Paraphlomis formosana chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · OR565953.1 · 2–76 bp · −
psbA · OR565953.1 · 307–1,365 bp · −
trnK-UUU · OR565953.1 · 1,598–4,181 bp · −
matK · OR565953.1 · 1,897–3,432 bp · −
rps16 · OR565953.1 · 5,109–6,254 bp · −
trnQ-UUG · OR565953.1 · 7,202–7,273 bp · −
trnS-GCU · OR565953.1 · 8,407–8,494 bp · −
atpA · OR565953.1 · 10,281–11,804 bp · −
atpF · OR565953.1 · 11,892–13,112 bp · −
atpH · OR565953.1 · 13,478–13,723 bp · −
atpI · OR565953.1 · 14,759–15,502 bp · −
rps2 · OR565953.1 · 15,733–16,443 bp · −
rpoC2 · OR565953.1 · 16,664–20,851 bp · −
rpoC1 · OR565953.1 · 21,006–23,836 bp · −
rpoB · OR565953.1 · 23,863–27,075 bp · −
psbM · OR565953.1 · 29,966–30,070 bp · −
trnD-GUC · OR565953.1 · 30,594–30,667 bp · −
trnY-GUA · OR565953.1 · 30,782–30,865 bp · −
trnE-UUC · OR565953.1 · 30,925–30,994 bp · −
trnS-UGA · OR565953.1 · 35,541–35,633 bp · −
trnfM-CAU · OR565953.1 · 36,592–36,665 bp · −
rps14 · OR565953.1 · 36,815–37,117 bp · −
psaB · OR565953.1 · 37,245–39,449 bp · −
psaA · OR565953.1 · 39,475–41,727 bp · −
ycf3 · OR565953.1 · 42,455–44,408 bp · −
rps4 · OR565953.1 · 45,109–45,714 bp · −
trnT-UGU · OR565953.1 · 46,105–46,177 bp · −
ndhJ · OR565953.1 · 48,457–48,951 bp · −
ndhK · OR565953.1 · 49,034–49,711 bp · −
ndhC · OR565953.1 · 49,765–50,127 bp · −
trnV-UAC · OR565953.1 · 51,093–51,745 bp · −
atpE · OR565953.1 · 52,224–52,625 bp · −
atpB · OR565953.1 · 52,622–54,112 bp · −
psbJ · OR565953.1 · 63,771–63,893 bp · −
psbL · OR565953.1 · 64,031–64,147 bp · −
psbF · OR565953.1 · 64,171–64,290 bp · −
psbE · OR565953.1 · 64,305–64,556 bp · −
trnW-CCA · OR565953.1 · 65,997–66,070 bp · −
trnP-UGG · OR565953.1 · 66,240–66,313 bp · −
rpl20 · OR565953.1 · 68,025–68,411 bp · −
rps12 · OR565953.1 · 69,178–69,291 bp · −
rps12 · OR565953.1 · 96,537–97,330 bp · −
clpP · OR565953.1 · 69,418–71,283 bp · −
psbN · OR565953.1 · 73,602–73,733 bp · −
rpoA · OR565953.1 · 77,131–78,144 bp · −
rps11 · OR565953.1 · 78,216–78,647 bp · −
rpl36 · OR565953.1 · 78,735–78,848 bp · −
infA · OR565953.1 · 78,944–79,177 bp · −
rps8 · OR565953.1 · 79,306–79,719 bp · −
rpl14 · OR565953.1 · 79,910–80,278 bp · −
rpl16 · OR565953.1 · 80,405–81,711 bp · −
rps3 · OR565953.1 · 81,858–82,520 bp · −
rpl22 · OR565953.1 · 82,505–82,969 bp · −
rps19 · OR565953.1 · 83,029–83,307 bp · −
rpl2 · OR565953.1 · 83,359–84,850 bp · −
rpl23 · OR565953.1 · 84,869–85,150 bp · −
trnI-CAU · OR565953.1 · 85,316–85,389 bp · −
trnL-CAA · OR565953.1 · 92,914–92,994 bp · −
ndhB · OR565953.1 · 93,530–95,741 bp · −
rps7 · OR565953.1 · 96,016–96,483 bp · −
trnN-GUU · OR565953.1 · 107,431–107,502 bp · −
ndhF · OR565953.1 · 108,892–111,108 bp · −
ndhD · OR565953.1 · 113,831–115,351 bp · −
psaC · OR565953.1 · 115,452–115,697 bp · −
ndhE · OR565953.1 · 115,960–116,265 bp · −
ndhG · OR565953.1 · 116,487–117,017 bp · −
ndhI · OR565953.1 · 117,396–117,902 bp · −
ndhA · OR565953.1 · 117,989–120,147 bp · −
ndhH · OR565953.1 · 120,149–121,330 bp · −
rps15 · OR565953.1 · 121,431–121,766 bp · −
ycf1 · OR565953.1 · 122,084–127,636 bp · −
trnR-ACG · OR565953.1 · 128,600–128,673 bp · −
rrn5 · OR565953.1 · 128,908–129,028 bp · −
rrn4.5 · OR565953.1 · 129,284–129,386 bp · −
rrn23 · OR565953.1 · 129,485–132,294 bp · −
trnA-UGC · OR565953.1 · 132,487–133,365 bp · −
trnI-GAU · OR565953.1 · 133,430–134,438 bp · −
rrn16 · OR565953.1 · 134,728–136,218 bp · −
trnV-GAC · OR565953.1 · 136,446–136,517 bp · −
ycf15 · OR565953.1 · 142,811–143,059 bp · −
ycf2 · OR565953.1 · 143,102–149,986 bp · −
psbK · OR565953.1 · 7,610–7,795 bp · +
psbI · OR565953.1 · 8,174–8,284 bp · +
trnG-UCC · OR565953.1 · 9,186–9,936 bp · +
trnR-UCU · OR565953.1 · 10,113–10,184 bp · +
trnC-GCA · OR565953.1 · 28,177–28,252 bp · +
petN · OR565953.1 · 29,089–29,178 bp · +
trnT-GGU · OR565953.1 · 31,557–31,627 bp · +
psbD · OR565953.1 · 32,878–33,939 bp · +
psbC · OR565953.1 · 33,887–35,308 bp · +
psbZ · OR565953.1 · 35,959–36,147 bp · +
trnG-GCC · OR565953.1 · 36,372–36,442 bp · +
trnS-GGA · OR565953.1 · 44,725–44,811 bp · +
trnL-UAA · OR565953.1 · 46,851–47,424 bp · +
trnF-GAA · OR565953.1 · 47,716–47,788 bp · +
trnM-CAU · OR565953.1 · 51,935–52,006 bp · +
rbcL · OR565953.1 · 54,900–56,354 bp · +
accD · OR565953.1 · 57,040–58,506 bp · +
psaI · OR565953.1 · 59,195–59,305 bp · +
ycf4 · OR565953.1 · 59,741–60,295 bp · +
cemA · OR565953.1 · 60,856–61,545 bp · +
petA · OR565953.1 · 61,762–62,724 bp · +
petL · OR565953.1 · 65,488–65,583 bp · +
petG · OR565953.1 · 65,758–65,871 bp · +
psaJ · OR565953.1 · 66,588–66,722 bp · +
rpl33 · OR565953.1 · 67,193–67,393 bp · +
rps18 · OR565953.1 · 67,540–67,845 bp · +
rps12 · OR565953.1 · 138,134–138,927 bp · +
psbB · OR565953.1 · 71,721–73,247 bp · +
psbT · OR565953.1 · 73,434–73,541 bp · +
psbH · OR565953.1 · 73,837–74,058 bp · +
petB · OR565953.1 · 74,173–75,552 bp · +
petD · OR565953.1 · 75,747–76,968 bp · +
ycf2 · OR565953.1 · 85,478–92,362 bp · +
ycf15 · OR565953.1 · 92,405–92,653 bp · +
trnV-GAC · OR565953.1 · 98,947–99,018 bp · +
rrn16 · OR565953.1 · 99,246–100,736 bp · +
trnI-GAU · OR565953.1 · 101,026–102,034 bp · +
trnA-UGC · OR565953.1 · 102,099–102,977 bp · +
rrn23 · OR565953.1 · 103,170–105,979 bp · +
rrn4.5 · OR565953.1 · 106,078–106,180 bp · +
rrn5 · OR565953.1 · 106,436–106,556 bp · +
trnR-ACG · OR565953.1 · 106,791–106,864 bp · +
rpl32 · OR565953.1 · 111,613–111,789 bp · +
trnL-UAG · OR565953.1 · 112,513–112,592 bp · +
ccsA · OR565953.1 · 112,677–113,648 bp · +
trnN-GUU · OR565953.1 · 127,962–128,033 bp · +
rps7 · OR565953.1 · 138,981–139,448 bp · +
ndhB · OR565953.1 · 139,723–141,934 bp · +
trnL-CAA · OR565953.1 · 142,470–142,550 bp · +
trnI-CAU · OR565953.1 · 150,075–150,148 bp · +
rpl23 · OR565953.1 · 150,314–150,595 bp · +
rpl2 · OR565953.1 · 150,614–152,105 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Paraphlomis formosana
ANNOTATED PLASTOME
OR565953.1
152,198 bp · 132 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38050 76099 114148 152198 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
133 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 2 76 75 Locate
psbA gene − 307 1365 1059 Locate
trnK-UUU gene − 1598 4181 2584 Locate
matK gene − 1897 3432 1536 Locate
rps16 gene − 5109 6254 1146 Locate
trnQ-UUG gene − 7202 7273 72 Locate
psbK gene + 7610 7795 186 Locate
psbI gene + 8174 8284 111 Locate
trnS-GCU gene − 8407 8494 88 Locate
trnG-UCC gene + 9186 9936 751 Locate
trnR-UCU gene + 10113 10184 72 Locate
atpA gene − 10281 11804 1524 Locate
atpF gene − 11892 13112 1221 Locate
atpH gene − 13478 13723 246 Locate
atpI gene − 14759 15502 744 Locate
rps2 gene − 15733 16443 711 Locate
rpoC2 gene − 16664 20851 4188 Locate
rpoC1 gene − 21006 23836 2831 Locate
rpoB gene − 23863 27075 3213 Locate
trnC-GCA gene + 28177 28252 76 Locate
petN gene + 29089 29178 90 Locate
psbM gene − 29966 30070 105 Locate
trnD-GUC gene − 30594 30667 74 Locate
trnY-GUA gene − 30782 30865 84 Locate
trnE-UUC gene − 30925 30994 70 Locate
trnT-GGU gene + 31557 31627 71 Locate
psbD gene + 32878 33939 1062 Locate
psbC gene + 33887 35308 1422 Locate
trnS-UGA gene − 35541 35633 93 Locate
psbZ gene + 35959 36147 189 Locate
trnG-GCC gene + 36372 36442 71 Locate
trnfM-CAU gene − 36592 36665 74 Locate
rps14 gene − 36815 37117 303 Locate
psaB gene − 37245 39449 2205 Locate
psaA gene − 39475 41727 2253 Locate
ycf3 gene − 42455 44408 1954 Locate
trnS-GGA gene + 44725 44811 87 Locate
rps4 gene − 45109 45714 606 Locate
trnT-UGU gene − 46105 46177 73 Locate
trnL-UAA gene + 46851 47424 574 Locate
trnF-GAA gene + 47716 47788 73 Locate
ndhJ gene − 48457 48951 495 Locate
ndhK gene − 49034 49711 678 Locate
ndhC gene − 49765 50127 363 Locate
trnV-UAC gene − 51093 51745 653 Locate
trnM-CAU gene + 51935 52006 72 Locate
atpE gene − 52224 52625 402 Locate
atpB gene − 52622 54112 1491 Locate
rbcL gene + 54900 56354 1455 Locate
accD gene + 57040 58506 1467 Locate
psaI gene + 59195 59305 111 Locate
ycf4 gene + 59741 60295 555 Locate
cemA gene + 60856 61545 690 Locate
petA gene + 61762 62724 963 Locate
psbJ gene − 63771 63893 123 Locate
psbL gene − 64031 64147 117 Locate
psbF gene − 64171 64290 120 Locate
psbE gene − 64305 64556 252 Locate
petL gene + 65488 65583 96 Locate
petG gene + 65758 65871 114 Locate
trnW-CCA gene − 65997 66070 74 Locate
trnP-UGG gene − 66240 66313 74 Locate
psaJ gene + 66588 66722 135 Locate
rpl33 gene + 67193 67393 201 Locate
rps18 gene + 67540 67845 306 Locate
rpl20 gene − 68025 68411 387 Locate
rps12 gene − 69178 69291 114 Locate
clpP gene − 69418 71283 1866 Locate
psbB gene + 71721 73247 1527 Locate
psbT gene + 73434 73541 108 Locate
psbN gene − 73602 73733 132 Locate
psbH gene + 73837 74058 222 Locate
petB gene + 74173 75552 1380 Locate
petD gene + 75747 76968 1222 Locate
rpoA gene − 77131 78144 1014 Locate
rps11 gene − 78216 78647 432 Locate
rpl36 gene − 78735 78848 114 Locate
infA gene − 78944 79177 234 Locate
rps8 gene − 79306 79719 414 Locate
rpl14 gene − 79910 80278 369 Locate
rpl16 gene − 80405 81711 1307 Locate
rps3 gene − 81858 82520 663 Locate
rpl22 gene − 82505 82969 465 Locate
rps19 gene − 83029 83307 279 Locate
rpl2 gene − 83359 84850 1492 Locate
rpl23 gene − 84869 85150 282 Locate
trnI-CAU gene − 85316 85389 74 Locate
ycf2 gene + 85478 92362 6885 Locate
ycf15 gene + 92405 92653 249 Locate
trnL-CAA gene − 92914 92994 81 Locate
ndhB gene − 93530 95741 2212 Locate
rps7 gene − 96016 96483 468 Locate
rps12 gene − 96537 97330 794 Locate
trnV-GAC gene + 98947 99018 72 Locate
rrn16 gene + 99246 100736 1491 Locate
trnI-GAU gene + 101026 102034 1009 Locate
trnA-UGC gene + 102099 102977 879 Locate
rrn23 gene + 103170 105979 2810 Locate
rrn4.5 gene + 106078 106180 103 Locate
rrn5 gene + 106436 106556 121 Locate
trnR-ACG gene + 106791 106864 74 Locate
trnN-GUU gene − 107431 107502 72 Locate
ndhF gene − 108892 111108 2217 Locate
rpl32 gene + 111613 111789 177 Locate
trnL-UAG gene + 112513 112592 80 Locate
ccsA gene + 112677 113648 972 Locate
ndhD gene − 113831 115351 1521 Locate
psaC gene − 115452 115697 246 Locate
ndhE gene − 115960 116265 306 Locate
ndhG gene − 116487 117017 531 Locate
ndhI gene − 117396 117902 507 Locate
ndhA gene − 117989 120147 2159 Locate
ndhH gene − 120149 121330 1182 Locate
rps15 gene − 121431 121766 336 Locate
ycf1 gene − 122084 127636 5553 Locate
trnN-GUU gene + 127962 128033 72 Locate
trnR-ACG gene − 128600 128673 74 Locate
rrn5 gene − 128908 129028 121 Locate
rrn4.5 gene − 129284 129386 103 Locate
rrn23 gene − 129485 132294 2810 Locate
trnA-UGC gene − 132487 133365 879 Locate
trnI-GAU gene − 133430 134438 1009 Locate
rrn16 gene − 134728 136218 1491 Locate
trnV-GAC gene − 136446 136517 72 Locate
rps12 gene + 138134 138927 794 Locate
rps7 gene + 138981 139448 468 Locate
ndhB gene + 139723 141934 2212 Locate
trnL-CAA gene + 142470 142550 81 Locate
ycf15 gene − 142811 143059 249 Locate
ycf2 gene − 143102 149986 6885 Locate
trnI-CAU gene + 150075 150148 74 Locate
rpl23 gene + 150314 150595 282 Locate
rpl2 gene + 150614 152105 1492 Locate
Status Available
Accession OR565953.1
Length 152,198 bp
GC content 38.4%
Annotated genes 132
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 14 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources