Paraphlomis albida var. brevidens chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · OR565938.1 · 2–76 bp · −
psbA · OR565938.1 · 309–1,367 bp · −
trnK-UUU · OR565938.1 · 1,600–4,189 bp · −
matK · OR565938.1 · 1,905–3,440 bp · −
rps16 · OR565938.1 · 5,116–6,256 bp · −
trnQ-UUG · OR565938.1 · 7,219–7,291 bp · −
trnS-GCU · OR565938.1 · 8,423–8,510 bp · −
atpA · OR565938.1 · 10,307–11,830 bp · −
atpF · OR565938.1 · 11,918–13,139 bp · −
atpH · OR565938.1 · 13,505–13,750 bp · −
atpI · OR565938.1 · 14,750–15,493 bp · −
rps2 · OR565938.1 · 15,724–16,434 bp · −
rpoC2 · OR565938.1 · 16,734–20,843 bp · −
rpoC1 · OR565938.1 · 20,998–23,829 bp · −
rpoB · OR565938.1 · 23,856–27,068 bp · −
psbM · OR565938.1 · 29,959–30,063 bp · −
trnD-GUC · OR565938.1 · 30,587–30,660 bp · −
trnY-GUA · OR565938.1 · 30,775–30,858 bp · −
trnE-UUC · OR565938.1 · 30,918–30,990 bp · −
trnS-UGA · OR565938.1 · 35,534–35,626 bp · −
trnfM-CAU · OR565938.1 · 36,589–36,662 bp · −
rps14 · OR565938.1 · 36,812–37,114 bp · −
psaB · OR565938.1 · 37,242–39,446 bp · −
psaA · OR565938.1 · 39,472–41,724 bp · −
ycf3 · OR565938.1 · 42,452–44,408 bp · −
rps4 · OR565938.1 · 45,123–45,728 bp · −
trnT-UGU · OR565938.1 · 46,119–46,191 bp · −
ndhJ · OR565938.1 · 48,470–48,964 bp · −
ndhK · OR565938.1 · 49,047–49,724 bp · −
ndhC · OR565938.1 · 49,778–50,140 bp · −
trnV-UAC · OR565938.1 · 51,106–51,752 bp · −
atpE · OR565938.1 · 52,231–52,632 bp · −
atpB · OR565938.1 · 52,629–54,119 bp · −
psbJ · OR565938.1 · 63,807–63,929 bp · −
psbL · OR565938.1 · 64,067–64,183 bp · −
psbF · OR565938.1 · 64,207–64,326 bp · −
psbE · OR565938.1 · 64,341–64,592 bp · −
trnW-CCA · OR565938.1 · 66,025–66,098 bp · −
trnP-UGG · OR565938.1 · 66,268–66,341 bp · −
rpl20 · OR565938.1 · 68,055–68,441 bp · −
rps12 · OR565938.1 · 69,209–69,322 bp · −
rps12 · OR565938.1 · 96,560–97,353 bp · −
clpP · OR565938.1 · 69,449–71,314 bp · −
psbN · OR565938.1 · 73,633–73,764 bp · −
rpoA · OR565938.1 · 77,171–78,184 bp · −
rps11 · OR565938.1 · 78,256–78,687 bp · −
rpl36 · OR565938.1 · 78,775–78,888 bp · −
infA · OR565938.1 · 78,984–79,217 bp · −
rps8 · OR565938.1 · 79,342–79,755 bp · −
rpl14 · OR565938.1 · 79,946–80,314 bp · −
rpl16 · OR565938.1 · 80,441–81,747 bp · −
rps3 · OR565938.1 · 81,894–82,556 bp · −
rpl22 · OR565938.1 · 82,541–83,005 bp · −
rps19 · OR565938.1 · 83,065–83,343 bp · −
rpl2 · OR565938.1 · 83,396–84,887 bp · −
rpl23 · OR565938.1 · 84,906–85,187 bp · −
trnI-CAU · OR565938.1 · 85,353–85,426 bp · −
trnL-CAA · OR565938.1 · 92,933–93,013 bp · −
ndhB · OR565938.1 · 93,553–95,764 bp · −
rps7 · OR565938.1 · 96,039–96,506 bp · −
trnN-GUU · OR565938.1 · 107,454–107,525 bp · −
ndhF · OR565938.1 · 108,915–111,137 bp · −
ndhD · OR565938.1 · 113,861–115,381 bp · −
psaC · OR565938.1 · 115,481–115,726 bp · −
ndhE · OR565938.1 · 115,989–116,294 bp · −
ndhG · OR565938.1 · 116,516–117,046 bp · −
ndhI · OR565938.1 · 117,425–117,922 bp · −
ndhA · OR565938.1 · 118,009–120,168 bp · −
ndhH · OR565938.1 · 120,170–121,351 bp · −
rps15 · OR565938.1 · 121,452–121,724 bp · −
ycf1 · OR565938.1 · 122,105–127,657 bp · −
trnR-ACG · OR565938.1 · 128,622–128,694 bp · −
rrn5 · OR565938.1 · 128,929–129,049 bp · −
rrn4.5 · OR565938.1 · 129,305–129,407 bp · −
rrn23 · OR565938.1 · 129,506–132,315 bp · −
trnA-UGC · OR565938.1 · 132,508–133,386 bp · −
trnI-GAU · OR565938.1 · 133,451–134,459 bp · −
rrn16 · OR565938.1 · 134,749–136,239 bp · −
trnV-GAC · OR565938.1 · 136,467–136,538 bp · −
ycf15 · OR565938.1 · 142,836–143,084 bp · −
ycf2 · OR565938.1 · 143,127–149,993 bp · −
psbK · OR565938.1 · 7,628–7,813 bp · +
psbI · OR565938.1 · 8,189–8,299 bp · +
trnG-UCC · OR565938.1 · 9,203–9,962 bp · +
trnR-UCU · OR565938.1 · 10,139–10,210 bp · +
trnC-GCA · OR565938.1 · 28,170–28,250 bp · +
petN · OR565938.1 · 29,076–29,171 bp · +
trnT-GGU · OR565938.1 · 31,550–31,620 bp · +
psbD · OR565938.1 · 32,873–33,934 bp · +
psbC · OR565938.1 · 33,882–35,303 bp · +
psbZ · OR565938.1 · 35,951–36,139 bp · +
trnG-GCC · OR565938.1 · 36,369–36,439 bp · +
trnS-GGA · OR565938.1 · 44,738–44,824 bp · +
trnL-UAA · OR565938.1 · 46,870–47,443 bp · +
trnF-GAA · OR565938.1 · 47,735–47,807 bp · +
trnM-CAU · OR565938.1 · 51,942–52,013 bp · +
rbcL · OR565938.1 · 54,908–56,383 bp · +
accD · OR565938.1 · 57,073–58,539 bp · +
psaI · OR565938.1 · 59,226–59,336 bp · +
ycf4 · OR565938.1 · 59,772–60,326 bp · +
cemA · OR565938.1 · 60,894–61,583 bp · +
petA · OR565938.1 · 61,800–62,762 bp · +
petL · OR565938.1 · 65,516–65,611 bp · +
petG · OR565938.1 · 65,786–65,899 bp · +
psaJ · OR565938.1 · 66,616–66,750 bp · +
rpl33 · OR565938.1 · 67,223–67,423 bp · +
rps18 · OR565938.1 · 67,570–67,875 bp · +
rps12 · OR565938.1 · 138,155–138,948 bp · +
psbB · OR565938.1 · 71,752–73,278 bp · +
psbT · OR565938.1 · 73,465–73,572 bp · +
psbH · OR565938.1 · 73,868–74,089 bp · +
petB · OR565938.1 · 74,214–75,592 bp · +
petD · OR565938.1 · 75,787–77,008 bp · +
ycf2 · OR565938.1 · 85,515–92,381 bp · +
ycf15 · OR565938.1 · 92,424–92,672 bp · +
trnV-GAC · OR565938.1 · 98,970–99,041 bp · +
rrn16 · OR565938.1 · 99,269–100,759 bp · +
trnI-GAU · OR565938.1 · 101,049–102,057 bp · +
trnA-UGC · OR565938.1 · 102,122–103,000 bp · +
rrn23 · OR565938.1 · 103,193–106,002 bp · +
rrn4.5 · OR565938.1 · 106,101–106,203 bp · +
rrn5 · OR565938.1 · 106,459–106,579 bp · +
trnR-ACG · OR565938.1 · 106,814–106,886 bp · +
rpl32 · OR565938.1 · 111,642–111,818 bp · +
trnL-UAG · OR565938.1 · 112,542–112,621 bp · +
ccsA · OR565938.1 · 112,706–113,677 bp · +
trnN-GUU · OR565938.1 · 127,983–128,054 bp · +
rps7 · OR565938.1 · 139,002–139,469 bp · +
ndhB · OR565938.1 · 139,744–141,955 bp · +
trnL-CAA · OR565938.1 · 142,495–142,575 bp · +
trnI-CAU · OR565938.1 · 150,082–150,155 bp · +
rpl23 · OR565938.1 · 150,321–150,602 bp · +
rpl2 · OR565938.1 · 150,621–152,112 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Paraphlomis albida var. brevidens
ANNOTATED PLASTOME
OR565938.1
152,206 bp · 132 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38052 76103 114154 152206 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
133 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 2 76 75 Locate
psbA gene − 309 1367 1059 Locate
trnK-UUU gene − 1600 4189 2590 Locate
matK gene − 1905 3440 1536 Locate
rps16 gene − 5116 6256 1141 Locate
trnQ-UUG gene − 7219 7291 73 Locate
psbK gene + 7628 7813 186 Locate
psbI gene + 8189 8299 111 Locate
trnS-GCU gene − 8423 8510 88 Locate
trnG-UCC gene + 9203 9962 760 Locate
trnR-UCU gene + 10139 10210 72 Locate
atpA gene − 10307 11830 1524 Locate
atpF gene − 11918 13139 1222 Locate
atpH gene − 13505 13750 246 Locate
atpI gene − 14750 15493 744 Locate
rps2 gene − 15724 16434 711 Locate
rpoC2 gene − 16734 20843 4110 Locate
rpoC1 gene − 20998 23829 2832 Locate
rpoB gene − 23856 27068 3213 Locate
trnC-GCA gene + 28170 28250 81 Locate
petN gene + 29076 29171 96 Locate
psbM gene − 29959 30063 105 Locate
trnD-GUC gene − 30587 30660 74 Locate
trnY-GUA gene − 30775 30858 84 Locate
trnE-UUC gene − 30918 30990 73 Locate
trnT-GGU gene + 31550 31620 71 Locate
psbD gene + 32873 33934 1062 Locate
psbC gene + 33882 35303 1422 Locate
trnS-UGA gene − 35534 35626 93 Locate
psbZ gene + 35951 36139 189 Locate
trnG-GCC gene + 36369 36439 71 Locate
trnfM-CAU gene − 36589 36662 74 Locate
rps14 gene − 36812 37114 303 Locate
psaB gene − 37242 39446 2205 Locate
psaA gene − 39472 41724 2253 Locate
ycf3 gene − 42452 44408 1957 Locate
trnS-GGA gene + 44738 44824 87 Locate
rps4 gene − 45123 45728 606 Locate
trnT-UGU gene − 46119 46191 73 Locate
trnL-UAA gene + 46870 47443 574 Locate
trnF-GAA gene + 47735 47807 73 Locate
ndhJ gene − 48470 48964 495 Locate
ndhK gene − 49047 49724 678 Locate
ndhC gene − 49778 50140 363 Locate
trnV-UAC gene − 51106 51752 647 Locate
trnM-CAU gene + 51942 52013 72 Locate
atpE gene − 52231 52632 402 Locate
atpB gene − 52629 54119 1491 Locate
rbcL gene + 54908 56383 1476 Locate
accD gene + 57073 58539 1467 Locate
psaI gene + 59226 59336 111 Locate
ycf4 gene + 59772 60326 555 Locate
cemA gene + 60894 61583 690 Locate
petA gene + 61800 62762 963 Locate
psbJ gene − 63807 63929 123 Locate
psbL gene − 64067 64183 117 Locate
psbF gene − 64207 64326 120 Locate
psbE gene − 64341 64592 252 Locate
petL gene + 65516 65611 96 Locate
petG gene + 65786 65899 114 Locate
trnW-CCA gene − 66025 66098 74 Locate
trnP-UGG gene − 66268 66341 74 Locate
psaJ gene + 66616 66750 135 Locate
rpl33 gene + 67223 67423 201 Locate
rps18 gene + 67570 67875 306 Locate
rpl20 gene − 68055 68441 387 Locate
rps12 gene − 69209 69322 114 Locate
clpP gene − 69449 71314 1866 Locate
psbB gene + 71752 73278 1527 Locate
psbT gene + 73465 73572 108 Locate
psbN gene − 73633 73764 132 Locate
psbH gene + 73868 74089 222 Locate
petB gene + 74214 75592 1379 Locate
petD gene + 75787 77008 1222 Locate
rpoA gene − 77171 78184 1014 Locate
rps11 gene − 78256 78687 432 Locate
rpl36 gene − 78775 78888 114 Locate
infA gene − 78984 79217 234 Locate
rps8 gene − 79342 79755 414 Locate
rpl14 gene − 79946 80314 369 Locate
rpl16 gene − 80441 81747 1307 Locate
rps3 gene − 81894 82556 663 Locate
rpl22 gene − 82541 83005 465 Locate
rps19 gene − 83065 83343 279 Locate
rpl2 gene − 83396 84887 1492 Locate
rpl23 gene − 84906 85187 282 Locate
trnI-CAU gene − 85353 85426 74 Locate
ycf2 gene + 85515 92381 6867 Locate
ycf15 gene + 92424 92672 249 Locate
trnL-CAA gene − 92933 93013 81 Locate
ndhB gene − 93553 95764 2212 Locate
rps7 gene − 96039 96506 468 Locate
rps12 gene − 96560 97353 794 Locate
trnV-GAC gene + 98970 99041 72 Locate
rrn16 gene + 99269 100759 1491 Locate
trnI-GAU gene + 101049 102057 1009 Locate
trnA-UGC gene + 102122 103000 879 Locate
rrn23 gene + 103193 106002 2810 Locate
rrn4.5 gene + 106101 106203 103 Locate
rrn5 gene + 106459 106579 121 Locate
trnR-ACG gene + 106814 106886 73 Locate
trnN-GUU gene − 107454 107525 72 Locate
ndhF gene − 108915 111137 2223 Locate
rpl32 gene + 111642 111818 177 Locate
trnL-UAG gene + 112542 112621 80 Locate
ccsA gene + 112706 113677 972 Locate
ndhD gene − 113861 115381 1521 Locate
psaC gene − 115481 115726 246 Locate
ndhE gene − 115989 116294 306 Locate
ndhG gene − 116516 117046 531 Locate
ndhI gene − 117425 117922 498 Locate
ndhA gene − 118009 120168 2160 Locate
ndhH gene − 120170 121351 1182 Locate
rps15 gene − 121452 121724 273 Locate
ycf1 gene − 122105 127657 5553 Locate
trnN-GUU gene + 127983 128054 72 Locate
trnR-ACG gene − 128622 128694 73 Locate
rrn5 gene − 128929 129049 121 Locate
rrn4.5 gene − 129305 129407 103 Locate
rrn23 gene − 129506 132315 2810 Locate
trnA-UGC gene − 132508 133386 879 Locate
trnI-GAU gene − 133451 134459 1009 Locate
rrn16 gene − 134749 136239 1491 Locate
trnV-GAC gene − 136467 136538 72 Locate
rps12 gene + 138155 138948 794 Locate
rps7 gene + 139002 139469 468 Locate
ndhB gene + 139744 141955 2212 Locate
trnL-CAA gene + 142495 142575 81 Locate
ycf15 gene − 142836 143084 249 Locate
ycf2 gene − 143127 149993 6867 Locate
trnI-CAU gene + 150082 150155 74 Locate
rpl23 gene + 150321 150602 282 Locate
rpl2 gene + 150621 152112 1492 Locate
Status Available
Accession OR565938.1
Length 152,206 bp
GC content 38.4%
Annotated genes 132
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 14 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources