Paraphlomis coronata chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · OR565918.1 · 2–76 bp · −
psbA · OR565918.1 · 324–1,382 bp · −
trnK-UUU · OR565918.1 · 1,615–4,203 bp · −
matK · OR565918.1 · 1,920–3,455 bp · −
rps16 · OR565918.1 · 5,131–6,271 bp · −
trnQ-UUG · OR565918.1 · 7,219–7,291 bp · −
trnS-GCU · OR565918.1 · 8,424–8,511 bp · −
atpA · OR565918.1 · 10,307–11,830 bp · −
atpF · OR565918.1 · 11,918–13,139 bp · −
atpH · OR565918.1 · 13,508–13,753 bp · −
atpI · OR565918.1 · 14,754–15,497 bp · −
rps2 · OR565918.1 · 15,728–16,438 bp · −
rpoC2 · OR565918.1 · 16,738–20,847 bp · −
rpoC1 · OR565918.1 · 21,002–23,833 bp · −
rpoB · OR565918.1 · 23,860–27,072 bp · −
psbM · OR565918.1 · 29,962–30,066 bp · −
trnD-GUC · OR565918.1 · 30,590–30,663 bp · −
trnY-GUA · OR565918.1 · 30,779–30,862 bp · −
trnE-UUC · OR565918.1 · 30,922–30,991 bp · −
trnS-UGA · OR565918.1 · 35,537–35,629 bp · −
trnfM-CAU · OR565918.1 · 36,592–36,665 bp · −
rps14 · OR565918.1 · 36,815–37,117 bp · −
psaB · OR565918.1 · 37,245–39,449 bp · −
psaA · OR565918.1 · 39,475–41,727 bp · −
ycf3 · OR565918.1 · 42,455–44,411 bp · −
rps4 · OR565918.1 · 45,126–45,731 bp · −
trnT-UGU · OR565918.1 · 46,122–46,194 bp · −
ndhJ · OR565918.1 · 48,472–48,948 bp · −
ndhK · OR565918.1 · 49,049–49,726 bp · −
ndhC · OR565918.1 · 49,780–50,142 bp · −
trnV-UAC · OR565918.1 · 51,108–51,752 bp · −
atpE · OR565918.1 · 52,226–52,627 bp · −
atpB · OR565918.1 · 52,624–54,120 bp · −
psbJ · OR565918.1 · 63,802–63,924 bp · −
psbL · OR565918.1 · 64,062–64,178 bp · −
psbF · OR565918.1 · 64,202–64,321 bp · −
psbE · OR565918.1 · 64,336–64,587 bp · −
trnW-CCA · OR565918.1 · 66,024–66,097 bp · −
trnP-UGG · OR565918.1 · 66,267–66,340 bp · −
rpl20 · OR565918.1 · 68,054–68,440 bp · −
rps12 · OR565918.1 · 69,207–69,320 bp · −
rps12 · OR565918.1 · 96,569–97,362 bp · −
clpP · OR565918.1 · 69,447–71,314 bp · −
psbN · OR565918.1 · 73,639–73,770 bp · −
rpoA · OR565918.1 · 77,180–78,193 bp · −
rps11 · OR565918.1 · 78,265–78,696 bp · −
rpl36 · OR565918.1 · 78,784–78,897 bp · −
infA · OR565918.1 · 78,993–79,226 bp · −
rps8 · OR565918.1 · 79,351–79,764 bp · −
rpl14 · OR565918.1 · 79,955–80,323 bp · −
rpl16 · OR565918.1 · 80,450–81,756 bp · −
rps3 · OR565918.1 · 81,903–82,565 bp · −
rpl22 · OR565918.1 · 82,550–83,014 bp · −
rps19 · OR565918.1 · 83,074–83,352 bp · −
rpl2 · OR565918.1 · 83,405–84,896 bp · −
rpl23 · OR565918.1 · 84,915–85,196 bp · −
trnI-CAU · OR565918.1 · 85,362–85,435 bp · −
trnL-CAA · OR565918.1 · 92,942–93,022 bp · −
ndhB · OR565918.1 · 93,562–95,773 bp · −
rps7 · OR565918.1 · 96,048–96,515 bp · −
trnN-GUU · OR565918.1 · 107,463–107,534 bp · −
ndhF · OR565918.1 · 108,924–111,146 bp · −
ndhD · OR565918.1 · 113,868–115,388 bp · −
psaC · OR565918.1 · 115,487–115,732 bp · −
ndhE · OR565918.1 · 115,995–116,300 bp · −
ndhG · OR565918.1 · 116,522–117,052 bp · −
ndhI · OR565918.1 · 117,431–117,928 bp · −
ndhA · OR565918.1 · 118,015–120,174 bp · −
ndhH · OR565918.1 · 120,176–121,357 bp · −
rps15 · OR565918.1 · 121,458–121,793 bp · −
ycf1 · OR565918.1 · 122,114–127,663 bp · −
trnR-ACG · OR565918.1 · 128,628–128,700 bp · −
rrn5 · OR565918.1 · 128,935–129,055 bp · −
rrn4.5 · OR565918.1 · 129,311–129,413 bp · −
rrn23 · OR565918.1 · 129,512–132,321 bp · −
trnA-UGC · OR565918.1 · 132,514–133,392 bp · −
trnI-GAU · OR565918.1 · 133,457–134,465 bp · −
rrn16 · OR565918.1 · 134,755–136,245 bp · −
trnV-GAC · OR565918.1 · 136,473–136,544 bp · −
ycf15 · OR565918.1 · 142,842–143,105 bp · −
ycf2 · OR565918.1 · 143,133–149,999 bp · −
psbK · OR565918.1 · 7,628–7,813 bp · +
psbI · OR565918.1 · 8,190–8,300 bp · +
trnG-UCC · OR565918.1 · 9,203–9,962 bp · +
trnR-UCU · OR565918.1 · 10,136–10,210 bp · +
trnC-GCA · OR565918.1 · 28,173–28,248 bp · +
petN · OR565918.1 · 29,085–29,174 bp · +
trnT-GGU · OR565918.1 · 31,554–31,624 bp · +
psbD · OR565918.1 · 32,876–33,937 bp · +
psbC · OR565918.1 · 33,885–35,306 bp · +
psbZ · OR565918.1 · 35,954–36,142 bp · +
trnG-GCC · OR565918.1 · 36,372–36,442 bp · +
trnS-GGA · OR565918.1 · 44,741–44,827 bp · +
trnL-UAA · OR565918.1 · 46,872–47,445 bp · +
trnF-GAA · OR565918.1 · 47,737–47,809 bp · +
trnM-CAU · OR565918.1 · 51,937–52,008 bp · +
rbcL · OR565918.1 · 54,903–56,378 bp · +
accD · OR565918.1 · 57,068–58,534 bp · +
psaI · OR565918.1 · 59,221–59,331 bp · +
ycf4 · OR565918.1 · 59,767–60,321 bp · +
cemA · OR565918.1 · 60,889–61,578 bp · +
petA · OR565918.1 · 61,795–62,757 bp · +
petL · OR565918.1 · 65,515–65,610 bp · +
petG · OR565918.1 · 65,785–65,898 bp · +
psaJ · OR565918.1 · 66,615–66,749 bp · +
rpl33 · OR565918.1 · 67,222–67,422 bp · +
rps18 · OR565918.1 · 67,569–67,874 bp · +
rps12 · OR565918.1 · 138,161–138,954 bp · +
psbB · OR565918.1 · 71,752–73,278 bp · +
psbT · OR565918.1 · 73,471–73,578 bp · +
psbH · OR565918.1 · 73,874–74,095 bp · +
petB · OR565918.1 · 74,220–75,601 bp · +
petD · OR565918.1 · 75,796–77,017 bp · +
ycf2 · OR565918.1 · 85,524–92,390 bp · +
ycf15 · OR565918.1 · 92,433–92,681 bp · +
trnV-GAC · OR565918.1 · 98,979–99,050 bp · +
rrn16 · OR565918.1 · 99,278–100,768 bp · +
trnI-GAU · OR565918.1 · 101,058–102,066 bp · +
trnA-UGC · OR565918.1 · 102,131–103,009 bp · +
rrn23 · OR565918.1 · 103,202–106,011 bp · +
rrn4.5 · OR565918.1 · 106,110–106,212 bp · +
rrn5 · OR565918.1 · 106,468–106,588 bp · +
trnR-ACG · OR565918.1 · 106,823–106,895 bp · +
rpl32 · OR565918.1 · 111,650–111,826 bp · +
trnL-UAG · OR565918.1 · 112,550–112,629 bp · +
ccsA · OR565918.1 · 112,714–113,685 bp · +
trnN-GUU · OR565918.1 · 127,989–128,060 bp · +
rps7 · OR565918.1 · 139,008–139,475 bp · +
ndhB · OR565918.1 · 139,750–141,961 bp · +
trnL-CAA · OR565918.1 · 142,501–142,581 bp · +
trnI-CAU · OR565918.1 · 150,088–150,161 bp · +
rpl23 · OR565918.1 · 150,327–150,608 bp · +
rpl2 · OR565918.1 · 150,627–152,118 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Paraphlomis coronata
ANNOTATED PLASTOME
OR565918.1
152,212 bp · 132 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38053 76106 114159 152212 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
133 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 2 76 75 Locate
psbA gene − 324 1382 1059 Locate
trnK-UUU gene − 1615 4203 2589 Locate
matK gene − 1920 3455 1536 Locate
rps16 gene − 5131 6271 1141 Locate
trnQ-UUG gene − 7219 7291 73 Locate
psbK gene + 7628 7813 186 Locate
psbI gene + 8190 8300 111 Locate
trnS-GCU gene − 8424 8511 88 Locate
trnG-UCC gene + 9203 9962 760 Locate
trnR-UCU gene + 10136 10210 75 Locate
atpA gene − 10307 11830 1524 Locate
atpF gene − 11918 13139 1222 Locate
atpH gene − 13508 13753 246 Locate
atpI gene − 14754 15497 744 Locate
rps2 gene − 15728 16438 711 Locate
rpoC2 gene − 16738 20847 4110 Locate
rpoC1 gene − 21002 23833 2832 Locate
rpoB gene − 23860 27072 3213 Locate
trnC-GCA gene + 28173 28248 76 Locate
petN gene + 29085 29174 90 Locate
psbM gene − 29962 30066 105 Locate
trnD-GUC gene − 30590 30663 74 Locate
trnY-GUA gene − 30779 30862 84 Locate
trnE-UUC gene − 30922 30991 70 Locate
trnT-GGU gene + 31554 31624 71 Locate
psbD gene + 32876 33937 1062 Locate
psbC gene + 33885 35306 1422 Locate
trnS-UGA gene − 35537 35629 93 Locate
psbZ gene + 35954 36142 189 Locate
trnG-GCC gene + 36372 36442 71 Locate
trnfM-CAU gene − 36592 36665 74 Locate
rps14 gene − 36815 37117 303 Locate
psaB gene − 37245 39449 2205 Locate
psaA gene − 39475 41727 2253 Locate
ycf3 gene − 42455 44411 1957 Locate
trnS-GGA gene + 44741 44827 87 Locate
rps4 gene − 45126 45731 606 Locate
trnT-UGU gene − 46122 46194 73 Locate
trnL-UAA gene + 46872 47445 574 Locate
trnF-GAA gene + 47737 47809 73 Locate
ndhJ gene − 48472 48948 477 Locate
ndhK gene − 49049 49726 678 Locate
ndhC gene − 49780 50142 363 Locate
trnV-UAC gene − 51108 51752 645 Locate
trnM-CAU gene + 51937 52008 72 Locate
atpE gene − 52226 52627 402 Locate
atpB gene − 52624 54120 1497 Locate
rbcL gene + 54903 56378 1476 Locate
accD gene + 57068 58534 1467 Locate
psaI gene + 59221 59331 111 Locate
ycf4 gene + 59767 60321 555 Locate
cemA gene + 60889 61578 690 Locate
petA gene + 61795 62757 963 Locate
psbJ gene − 63802 63924 123 Locate
psbL gene − 64062 64178 117 Locate
psbF gene − 64202 64321 120 Locate
psbE gene − 64336 64587 252 Locate
petL gene + 65515 65610 96 Locate
petG gene + 65785 65898 114 Locate
trnW-CCA gene − 66024 66097 74 Locate
trnP-UGG gene − 66267 66340 74 Locate
psaJ gene + 66615 66749 135 Locate
rpl33 gene + 67222 67422 201 Locate
rps18 gene + 67569 67874 306 Locate
rpl20 gene − 68054 68440 387 Locate
rps12 gene − 69207 69320 114 Locate
clpP gene − 69447 71314 1868 Locate
psbB gene + 71752 73278 1527 Locate
psbT gene + 73471 73578 108 Locate
psbN gene − 73639 73770 132 Locate
psbH gene + 73874 74095 222 Locate
petB gene + 74220 75601 1382 Locate
petD gene + 75796 77017 1222 Locate
rpoA gene − 77180 78193 1014 Locate
rps11 gene − 78265 78696 432 Locate
rpl36 gene − 78784 78897 114 Locate
infA gene − 78993 79226 234 Locate
rps8 gene − 79351 79764 414 Locate
rpl14 gene − 79955 80323 369 Locate
rpl16 gene − 80450 81756 1307 Locate
rps3 gene − 81903 82565 663 Locate
rpl22 gene − 82550 83014 465 Locate
rps19 gene − 83074 83352 279 Locate
rpl2 gene − 83405 84896 1492 Locate
rpl23 gene − 84915 85196 282 Locate
trnI-CAU gene − 85362 85435 74 Locate
ycf2 gene + 85524 92390 6867 Locate
ycf15 gene + 92433 92681 249 Locate
trnL-CAA gene − 92942 93022 81 Locate
ndhB gene − 93562 95773 2212 Locate
rps7 gene − 96048 96515 468 Locate
rps12 gene − 96569 97362 794 Locate
trnV-GAC gene + 98979 99050 72 Locate
rrn16 gene + 99278 100768 1491 Locate
trnI-GAU gene + 101058 102066 1009 Locate
trnA-UGC gene + 102131 103009 879 Locate
rrn23 gene + 103202 106011 2810 Locate
rrn4.5 gene + 106110 106212 103 Locate
rrn5 gene + 106468 106588 121 Locate
trnR-ACG gene + 106823 106895 73 Locate
trnN-GUU gene − 107463 107534 72 Locate
ndhF gene − 108924 111146 2223 Locate
rpl32 gene + 111650 111826 177 Locate
trnL-UAG gene + 112550 112629 80 Locate
ccsA gene + 112714 113685 972 Locate
ndhD gene − 113868 115388 1521 Locate
psaC gene − 115487 115732 246 Locate
ndhE gene − 115995 116300 306 Locate
ndhG gene − 116522 117052 531 Locate
ndhI gene − 117431 117928 498 Locate
ndhA gene − 118015 120174 2160 Locate
ndhH gene − 120176 121357 1182 Locate
rps15 gene − 121458 121793 336 Locate
ycf1 gene − 122114 127663 5550 Locate
trnN-GUU gene + 127989 128060 72 Locate
trnR-ACG gene − 128628 128700 73 Locate
rrn5 gene − 128935 129055 121 Locate
rrn4.5 gene − 129311 129413 103 Locate
rrn23 gene − 129512 132321 2810 Locate
trnA-UGC gene − 132514 133392 879 Locate
trnI-GAU gene − 133457 134465 1009 Locate
rrn16 gene − 134755 136245 1491 Locate
trnV-GAC gene − 136473 136544 72 Locate
rps12 gene + 138161 138954 794 Locate
rps7 gene + 139008 139475 468 Locate
ndhB gene + 139750 141961 2212 Locate
trnL-CAA gene + 142501 142581 81 Locate
ycf15 gene − 142842 143105 264 Locate
ycf2 gene − 143133 149999 6867 Locate
trnI-CAU gene + 150088 150161 74 Locate
rpl23 gene + 150327 150608 282 Locate
rpl2 gene + 150627 152118 1492 Locate
Status Available
Accession OR565918.1
Length 152,212 bp
GC content 38.4%
Annotated genes 132
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 14 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources