Paraphlomis caloneura chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · OR565942.1 · 2–76 bp · −
psbA · OR565942.1 · 308–1,366 bp · −
trnK-UUU · OR565942.1 · 1,599–4,189 bp · −
matK · OR565942.1 · 1,905–3,440 bp · −
rps16 · OR565942.1 · 5,115–6,255 bp · −
trnQ-UUG · OR565942.1 · 7,204–7,276 bp · −
trnS-GCU · OR565942.1 · 8,409–8,496 bp · −
atpA · OR565942.1 · 10,294–11,817 bp · −
atpF · OR565942.1 · 11,905–13,127 bp · −
atpH · OR565942.1 · 13,496–13,741 bp · −
atpI · OR565942.1 · 14,741–15,484 bp · −
rps2 · OR565942.1 · 15,715–16,425 bp · −
rpoC2 · OR565942.1 · 16,725–20,834 bp · −
rpoC1 · OR565942.1 · 20,989–23,820 bp · −
rpoB · OR565942.1 · 23,847–27,059 bp · −
psbM · OR565942.1 · 29,952–30,056 bp · −
trnD-GUC · OR565942.1 · 30,580–30,653 bp · −
trnY-GUA · OR565942.1 · 30,768–30,851 bp · −
trnE-UUC · OR565942.1 · 30,911–30,983 bp · −
trnT-GGU · OR565942.1 · 31,543–31,614 bp · −
trnS-UGA · OR565942.1 · 35,525–35,617 bp · −
trnfM-CAU · OR565942.1 · 36,580–36,653 bp · −
rps14 · OR565942.1 · 36,803–37,105 bp · −
psaB · OR565942.1 · 37,233–39,437 bp · −
psaA · OR565942.1 · 39,463–41,715 bp · −
ycf3 · OR565942.1 · 42,443–44,398 bp · −
rps4 · OR565942.1 · 45,113–45,718 bp · −
trnT-UGU · OR565942.1 · 46,109–46,181 bp · −
ndhJ · OR565942.1 · 48,470–48,946 bp · −
ndhK · OR565942.1 · 49,047–49,724 bp · −
ndhC · OR565942.1 · 49,778–50,140 bp · −
trnV-UAC · OR565942.1 · 51,106–51,752 bp · −
atpE · OR565942.1 · 52,231–52,632 bp · −
atpB · OR565942.1 · 52,629–54,119 bp · −
psbJ · OR565942.1 · 63,801–63,923 bp · −
psbL · OR565942.1 · 64,061–64,177 bp · −
psbF · OR565942.1 · 64,201–64,320 bp · −
psbE · OR565942.1 · 64,335–64,586 bp · −
trnW-CCA · OR565942.1 · 66,026–66,099 bp · −
trnP-UGG · OR565942.1 · 66,269–66,342 bp · −
rpl20 · OR565942.1 · 68,056–68,442 bp · −
rps12 · OR565942.1 · 69,210–69,323 bp · −
rps12 · OR565942.1 · 96,567–97,360 bp · −
clpP · OR565942.1 · 69,450–71,314 bp · −
psbN · OR565942.1 · 73,640–73,771 bp · −
rpoA · OR565942.1 · 77,178–78,191 bp · −
rps11 · OR565942.1 · 78,263–78,694 bp · −
rpl36 · OR565942.1 · 78,782–78,895 bp · −
infA · OR565942.1 · 78,991–79,224 bp · −
rps8 · OR565942.1 · 79,349–79,762 bp · −
rpl14 · OR565942.1 · 79,953–80,321 bp · −
rpl16 · OR565942.1 · 80,448–81,754 bp · −
rps3 · OR565942.1 · 81,901–82,563 bp · −
rpl22 · OR565942.1 · 82,548–83,012 bp · −
rps19 · OR565942.1 · 83,072–83,350 bp · −
rpl2 · OR565942.1 · 83,403–84,894 bp · −
rpl23 · OR565942.1 · 84,913–85,194 bp · −
trnI-CAU · OR565942.1 · 85,360–85,433 bp · −
trnL-CAA · OR565942.1 · 92,940–93,020 bp · −
ndhB · OR565942.1 · 93,560–95,771 bp · −
rps7 · OR565942.1 · 96,046–96,513 bp · −
trnN-GUU · OR565942.1 · 107,461–107,532 bp · −
ndhF · OR565942.1 · 108,922–111,144 bp · −
ndhD · OR565942.1 · 113,867–115,387 bp · −
psaC · OR565942.1 · 115,486–115,731 bp · −
ndhE · OR565942.1 · 115,994–116,299 bp · −
ndhG · OR565942.1 · 116,521–117,051 bp · −
ndhI · OR565942.1 · 117,430–117,927 bp · −
ndhA · OR565942.1 · 118,014–120,173 bp · −
ndhH · OR565942.1 · 120,175–121,356 bp · −
rps15 · OR565942.1 · 121,457–121,729 bp · −
ycf1 · OR565942.1 · 122,110–127,662 bp · −
trnR-ACG · OR565942.1 · 128,626–128,699 bp · −
rrn5 · OR565942.1 · 128,934–129,054 bp · −
rrn4.5 · OR565942.1 · 129,310–129,412 bp · −
rrn23 · OR565942.1 · 129,511–132,320 bp · −
trnA-UGC · OR565942.1 · 132,513–133,391 bp · −
trnI-GAU · OR565942.1 · 133,456–134,464 bp · −
rrn16 · OR565942.1 · 134,754–136,244 bp · −
trnV-GAC · OR565942.1 · 136,472–136,543 bp · −
ycf15 · OR565942.1 · 142,841–143,104 bp · −
ycf2 · OR565942.1 · 143,132–149,998 bp · −
psbK · OR565942.1 · 7,613–7,798 bp · +
psbI · OR565942.1 · 8,174–8,284 bp · +
trnG-UCC · OR565942.1 · 9,190–9,949 bp · +
trnR-UCU · OR565942.1 · 10,123–10,197 bp · +
trnC-GCA · OR565942.1 · 28,163–28,238 bp · +
petN · OR565942.1 · 29,075–29,164 bp · +
psbD · OR565942.1 · 32,864–33,925 bp · +
psbC · OR565942.1 · 33,873–35,294 bp · +
psbZ · OR565942.1 · 35,942–36,130 bp · +
trnG-GCC · OR565942.1 · 36,360–36,430 bp · +
trnS-GGA · OR565942.1 · 44,728–44,814 bp · +
trnL-UAA · OR565942.1 · 46,870–47,443 bp · +
trnF-GAA · OR565942.1 · 47,735–47,807 bp · +
trnM-CAU · OR565942.1 · 51,942–52,013 bp · +
rbcL · OR565942.1 · 54,902–56,377 bp · +
accD · OR565942.1 · 57,067–58,533 bp · +
psaI · OR565942.1 · 59,220–59,330 bp · +
ycf4 · OR565942.1 · 59,766–60,320 bp · +
cemA · OR565942.1 · 60,888–61,577 bp · +
petA · OR565942.1 · 61,794–62,756 bp · +
petL · OR565942.1 · 65,517–65,612 bp · +
petG · OR565942.1 · 65,787–65,900 bp · +
psaJ · OR565942.1 · 66,617–66,751 bp · +
rpl33 · OR565942.1 · 67,224–67,424 bp · +
rps18 · OR565942.1 · 67,571–67,876 bp · +
rps12 · OR565942.1 · 138,160–138,953 bp · +
psbB · OR565942.1 · 71,752–73,278 bp · +
psbT · OR565942.1 · 73,472–73,579 bp · +
psbH · OR565942.1 · 73,875–74,096 bp · +
petB · OR565942.1 · 74,221–75,599 bp · +
petD · OR565942.1 · 75,794–77,015 bp · +
ycf2 · OR565942.1 · 85,522–92,388 bp · +
ycf15 · OR565942.1 · 92,431–92,679 bp · +
trnV-GAC · OR565942.1 · 98,977–99,048 bp · +
rrn16 · OR565942.1 · 99,276–100,766 bp · +
trnI-GAU · OR565942.1 · 101,056–102,064 bp · +
trnA-UGC · OR565942.1 · 102,129–103,007 bp · +
rrn23 · OR565942.1 · 103,200–106,009 bp · +
rrn4.5 · OR565942.1 · 106,108–106,210 bp · +
rrn5 · OR565942.1 · 106,466–106,586 bp · +
trnR-ACG · OR565942.1 · 106,821–106,894 bp · +
rpl32 · OR565942.1 · 111,649–111,825 bp · +
trnL-UAG · OR565942.1 · 112,549–112,628 bp · +
ccsA · OR565942.1 · 112,713–113,684 bp · +
trnN-GUU · OR565942.1 · 127,988–128,059 bp · +
rps7 · OR565942.1 · 139,007–139,474 bp · +
ndhB · OR565942.1 · 139,749–141,960 bp · +
trnL-CAA · OR565942.1 · 142,500–142,580 bp · +
trnI-CAU · OR565942.1 · 150,087–150,160 bp · +
rpl23 · OR565942.1 · 150,326–150,607 bp · +
rpl2 · OR565942.1 · 150,626–152,117 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Paraphlomis caloneura
ANNOTATED PLASTOME
OR565942.1
152,211 bp · 132 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38053 76106 114158 152211 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnT-GGU trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
133 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 2 76 75 Locate
psbA gene − 308 1366 1059 Locate
trnK-UUU gene − 1599 4189 2591 Locate
matK gene − 1905 3440 1536 Locate
rps16 gene − 5115 6255 1141 Locate
trnQ-UUG gene − 7204 7276 73 Locate
psbK gene + 7613 7798 186 Locate
psbI gene + 8174 8284 111 Locate
trnS-GCU gene − 8409 8496 88 Locate
trnG-UCC gene + 9190 9949 760 Locate
trnR-UCU gene + 10123 10197 75 Locate
atpA gene − 10294 11817 1524 Locate
atpF gene − 11905 13127 1223 Locate
atpH gene − 13496 13741 246 Locate
atpI gene − 14741 15484 744 Locate
rps2 gene − 15715 16425 711 Locate
rpoC2 gene − 16725 20834 4110 Locate
rpoC1 gene − 20989 23820 2832 Locate
rpoB gene − 23847 27059 3213 Locate
trnC-GCA gene + 28163 28238 76 Locate
petN gene + 29075 29164 90 Locate
psbM gene − 29952 30056 105 Locate
trnD-GUC gene − 30580 30653 74 Locate
trnY-GUA gene − 30768 30851 84 Locate
trnE-UUC gene − 30911 30983 73 Locate
trnT-GGU gene − 31543 31614 72 Locate
psbD gene + 32864 33925 1062 Locate
psbC gene + 33873 35294 1422 Locate
trnS-UGA gene − 35525 35617 93 Locate
psbZ gene + 35942 36130 189 Locate
trnG-GCC gene + 36360 36430 71 Locate
trnfM-CAU gene − 36580 36653 74 Locate
rps14 gene − 36803 37105 303 Locate
psaB gene − 37233 39437 2205 Locate
psaA gene − 39463 41715 2253 Locate
ycf3 gene − 42443 44398 1956 Locate
trnS-GGA gene + 44728 44814 87 Locate
rps4 gene − 45113 45718 606 Locate
trnT-UGU gene − 46109 46181 73 Locate
trnL-UAA gene + 46870 47443 574 Locate
trnF-GAA gene + 47735 47807 73 Locate
ndhJ gene − 48470 48946 477 Locate
ndhK gene − 49047 49724 678 Locate
ndhC gene − 49778 50140 363 Locate
trnV-UAC gene − 51106 51752 647 Locate
trnM-CAU gene + 51942 52013 72 Locate
atpE gene − 52231 52632 402 Locate
atpB gene − 52629 54119 1491 Locate
rbcL gene + 54902 56377 1476 Locate
accD gene + 57067 58533 1467 Locate
psaI gene + 59220 59330 111 Locate
ycf4 gene + 59766 60320 555 Locate
cemA gene + 60888 61577 690 Locate
petA gene + 61794 62756 963 Locate
psbJ gene − 63801 63923 123 Locate
psbL gene − 64061 64177 117 Locate
psbF gene − 64201 64320 120 Locate
psbE gene − 64335 64586 252 Locate
petL gene + 65517 65612 96 Locate
petG gene + 65787 65900 114 Locate
trnW-CCA gene − 66026 66099 74 Locate
trnP-UGG gene − 66269 66342 74 Locate
psaJ gene + 66617 66751 135 Locate
rpl33 gene + 67224 67424 201 Locate
rps18 gene + 67571 67876 306 Locate
rpl20 gene − 68056 68442 387 Locate
rps12 gene − 69210 69323 114 Locate
clpP gene − 69450 71314 1865 Locate
psbB gene + 71752 73278 1527 Locate
psbT gene + 73472 73579 108 Locate
psbN gene − 73640 73771 132 Locate
psbH gene + 73875 74096 222 Locate
petB gene + 74221 75599 1379 Locate
petD gene + 75794 77015 1222 Locate
rpoA gene − 77178 78191 1014 Locate
rps11 gene − 78263 78694 432 Locate
rpl36 gene − 78782 78895 114 Locate
infA gene − 78991 79224 234 Locate
rps8 gene − 79349 79762 414 Locate
rpl14 gene − 79953 80321 369 Locate
rpl16 gene − 80448 81754 1307 Locate
rps3 gene − 81901 82563 663 Locate
rpl22 gene − 82548 83012 465 Locate
rps19 gene − 83072 83350 279 Locate
rpl2 gene − 83403 84894 1492 Locate
rpl23 gene − 84913 85194 282 Locate
trnI-CAU gene − 85360 85433 74 Locate
ycf2 gene + 85522 92388 6867 Locate
ycf15 gene + 92431 92679 249 Locate
trnL-CAA gene − 92940 93020 81 Locate
ndhB gene − 93560 95771 2212 Locate
rps7 gene − 96046 96513 468 Locate
rps12 gene − 96567 97360 794 Locate
trnV-GAC gene + 98977 99048 72 Locate
rrn16 gene + 99276 100766 1491 Locate
trnI-GAU gene + 101056 102064 1009 Locate
trnA-UGC gene + 102129 103007 879 Locate
rrn23 gene + 103200 106009 2810 Locate
rrn4.5 gene + 106108 106210 103 Locate
rrn5 gene + 106466 106586 121 Locate
trnR-ACG gene + 106821 106894 74 Locate
trnN-GUU gene − 107461 107532 72 Locate
ndhF gene − 108922 111144 2223 Locate
rpl32 gene + 111649 111825 177 Locate
trnL-UAG gene + 112549 112628 80 Locate
ccsA gene + 112713 113684 972 Locate
ndhD gene − 113867 115387 1521 Locate
psaC gene − 115486 115731 246 Locate
ndhE gene − 115994 116299 306 Locate
ndhG gene − 116521 117051 531 Locate
ndhI gene − 117430 117927 498 Locate
ndhA gene − 118014 120173 2160 Locate
ndhH gene − 120175 121356 1182 Locate
rps15 gene − 121457 121729 273 Locate
ycf1 gene − 122110 127662 5553 Locate
trnN-GUU gene + 127988 128059 72 Locate
trnR-ACG gene − 128626 128699 74 Locate
rrn5 gene − 128934 129054 121 Locate
rrn4.5 gene − 129310 129412 103 Locate
rrn23 gene − 129511 132320 2810 Locate
trnA-UGC gene − 132513 133391 879 Locate
trnI-GAU gene − 133456 134464 1009 Locate
rrn16 gene − 134754 136244 1491 Locate
trnV-GAC gene − 136472 136543 72 Locate
rps12 gene + 138160 138953 794 Locate
rps7 gene + 139007 139474 468 Locate
ndhB gene + 139749 141960 2212 Locate
trnL-CAA gene + 142500 142580 81 Locate
ycf15 gene − 142841 143104 264 Locate
ycf2 gene − 143132 149998 6867 Locate
trnI-CAU gene + 150087 150160 74 Locate
rpl23 gene + 150326 150607 282 Locate
rpl2 gene + 150626 152117 1492 Locate
Status Available
Accession OR565942.1
Length 152,211 bp
GC content 38.4%
Annotated genes 132
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 14 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources