Paraphlomis gracilis var. lutienensis chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · OR565930.1 · 2–76 bp · −
psbA · OR565930.1 · 308–1,366 bp · −
trnK-UUU · OR565930.1 · 1,599–4,188 bp · −
matK · OR565930.1 · 1,904–3,439 bp · −
rps16 · OR565930.1 · 5,116–6,256 bp · −
trnQ-UUG · OR565930.1 · 7,205–7,276 bp · −
trnS-GCU · OR565930.1 · 8,408–8,495 bp · −
atpA · OR565930.1 · 10,292–11,815 bp · −
atpF · OR565930.1 · 11,903–13,124 bp · −
atpH · OR565930.1 · 13,493–13,738 bp · −
atpI · OR565930.1 · 14,762–15,505 bp · −
rps2 · OR565930.1 · 15,736–16,446 bp · −
rpoC2 · OR565930.1 · 16,668–20,855 bp · −
rpoC1 · OR565930.1 · 21,010–23,841 bp · −
rpoB · OR565930.1 · 23,868–27,080 bp · −
psbM · OR565930.1 · 29,976–30,080 bp · −
trnD-GUC · OR565930.1 · 30,604–30,677 bp · −
trnY-GUA · OR565930.1 · 30,792–30,875 bp · −
trnE-UUC · OR565930.1 · 30,935–31,004 bp · −
trnS-UGA · OR565930.1 · 35,550–35,642 bp · −
trnfM-CAU · OR565930.1 · 36,605–36,678 bp · −
rps14 · OR565930.1 · 36,828–37,130 bp · −
psaB · OR565930.1 · 37,258–39,462 bp · −
psaA · OR565930.1 · 39,488–41,740 bp · −
ycf3 · OR565930.1 · 42,468–44,425 bp · −
rps4 · OR565930.1 · 45,148–45,753 bp · −
trnT-UGU · OR565930.1 · 46,146–46,218 bp · −
ndhJ · OR565930.1 · 48,497–48,991 bp · −
ndhK · OR565930.1 · 49,074–49,751 bp · −
ndhC · OR565930.1 · 49,805–50,167 bp · −
trnV-UAC · OR565930.1 · 51,133–51,779 bp · −
atpE · OR565930.1 · 52,258–52,659 bp · −
atpB · OR565930.1 · 52,656–54,152 bp · −
psbJ · OR565930.1 · 63,825–63,947 bp · −
psbL · OR565930.1 · 64,085–64,201 bp · −
psbF · OR565930.1 · 64,225–64,344 bp · −
psbE · OR565930.1 · 64,359–64,610 bp · −
trnW-CCA · OR565930.1 · 66,048–66,121 bp · −
trnP-UGG · OR565930.1 · 66,291–66,364 bp · −
rpl20 · OR565930.1 · 68,071–68,457 bp · −
rps12 · OR565930.1 · 69,224–69,337 bp · −
rps12 · OR565930.1 · 96,582–97,375 bp · −
clpP · OR565930.1 · 69,464–71,330 bp · −
psbN · OR565930.1 · 73,656–73,787 bp · −
rpoA · OR565930.1 · 77,194–78,207 bp · −
rps11 · OR565930.1 · 78,279–78,710 bp · −
rpl36 · OR565930.1 · 78,798–78,911 bp · −
infA · OR565930.1 · 79,007–79,240 bp · −
rps8 · OR565930.1 · 79,364–79,777 bp · −
rpl14 · OR565930.1 · 79,968–80,336 bp · −
rpl16 · OR565930.1 · 80,463–81,769 bp · −
rps3 · OR565930.1 · 81,916–82,578 bp · −
rpl22 · OR565930.1 · 82,563–83,027 bp · −
rps19 · OR565930.1 · 83,087–83,365 bp · −
rpl2 · OR565930.1 · 83,418–84,909 bp · −
rpl23 · OR565930.1 · 84,928–85,209 bp · −
trnI-CAU · OR565930.1 · 85,375–85,448 bp · −
trnL-CAA · OR565930.1 · 92,955–93,035 bp · −
ndhB · OR565930.1 · 93,575–95,786 bp · −
rps7 · OR565930.1 · 96,061–96,528 bp · −
trnN-GUU · OR565930.1 · 107,476–107,547 bp · −
ndhF · OR565930.1 · 108,937–111,159 bp · −
ndhD · OR565930.1 · 113,881–115,401 bp · −
psaC · OR565930.1 · 115,500–115,745 bp · −
ndhE · OR565930.1 · 116,008–116,313 bp · −
ndhG · OR565930.1 · 116,535–117,065 bp · −
ndhI · OR565930.1 · 117,444–117,941 bp · −
ndhA · OR565930.1 · 118,028–120,187 bp · −
ndhH · OR565930.1 · 120,189–121,370 bp · −
rps15 · OR565930.1 · 121,471–121,806 bp · −
ycf1 · OR565930.1 · 122,124–127,685 bp · −
trnR-ACG · OR565930.1 · 128,649–128,722 bp · −
rrn5 · OR565930.1 · 128,957–129,077 bp · −
rrn4.5 · OR565930.1 · 129,333–129,435 bp · −
rrn23 · OR565930.1 · 129,534–132,343 bp · −
trnA-UGC · OR565930.1 · 132,536–133,414 bp · −
trnI-GAU · OR565930.1 · 133,479–134,487 bp · −
rrn16 · OR565930.1 · 134,777–136,267 bp · −
trnV-GAC · OR565930.1 · 136,495–136,566 bp · −
ycf15 · OR565930.1 · 142,864–143,127 bp · −
ycf2 · OR565930.1 · 143,155–150,021 bp · −
psbK · OR565930.1 · 7,613–7,798 bp · +
psbI · OR565930.1 · 8,174–8,284 bp · +
trnG-UCC · OR565930.1 · 9,188–9,947 bp · +
trnR-UCU · OR565930.1 · 10,121–10,195 bp · +
trnC-GCA · OR565930.1 · 28,182–28,262 bp · +
petN · OR565930.1 · 29,088–29,183 bp · +
trnT-GGU · OR565930.1 · 31,567–31,637 bp · +
psbD · OR565930.1 · 32,889–33,950 bp · +
psbC · OR565930.1 · 33,898–35,319 bp · +
psbZ · OR565930.1 · 35,967–36,155 bp · +
trnG-GCC · OR565930.1 · 36,385–36,455 bp · +
trnS-GGA · OR565930.1 · 44,763–44,849 bp · +
trnL-UAA · OR565930.1 · 46,897–47,470 bp · +
trnF-GAA · OR565930.1 · 47,762–47,834 bp · +
trnM-CAU · OR565930.1 · 51,968–52,040 bp · +
rbcL · OR565930.1 · 54,956–56,401 bp · +
accD · OR565930.1 · 57,091–58,557 bp · +
psaI · OR565930.1 · 59,244–59,354 bp · +
ycf4 · OR565930.1 · 59,790–60,344 bp · +
cemA · OR565930.1 · 60,912–61,601 bp · +
petA · OR565930.1 · 61,818–62,780 bp · +
petL · OR565930.1 · 65,539–65,634 bp · +
petG · OR565930.1 · 65,809–65,922 bp · +
psaJ · OR565930.1 · 66,639–66,773 bp · +
rpl33 · OR565930.1 · 67,239–67,439 bp · +
rps18 · OR565930.1 · 67,586–67,891 bp · +
rps12 · OR565930.1 · 138,183–138,976 bp · +
psbB · OR565930.1 · 71,768–73,294 bp · +
psbT · OR565930.1 · 73,488–73,595 bp · +
psbH · OR565930.1 · 73,891–74,112 bp · +
petB · OR565930.1 · 74,237–75,615 bp · +
petD · OR565930.1 · 75,810–77,031 bp · +
ycf2 · OR565930.1 · 85,537–92,403 bp · +
ycf15 · OR565930.1 · 92,446–92,694 bp · +
trnV-GAC · OR565930.1 · 98,992–99,063 bp · +
rrn16 · OR565930.1 · 99,291–100,781 bp · +
trnI-GAU · OR565930.1 · 101,071–102,079 bp · +
trnA-UGC · OR565930.1 · 102,144–103,022 bp · +
rrn23 · OR565930.1 · 103,215–106,024 bp · +
rrn4.5 · OR565930.1 · 106,123–106,225 bp · +
rrn5 · OR565930.1 · 106,481–106,601 bp · +
trnR-ACG · OR565930.1 · 106,836–106,909 bp · +
rpl32 · OR565930.1 · 111,664–111,840 bp · +
trnL-UAG · OR565930.1 · 112,563–112,642 bp · +
ccsA · OR565930.1 · 112,727–113,698 bp · +
trnN-GUU · OR565930.1 · 128,011–128,082 bp · +
rps7 · OR565930.1 · 139,030–139,497 bp · +
ndhB · OR565930.1 · 139,772–141,983 bp · +
trnL-CAA · OR565930.1 · 142,523–142,603 bp · +
trnI-CAU · OR565930.1 · 150,110–150,183 bp · +
rpl23 · OR565930.1 · 150,349–150,630 bp · +
rpl2 · OR565930.1 · 150,649–152,140 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Paraphlomis gracilis var. lutienensis
ANNOTATED PLASTOME
OR565930.1
152,234 bp · 132 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38058 76117 114176 152234 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
133 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 2 76 75 Locate
psbA gene − 308 1366 1059 Locate
trnK-UUU gene − 1599 4188 2590 Locate
matK gene − 1904 3439 1536 Locate
rps16 gene − 5116 6256 1141 Locate
trnQ-UUG gene − 7205 7276 72 Locate
psbK gene + 7613 7798 186 Locate
psbI gene + 8174 8284 111 Locate
trnS-GCU gene − 8408 8495 88 Locate
trnG-UCC gene + 9188 9947 760 Locate
trnR-UCU gene + 10121 10195 75 Locate
atpA gene − 10292 11815 1524 Locate
atpF gene − 11903 13124 1222 Locate
atpH gene − 13493 13738 246 Locate
atpI gene − 14762 15505 744 Locate
rps2 gene − 15736 16446 711 Locate
rpoC2 gene − 16668 20855 4188 Locate
rpoC1 gene − 21010 23841 2832 Locate
rpoB gene − 23868 27080 3213 Locate
trnC-GCA gene + 28182 28262 81 Locate
petN gene + 29088 29183 96 Locate
psbM gene − 29976 30080 105 Locate
trnD-GUC gene − 30604 30677 74 Locate
trnY-GUA gene − 30792 30875 84 Locate
trnE-UUC gene − 30935 31004 70 Locate
trnT-GGU gene + 31567 31637 71 Locate
psbD gene + 32889 33950 1062 Locate
psbC gene + 33898 35319 1422 Locate
trnS-UGA gene − 35550 35642 93 Locate
psbZ gene + 35967 36155 189 Locate
trnG-GCC gene + 36385 36455 71 Locate
trnfM-CAU gene − 36605 36678 74 Locate
rps14 gene − 36828 37130 303 Locate
psaB gene − 37258 39462 2205 Locate
psaA gene − 39488 41740 2253 Locate
ycf3 gene − 42468 44425 1958 Locate
trnS-GGA gene + 44763 44849 87 Locate
rps4 gene − 45148 45753 606 Locate
trnT-UGU gene − 46146 46218 73 Locate
trnL-UAA gene + 46897 47470 574 Locate
trnF-GAA gene + 47762 47834 73 Locate
ndhJ gene − 48497 48991 495 Locate
ndhK gene − 49074 49751 678 Locate
ndhC gene − 49805 50167 363 Locate
trnV-UAC gene − 51133 51779 647 Locate
trnM-CAU gene + 51968 52040 73 Locate
atpE gene − 52258 52659 402 Locate
atpB gene − 52656 54152 1497 Locate
rbcL gene + 54956 56401 1446 Locate
accD gene + 57091 58557 1467 Locate
psaI gene + 59244 59354 111 Locate
ycf4 gene + 59790 60344 555 Locate
cemA gene + 60912 61601 690 Locate
petA gene + 61818 62780 963 Locate
psbJ gene − 63825 63947 123 Locate
psbL gene − 64085 64201 117 Locate
psbF gene − 64225 64344 120 Locate
psbE gene − 64359 64610 252 Locate
petL gene + 65539 65634 96 Locate
petG gene + 65809 65922 114 Locate
trnW-CCA gene − 66048 66121 74 Locate
trnP-UGG gene − 66291 66364 74 Locate
psaJ gene + 66639 66773 135 Locate
rpl33 gene + 67239 67439 201 Locate
rps18 gene + 67586 67891 306 Locate
rpl20 gene − 68071 68457 387 Locate
rps12 gene − 69224 69337 114 Locate
clpP gene − 69464 71330 1867 Locate
psbB gene + 71768 73294 1527 Locate
psbT gene + 73488 73595 108 Locate
psbN gene − 73656 73787 132 Locate
psbH gene + 73891 74112 222 Locate
petB gene + 74237 75615 1379 Locate
petD gene + 75810 77031 1222 Locate
rpoA gene − 77194 78207 1014 Locate
rps11 gene − 78279 78710 432 Locate
rpl36 gene − 78798 78911 114 Locate
infA gene − 79007 79240 234 Locate
rps8 gene − 79364 79777 414 Locate
rpl14 gene − 79968 80336 369 Locate
rpl16 gene − 80463 81769 1307 Locate
rps3 gene − 81916 82578 663 Locate
rpl22 gene − 82563 83027 465 Locate
rps19 gene − 83087 83365 279 Locate
rpl2 gene − 83418 84909 1492 Locate
rpl23 gene − 84928 85209 282 Locate
trnI-CAU gene − 85375 85448 74 Locate
ycf2 gene + 85537 92403 6867 Locate
ycf15 gene + 92446 92694 249 Locate
trnL-CAA gene − 92955 93035 81 Locate
ndhB gene − 93575 95786 2212 Locate
rps7 gene − 96061 96528 468 Locate
rps12 gene − 96582 97375 794 Locate
trnV-GAC gene + 98992 99063 72 Locate
rrn16 gene + 99291 100781 1491 Locate
trnI-GAU gene + 101071 102079 1009 Locate
trnA-UGC gene + 102144 103022 879 Locate
rrn23 gene + 103215 106024 2810 Locate
rrn4.5 gene + 106123 106225 103 Locate
rrn5 gene + 106481 106601 121 Locate
trnR-ACG gene + 106836 106909 74 Locate
trnN-GUU gene − 107476 107547 72 Locate
ndhF gene − 108937 111159 2223 Locate
rpl32 gene + 111664 111840 177 Locate
trnL-UAG gene + 112563 112642 80 Locate
ccsA gene + 112727 113698 972 Locate
ndhD gene − 113881 115401 1521 Locate
psaC gene − 115500 115745 246 Locate
ndhE gene − 116008 116313 306 Locate
ndhG gene − 116535 117065 531 Locate
ndhI gene − 117444 117941 498 Locate
ndhA gene − 118028 120187 2160 Locate
ndhH gene − 120189 121370 1182 Locate
rps15 gene − 121471 121806 336 Locate
ycf1 gene − 122124 127685 5562 Locate
trnN-GUU gene + 128011 128082 72 Locate
trnR-ACG gene − 128649 128722 74 Locate
rrn5 gene − 128957 129077 121 Locate
rrn4.5 gene − 129333 129435 103 Locate
rrn23 gene − 129534 132343 2810 Locate
trnA-UGC gene − 132536 133414 879 Locate
trnI-GAU gene − 133479 134487 1009 Locate
rrn16 gene − 134777 136267 1491 Locate
trnV-GAC gene − 136495 136566 72 Locate
rps12 gene + 138183 138976 794 Locate
rps7 gene + 139030 139497 468 Locate
ndhB gene + 139772 141983 2212 Locate
trnL-CAA gene + 142523 142603 81 Locate
ycf15 gene − 142864 143127 264 Locate
ycf2 gene − 143155 150021 6867 Locate
trnI-CAU gene + 150110 150183 74 Locate
rpl23 gene + 150349 150630 282 Locate
rpl2 gene + 150649 152140 1492 Locate
Status Available
Accession OR565930.1
Length 152,234 bp
GC content 38.4%
Annotated genes 132
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 14 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources