Paraphlomis foliata subsp. montigena chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · OR565931.1 · 2–76 bp · −
psbA · OR565931.1 · 307–1,365 bp · −
trnK-UUU · OR565931.1 · 1,598–4,181 bp · −
matK · OR565931.1 · 1,897–3,432 bp · −
rps16 · OR565931.1 · 5,109–6,254 bp · −
trnQ-UUG · OR565931.1 · 7,203–7,274 bp · −
trnS-GCU · OR565931.1 · 8,408–8,495 bp · −
atpA · OR565931.1 · 10,281–11,804 bp · −
atpF · OR565931.1 · 11,892–13,112 bp · −
atpH · OR565931.1 · 13,478–13,723 bp · −
atpI · OR565931.1 · 14,759–15,502 bp · −
rps2 · OR565931.1 · 15,733–16,443 bp · −
rpoC2 · OR565931.1 · 16,664–20,851 bp · −
rpoC1 · OR565931.1 · 21,006–23,836 bp · −
rpoB · OR565931.1 · 23,863–27,075 bp · −
psbM · OR565931.1 · 29,971–30,075 bp · −
trnD-GUC · OR565931.1 · 30,599–30,672 bp · −
trnY-GUA · OR565931.1 · 30,787–30,870 bp · −
trnE-UUC · OR565931.1 · 30,930–30,999 bp · −
trnS-UGA · OR565931.1 · 35,546–35,638 bp · −
trnfM-CAU · OR565931.1 · 36,588–36,661 bp · −
rps14 · OR565931.1 · 36,811–37,113 bp · −
psaB · OR565931.1 · 37,241–39,445 bp · −
psaA · OR565931.1 · 39,471–41,723 bp · −
ycf3 · OR565931.1 · 42,451–44,404 bp · −
rps4 · OR565931.1 · 45,105–45,710 bp · −
trnT-UGU · OR565931.1 · 46,101–46,173 bp · −
ndhJ · OR565931.1 · 48,453–48,947 bp · −
ndhK · OR565931.1 · 49,030–49,707 bp · −
ndhC · OR565931.1 · 49,761–50,123 bp · −
trnV-UAC · OR565931.1 · 51,089–51,741 bp · −
atpE · OR565931.1 · 52,220–52,621 bp · −
atpB · OR565931.1 · 52,618–54,114 bp · −
psbJ · OR565931.1 · 63,762–63,884 bp · −
psbL · OR565931.1 · 64,022–64,138 bp · −
psbF · OR565931.1 · 64,162–64,281 bp · −
psbE · OR565931.1 · 64,296–64,547 bp · −
trnW-CCA · OR565931.1 · 65,989–66,062 bp · −
trnP-UGG · OR565931.1 · 66,232–66,305 bp · −
rpl20 · OR565931.1 · 68,018–68,404 bp · −
rps12 · OR565931.1 · 69,171–69,284 bp · −
rps12 · OR565931.1 · 96,560–97,353 bp · −
clpP · OR565931.1 · 69,411–71,275 bp · −
psbN · OR565931.1 · 73,600–73,731 bp · −
rpoA · OR565931.1 · 77,130–78,143 bp · −
rps11 · OR565931.1 · 78,215–78,670 bp · −
rpl36 · OR565931.1 · 78,758–78,871 bp · −
infA · OR565931.1 · 78,967–79,200 bp · −
rps8 · OR565931.1 · 79,329–79,742 bp · −
rpl14 · OR565931.1 · 79,933–80,301 bp · −
rpl16 · OR565931.1 · 80,428–81,734 bp · −
rps3 · OR565931.1 · 81,881–82,543 bp · −
rpl22 · OR565931.1 · 82,528–82,992 bp · −
rps19 · OR565931.1 · 83,052–83,330 bp · −
rpl2 · OR565931.1 · 83,382–84,873 bp · −
rpl23 · OR565931.1 · 84,892–85,173 bp · −
trnI-CAU · OR565931.1 · 85,339–85,412 bp · −
trnL-CAA · OR565931.1 · 92,937–93,017 bp · −
ndhB · OR565931.1 · 93,553–95,764 bp · −
rps7 · OR565931.1 · 96,039–96,506 bp · −
trnN-GUU · OR565931.1 · 107,454–107,525 bp · −
ndhF · OR565931.1 · 108,915–111,131 bp · −
ndhD · OR565931.1 · 113,854–115,374 bp · −
psaC · OR565931.1 · 115,473–115,718 bp · −
ndhE · OR565931.1 · 115,981–116,286 bp · −
ndhG · OR565931.1 · 116,508–117,038 bp · −
ndhI · OR565931.1 · 117,417–117,923 bp · −
ndhA · OR565931.1 · 118,010–120,168 bp · −
ndhH · OR565931.1 · 120,170–121,351 bp · −
rps15 · OR565931.1 · 121,464–121,796 bp · −
ycf1 · OR565931.1 · 122,114–127,657 bp · −
trnR-ACG · OR565931.1 · 128,621–128,694 bp · −
rrn5 · OR565931.1 · 128,929–129,049 bp · −
rrn4.5 · OR565931.1 · 129,305–129,407 bp · −
rrn23 · OR565931.1 · 129,506–132,315 bp · −
trnA-UGC · OR565931.1 · 132,508–133,386 bp · −
trnI-GAU · OR565931.1 · 133,451–134,459 bp · −
rrn16 · OR565931.1 · 134,749–136,239 bp · −
trnV-GAC · OR565931.1 · 136,467–136,538 bp · −
ycf15 · OR565931.1 · 142,832–143,080 bp · −
ycf2 · OR565931.1 · 143,123–150,007 bp · −
psbK · OR565931.1 · 7,611–7,796 bp · +
psbI · OR565931.1 · 8,175–8,285 bp · +
trnG-UCC · OR565931.1 · 9,186–9,936 bp · +
trnR-UCU · OR565931.1 · 10,110–10,184 bp · +
trnC-GCA · OR565931.1 · 28,177–28,252 bp · +
petN · OR565931.1 · 29,089–29,178 bp · +
trnT-GGU · OR565931.1 · 31,562–31,632 bp · +
psbD · OR565931.1 · 32,883–33,944 bp · +
psbC · OR565931.1 · 33,892–35,313 bp · +
psbZ · OR565931.1 · 35,955–36,143 bp · +
trnG-GCC · OR565931.1 · 36,368–36,438 bp · +
trnS-GGA · OR565931.1 · 44,721–44,807 bp · +
trnL-UAA · OR565931.1 · 46,847–47,420 bp · +
trnF-GAA · OR565931.1 · 47,712–47,784 bp · +
trnM-CAU · OR565931.1 · 51,931–52,002 bp · +
rbcL · OR565931.1 · 54,896–56,350 bp · +
accD · OR565931.1 · 57,036–58,502 bp · +
psaI · OR565931.1 · 59,191–59,301 bp · +
ycf4 · OR565931.1 · 59,732–60,286 bp · +
cemA · OR565931.1 · 60,847–61,536 bp · +
petA · OR565931.1 · 61,753–62,715 bp · +
petL · OR565931.1 · 65,480–65,575 bp · +
petG · OR565931.1 · 65,750–65,863 bp · +
psaJ · OR565931.1 · 66,580–66,714 bp · +
rpl33 · OR565931.1 · 67,186–67,386 bp · +
rps18 · OR565931.1 · 67,533–67,838 bp · +
rps12 · OR565931.1 · 138,155–138,948 bp · +
psbB · OR565931.1 · 71,713–73,239 bp · +
psbT · OR565931.1 · 73,432–73,539 bp · +
psbH · OR565931.1 · 73,835–74,056 bp · +
petB · OR565931.1 · 74,171–75,551 bp · +
petD · OR565931.1 · 75,746–76,967 bp · +
ycf2 · OR565931.1 · 85,501–92,385 bp · +
ycf15 · OR565931.1 · 92,428–92,676 bp · +
trnV-GAC · OR565931.1 · 98,970–99,041 bp · +
rrn16 · OR565931.1 · 99,269–100,759 bp · +
trnI-GAU · OR565931.1 · 101,049–102,057 bp · +
trnA-UGC · OR565931.1 · 102,122–103,000 bp · +
rrn23 · OR565931.1 · 103,193–106,002 bp · +
rrn4.5 · OR565931.1 · 106,101–106,203 bp · +
rrn5 · OR565931.1 · 106,459–106,579 bp · +
trnR-ACG · OR565931.1 · 106,814–106,887 bp · +
rpl32 · OR565931.1 · 111,636–111,812 bp · +
trnL-UAG · OR565931.1 · 112,536–112,615 bp · +
ccsA · OR565931.1 · 112,700–113,671 bp · +
trnN-GUU · OR565931.1 · 127,983–128,054 bp · +
rps7 · OR565931.1 · 139,002–139,469 bp · +
ndhB · OR565931.1 · 139,744–141,955 bp · +
trnL-CAA · OR565931.1 · 142,491–142,571 bp · +
trnI-CAU · OR565931.1 · 150,096–150,169 bp · +
rpl23 · OR565931.1 · 150,335–150,616 bp · +
rpl2 · OR565931.1 · 150,635–152,126 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Paraphlomis foliata subsp. montigena
ANNOTATED PLASTOME
OR565931.1
152,219 bp · 132 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38055 76110 114164 152219 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
133 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 2 76 75 Locate
psbA gene − 307 1365 1059 Locate
trnK-UUU gene − 1598 4181 2584 Locate
matK gene − 1897 3432 1536 Locate
rps16 gene − 5109 6254 1146 Locate
trnQ-UUG gene − 7203 7274 72 Locate
psbK gene + 7611 7796 186 Locate
psbI gene + 8175 8285 111 Locate
trnS-GCU gene − 8408 8495 88 Locate
trnG-UCC gene + 9186 9936 751 Locate
trnR-UCU gene + 10110 10184 75 Locate
atpA gene − 10281 11804 1524 Locate
atpF gene − 11892 13112 1221 Locate
atpH gene − 13478 13723 246 Locate
atpI gene − 14759 15502 744 Locate
rps2 gene − 15733 16443 711 Locate
rpoC2 gene − 16664 20851 4188 Locate
rpoC1 gene − 21006 23836 2831 Locate
rpoB gene − 23863 27075 3213 Locate
trnC-GCA gene + 28177 28252 76 Locate
petN gene + 29089 29178 90 Locate
psbM gene − 29971 30075 105 Locate
trnD-GUC gene − 30599 30672 74 Locate
trnY-GUA gene − 30787 30870 84 Locate
trnE-UUC gene − 30930 30999 70 Locate
trnT-GGU gene + 31562 31632 71 Locate
psbD gene + 32883 33944 1062 Locate
psbC gene + 33892 35313 1422 Locate
trnS-UGA gene − 35546 35638 93 Locate
psbZ gene + 35955 36143 189 Locate
trnG-GCC gene + 36368 36438 71 Locate
trnfM-CAU gene − 36588 36661 74 Locate
rps14 gene − 36811 37113 303 Locate
psaB gene − 37241 39445 2205 Locate
psaA gene − 39471 41723 2253 Locate
ycf3 gene − 42451 44404 1954 Locate
trnS-GGA gene + 44721 44807 87 Locate
rps4 gene − 45105 45710 606 Locate
trnT-UGU gene − 46101 46173 73 Locate
trnL-UAA gene + 46847 47420 574 Locate
trnF-GAA gene + 47712 47784 73 Locate
ndhJ gene − 48453 48947 495 Locate
ndhK gene − 49030 49707 678 Locate
ndhC gene − 49761 50123 363 Locate
trnV-UAC gene − 51089 51741 653 Locate
trnM-CAU gene + 51931 52002 72 Locate
atpE gene − 52220 52621 402 Locate
atpB gene − 52618 54114 1497 Locate
rbcL gene + 54896 56350 1455 Locate
accD gene + 57036 58502 1467 Locate
psaI gene + 59191 59301 111 Locate
ycf4 gene + 59732 60286 555 Locate
cemA gene + 60847 61536 690 Locate
petA gene + 61753 62715 963 Locate
psbJ gene − 63762 63884 123 Locate
psbL gene − 64022 64138 117 Locate
psbF gene − 64162 64281 120 Locate
psbE gene − 64296 64547 252 Locate
petL gene + 65480 65575 96 Locate
petG gene + 65750 65863 114 Locate
trnW-CCA gene − 65989 66062 74 Locate
trnP-UGG gene − 66232 66305 74 Locate
psaJ gene + 66580 66714 135 Locate
rpl33 gene + 67186 67386 201 Locate
rps18 gene + 67533 67838 306 Locate
rpl20 gene − 68018 68404 387 Locate
rps12 gene − 69171 69284 114 Locate
clpP gene − 69411 71275 1865 Locate
psbB gene + 71713 73239 1527 Locate
psbT gene + 73432 73539 108 Locate
psbN gene − 73600 73731 132 Locate
psbH gene + 73835 74056 222 Locate
petB gene + 74171 75551 1381 Locate
petD gene + 75746 76967 1222 Locate
rpoA gene − 77130 78143 1014 Locate
rps11 gene − 78215 78670 456 Locate
rpl36 gene − 78758 78871 114 Locate
infA gene − 78967 79200 234 Locate
rps8 gene − 79329 79742 414 Locate
rpl14 gene − 79933 80301 369 Locate
rpl16 gene − 80428 81734 1307 Locate
rps3 gene − 81881 82543 663 Locate
rpl22 gene − 82528 82992 465 Locate
rps19 gene − 83052 83330 279 Locate
rpl2 gene − 83382 84873 1492 Locate
rpl23 gene − 84892 85173 282 Locate
trnI-CAU gene − 85339 85412 74 Locate
ycf2 gene + 85501 92385 6885 Locate
ycf15 gene + 92428 92676 249 Locate
trnL-CAA gene − 92937 93017 81 Locate
ndhB gene − 93553 95764 2212 Locate
rps7 gene − 96039 96506 468 Locate
rps12 gene − 96560 97353 794 Locate
trnV-GAC gene + 98970 99041 72 Locate
rrn16 gene + 99269 100759 1491 Locate
trnI-GAU gene + 101049 102057 1009 Locate
trnA-UGC gene + 102122 103000 879 Locate
rrn23 gene + 103193 106002 2810 Locate
rrn4.5 gene + 106101 106203 103 Locate
rrn5 gene + 106459 106579 121 Locate
trnR-ACG gene + 106814 106887 74 Locate
trnN-GUU gene − 107454 107525 72 Locate
ndhF gene − 108915 111131 2217 Locate
rpl32 gene + 111636 111812 177 Locate
trnL-UAG gene + 112536 112615 80 Locate
ccsA gene + 112700 113671 972 Locate
ndhD gene − 113854 115374 1521 Locate
psaC gene − 115473 115718 246 Locate
ndhE gene − 115981 116286 306 Locate
ndhG gene − 116508 117038 531 Locate
ndhI gene − 117417 117923 507 Locate
ndhA gene − 118010 120168 2159 Locate
ndhH gene − 120170 121351 1182 Locate
rps15 gene − 121464 121796 333 Locate
ycf1 gene − 122114 127657 5544 Locate
trnN-GUU gene + 127983 128054 72 Locate
trnR-ACG gene − 128621 128694 74 Locate
rrn5 gene − 128929 129049 121 Locate
rrn4.5 gene − 129305 129407 103 Locate
rrn23 gene − 129506 132315 2810 Locate
trnA-UGC gene − 132508 133386 879 Locate
trnI-GAU gene − 133451 134459 1009 Locate
rrn16 gene − 134749 136239 1491 Locate
trnV-GAC gene − 136467 136538 72 Locate
rps12 gene + 138155 138948 794 Locate
rps7 gene + 139002 139469 468 Locate
ndhB gene + 139744 141955 2212 Locate
trnL-CAA gene + 142491 142571 81 Locate
ycf15 gene − 142832 143080 249 Locate
ycf2 gene − 143123 150007 6885 Locate
trnI-CAU gene + 150096 150169 74 Locate
rpl23 gene + 150335 150616 282 Locate
rpl2 gene + 150635 152126 1492 Locate
Status Available
Accession OR565931.1
Length 152,219 bp
GC content 38.4%
Annotated genes 132
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 14 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources