · OR565920.1 · 28,173–28,253 bp · +
petN · OR565920.1 · 29,085–29,174 bp · +
trnT-GGU · OR565920.1 · 31,564–31,634 bp · +
psbD · OR565920.1 · 32,884–33,945 bp · +
psbC · OR565920.1 · 33,893–35,314 bp · +
psbZ · OR565920.1 · 35,962–36,150 bp · +
trnG-GCC · OR565920.1 · 36,380–36,450 bp · +
trnS-GGA · OR565920.1 · 44,750–44,836 bp · +
trnL-UAA · OR565920.1 · 46,884–47,457 bp · +
trnF-GAA · OR565920.1 · 47,749–47,821 bp · +
trnM-CAU · OR565920.1 · 51,955–52,027 bp · +
rbcL · OR565920.1 · 54,946–56,400 bp · +
accD · OR565920.1 · 57,090–58,556 bp · +
psaI · OR565920.1 · 59,243–59,353 bp · +
ycf4 · OR565920.1 · 59,789–60,343 bp · +
cemA · OR565920.1 · 60,911–61,600 bp · +
petA · OR565920.1 · 61,817–62,779 bp · +
petL · OR565920.1 · 65,538–65,633 bp · +
petG · OR565920.1 · 65,808–65,921 bp · +
psaJ · OR565920.1 · 66,638–66,772 bp · +
rpl33 · OR565920.1 · 67,246–67,446 bp · +
rps18 · OR565920.1 · 67,593–67,898 bp · +
rps12 · OR565920.1 · 138,173–138,966 bp · +
psbB · OR565920.1 · 71,773–73,299 bp · +
psbT · OR565920.1 · 73,485–73,592 bp · +
psbH · OR565920.1 · 73,888–74,109 bp · +
petB · OR565920.1 · 74,234–75,612 bp · +
petD · OR565920.1 · 75,807–77,028 bp · +
ycf2 · OR565920.1 · 85,535–92,401 bp · +
ycf15 · OR565920.1 · 92,444–92,692 bp · +
trnV-GAC · OR565920.1 · 98,990–99,061 bp · +
rrn16 · OR565920.1 · 99,289–100,779 bp · +
trnI-GAU · OR565920.1 · 101,069–102,077 bp · +
trnA-UGC · OR565920.1 · 102,142–103,020 bp · +
rrn23 · OR565920.1 · 103,213–106,022 bp · +
rrn4.5 · OR565920.1 · 106,121–106,223 bp · +
rrn5 · OR565920.1 · 106,479–106,599 bp · +
trnR-ACG · OR565920.1 · 106,834–106,906 bp · +
rpl32 · OR565920.1 · 111,662–111,838 bp · +
trnL-UAG · OR565920.1 · 112,562–112,641 bp · +
ccsA · OR565920.1 · 112,726–113,697 bp · +
trnN-GUU · OR565920.1 · 128,001–128,072 bp · +
rps7 · OR565920.1 · 139,020–139,487 bp · +
ndhB · OR565920.1 · 139,762–141,973 bp · +
trnL-CAA · OR565920.1 · 142,513–142,593 bp · +
trnI-CAU · OR565920.1 · 150,100–150,173 bp · +
rpl23 · OR565920.1 · 150,339–150,620 bp · +
rpl2 · OR565920.1 · 150,639–152,130 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Paraphlomis albida var. albida
ANNOTATED PLASTOME
OR565920.1
152,224 bp · 132 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38056 76112 114168 152224 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
133 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 2 76 75 Locate
psbA gene − 310 1368 1059 Locate
trnK-UUU gene − 1601 4190 2590 Locate
matK gene − 1906 3441 1536 Locate
rps16 gene − 5118 6258 1141 Locate
trnQ-UUG gene − 7221 7293 73 Locate
psbK gene + 7630 7815 186 Locate
psbI gene + 8191 8301 111 Locate
trnS-GCU gene − 8425 8512 88 Locate
trnG-UCC gene + 9205 9964 760 Locate
trnR-UCU gene + 10138 10212 75 Locate
atpA gene − 10309 11832 1524 Locate
atpF gene − 11920 13141 1222 Locate
atpH gene − 13509 13754 246 Locate
atpI gene − 14754 15497 744 Locate
rps2 gene − 15728 16438 711 Locate
rpoC2 gene − 16659 20846 4188 Locate
rpoC1 gene − 21001 23832 2832 Locate
rpoB gene − 23859 27071 3213 Locate
trnC-GCA gene + 28173 28253 81 Locate
petN gene + 29085 29174 90 Locate
psbM gene − 29962 30066 105 Locate
trnD-GUC gene − 30590 30663 74 Locate
trnY-GUA gene − 30778 30861 84 Locate
trnE-UUC gene − 30921 30990 70 Locate
trnT-GGU gene + 31564 31634 71 Locate
psbD gene + 32884 33945 1062 Locate
psbC gene + 33893 35314 1422 Locate
trnS-UGA gene − 35545 35637 93 Locate
psbZ gene + 35962 36150 189 Locate
trnG-GCC gene + 36380 36450 71 Locate
trnfM-CAU gene − 36600 36673 74 Locate
rps14 gene − 36823 37125 303 Locate
psaB gene − 37253 39457 2205 Locate
psaA gene − 39483 41735 2253 Locate
ycf3 gene − 42463 44420 1958 Locate
trnS-GGA gene + 44750 44836 87 Locate
rps4 gene − 45134 45739 606 Locate
trnT-UGU gene − 46130 46202 73 Locate
trnL-UAA gene + 46884 47457 574 Locate
trnF-GAA gene + 47749 47821 73 Locate
ndhJ gene − 48484 48978 495 Locate
ndhK gene − 49061 49738 678 Locate
ndhC gene − 49792 50154 363 Locate
trnV-UAC gene − 51120 51766 647 Locate
trnM-CAU gene + 51955 52027 73 Locate
atpE gene − 52245 52646 402 Locate
atpB gene − 52643 54139 1497 Locate
rbcL gene + 54946 56400 1455 Locate
accD gene + 57090 58556 1467 Locate
psaI gene + 59243 59353 111 Locate
ycf4 gene + 59789 60343 555 Locate
cemA gene + 60911 61600 690 Locate
petA gene + 61817 62779 963 Locate
psbJ gene − 63824 63946 123 Locate
psbL gene − 64084 64200 117 Locate
psbF gene − 64224 64343 120 Locate
psbE gene − 64358 64609 252 Locate
petL gene + 65538 65633 96 Locate
petG gene + 65808 65921 114 Locate
trnW-CCA gene − 66047 66120 74 Locate
trnP-UGG gene − 66290 66363 74 Locate
psaJ gene + 66638 66772 135 Locate
rpl33 gene + 67246 67446 201 Locate
rps18 gene + 67593 67898 306 Locate
rpl20 gene − 68078 68464 387 Locate
rps12 gene − 69231 69344 114 Locate
clpP gene − 69471 71335 1865 Locate
psbB gene + 71773 73299 1527 Locate
psbT gene + 73485 73592 108 Locate
psbN gene − 73653 73784 132 Locate
psbH gene + 73888 74109 222 Locate
petB gene + 74234 75612 1379 Locate
petD gene + 75807 77028 1222 Locate
rpoA gene − 77191 78204 1014 Locate
rps11 gene − 78276 78707 432 Locate
rpl36 gene − 78795 78908 114 Locate
infA gene − 79004 79237 234 Locate
rps8 gene − 79362 79775 414 Locate
rpl14 gene − 79966 80334 369 Locate
rpl16 gene − 80461 81767 1307 Locate
rps3 gene − 81914 82576 663 Locate
rpl22 gene − 82561 83025 465 Locate
rps19 gene − 83085 83363 279 Locate
rpl2 gene − 83416 84907 1492 Locate
rpl23 gene − 84926 85207 282 Locate
trnI-CAU gene − 85373 85446 74 Locate
ycf2 gene + 85535 92401 6867 Locate
ycf15 gene + 92444 92692 249 Locate
trnL-CAA gene − 92953 93033 81 Locate
ndhB gene − 93573 95784 2212 Locate
rps7 gene − 96059 96526 468 Locate
rps12 gene − 96580 97373 794 Locate
trnV-GAC gene + 98990 99061 72 Locate
rrn16 gene + 99289 100779 1491 Locate
trnI-GAU gene + 101069 102077 1009 Locate
trnA-UGC gene + 102142 103020 879 Locate
rrn23 gene + 103213 106022 2810 Locate
rrn4.5 gene + 106121 106223 103 Locate
rrn5 gene + 106479 106599 121 Locate
trnR-ACG gene + 106834 106906 73 Locate
trnN-GUU gene − 107474 107545 72 Locate
ndhF gene − 108935 111157 2223 Locate
rpl32 gene + 111662 111838 177 Locate
trnL-UAG gene + 112562 112641 80 Locate
ccsA gene + 112726 113697 972 Locate
ndhD gene − 113881 115401 1521 Locate
psaC gene − 115501 115746 246 Locate
ndhE gene − 116009 116314 306 Locate
ndhG gene − 116533 117063 531 Locate
ndhI gene − 117443 117940 498 Locate
ndhA gene − 118027 120186 2160 Locate
ndhH gene − 120188 121369 1182 Locate
rps15 gene − 121470 121805 336 Locate
ycf1 gene − 122123 127675 5553 Locate
trnN-GUU gene + 128001 128072 72 Locate
trnR-ACG gene − 128640 128712 73 Locate
rrn5 gene − 128947 129067 121 Locate
rrn4.5 gene − 129323 129425 103 Locate
rrn23 gene − 129524 132333 2810 Locate
trnA-UGC gene − 132526 133404 879 Locate
trnI-GAU gene − 133469 134477 1009 Locate
rrn16 gene − 134767 136257 1491 Locate
trnV-GAC gene − 136485 136556 72 Locate
rps12 gene + 138173 138966 794 Locate
rps7 gene + 139020 139487 468 Locate
ndhB gene + 139762 141973 2212 Locate
trnL-CAA gene + 142513 142593 81 Locate
ycf15 gene − 142854 143102 249 Locate
ycf2 gene − 143145 150011 6867 Locate
trnI-CAU gene + 150100 150173 74 Locate
rpl23 gene + 150339 150620 282 Locate
rpl2 gene + 150639 152130 1492 Locate
Status Available
Accession OR565920.1
Length 152,224 bp
GC content 38.4%
Annotated genes 132
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 14 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources