Paraphlomis gracilis chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · OR565927.1 · 2–76 bp · −
psbA · OR565927.1 · 310–1,368 bp · −
trnK-UUU · OR565927.1 · 1,601–4,190 bp · −
matK · OR565927.1 · 1,906–3,441 bp · −
rps16 · OR565927.1 · 5,118–6,258 bp · −
trnQ-UUG · OR565927.1 · 7,221–7,293 bp · −
trnS-GCU · OR565927.1 · 8,424–8,511 bp · −
atpA · OR565927.1 · 10,308–11,831 bp · −
atpF · OR565927.1 · 11,919–13,140 bp · −
atpH · OR565927.1 · 13,508–13,753 bp · −
atpI · OR565927.1 · 14,753–15,496 bp · −
rps2 · OR565927.1 · 15,727–16,437 bp · −
rpoC2 · OR565927.1 · 16,658–20,845 bp · −
rpoC1 · OR565927.1 · 21,000–23,831 bp · −
rpoB · OR565927.1 · 23,858–27,070 bp · −
psbM · OR565927.1 · 29,961–30,065 bp · −
trnD-GUC · OR565927.1 · 30,589–30,662 bp · −
trnY-GUA · OR565927.1 · 30,777–30,860 bp · −
trnE-UUC · OR565927.1 · 30,920–30,992 bp · −
trnS-UGA · OR565927.1 · 35,533–35,625 bp · −
trnfM-CAU · OR565927.1 · 36,588–36,661 bp · −
rps14 · OR565927.1 · 36,811–37,113 bp · −
psaB · OR565927.1 · 37,241–39,445 bp · −
psaA · OR565927.1 · 39,471–41,723 bp · −
ycf3 · OR565927.1 · 42,451–44,409 bp · −
rps4 · OR565927.1 · 45,123–45,728 bp · −
trnT-UGU · OR565927.1 · 46,119–46,191 bp · −
ndhJ · OR565927.1 · 48,472–48,948 bp · −
ndhK · OR565927.1 · 49,049–49,726 bp · −
ndhC · OR565927.1 · 49,780–50,142 bp · −
trnV-UAC · OR565927.1 · 51,108–51,754 bp · −
atpE · OR565927.1 · 52,233–52,634 bp · −
atpB · OR565927.1 · 52,631–54,121 bp · −
psbJ · OR565927.1 · 63,812–63,934 bp · −
psbL · OR565927.1 · 64,072–64,188 bp · −
psbF · OR565927.1 · 64,212–64,331 bp · −
psbE · OR565927.1 · 64,346–64,597 bp · −
trnW-CCA · OR565927.1 · 66,035–66,108 bp · −
trnP-UGG · OR565927.1 · 66,278–66,351 bp · −
rpl20 · OR565927.1 · 68,066–68,452 bp · −
rps12 · OR565927.1 · 69,219–69,332 bp · −
rps12 · OR565927.1 · 96,568–97,361 bp · −
clpP · OR565927.1 · 69,459–71,323 bp · −
psbN · OR565927.1 · 73,641–73,772 bp · −
rpoA · OR565927.1 · 77,179–78,192 bp · −
rps11 · OR565927.1 · 78,264–78,695 bp · −
rpl36 · OR565927.1 · 78,783–78,896 bp · −
infA · OR565927.1 · 78,992–79,225 bp · −
rps8 · OR565927.1 · 79,350–79,763 bp · −
rpl14 · OR565927.1 · 79,954–80,322 bp · −
rpl16 · OR565927.1 · 80,449–81,755 bp · −
rps3 · OR565927.1 · 81,902–82,564 bp · −
rpl22 · OR565927.1 · 82,549–83,013 bp · −
rps19 · OR565927.1 · 83,073–83,351 bp · −
rpl2 · OR565927.1 · 83,404–84,895 bp · −
rpl23 · OR565927.1 · 84,914–85,195 bp · −
trnI-CAU · OR565927.1 · 85,361–85,434 bp · −
trnL-CAA · OR565927.1 · 92,941–93,021 bp · −
ndhB · OR565927.1 · 93,561–95,772 bp · −
rps7 · OR565927.1 · 96,047–96,514 bp · −
trnN-GUU · OR565927.1 · 107,462–107,533 bp · −
ndhF · OR565927.1 · 108,923–111,145 bp · −
ndhD · OR565927.1 · 113,869–115,389 bp · −
psaC · OR565927.1 · 115,489–115,734 bp · −
ndhE · OR565927.1 · 115,997–116,302 bp · −
ndhG · OR565927.1 · 116,524–117,054 bp · −
ndhI · OR565927.1 · 117,434–117,931 bp · −
ndhA · OR565927.1 · 118,018–120,177 bp · −
ndhH · OR565927.1 · 120,179–121,360 bp · −
rps15 · OR565927.1 · 121,461–121,796 bp · −
ycf1 · OR565927.1 · 122,114–127,666 bp · −
trnR-ACG · OR565927.1 · 128,631–128,703 bp · −
rrn5 · OR565927.1 · 128,938–129,058 bp · −
rrn4.5 · OR565927.1 · 129,314–129,416 bp · −
rrn23 · OR565927.1 · 129,515–132,324 bp · −
trnA-UGC · OR565927.1 · 132,517–133,395 bp · −
trnI-GAU · OR565927.1 · 133,460–134,468 bp · −
rrn16 · OR565927.1 · 134,758–136,248 bp · −
trnV-GAC · OR565927.1 · 136,476–136,547 bp · −
ycf15 · OR565927.1 · 142,845–143,093 bp · −
ycf2 · OR565927.1 · 143,136–150,002 bp · −
psbK · OR565927.1 · 7,630–7,815 bp · +
psbI · OR565927.1 · 8,191–8,301 bp · +
trnG-UCC · OR565927.1 · 9,204–9,963 bp · +
trnR-UCU · OR565927.1 · 10,140–10,211 bp · +
trnC-GCA · OR565927.1 · 28,172–28,252 bp · +
petN · OR565927.1 · 29,078–29,173 bp · +
trnT-GGU · OR565927.1 · 31,552–31,622 bp · +
psbD · OR565927.1 · 32,872–33,933 bp · +
psbC · OR565927.1 · 33,881–35,302 bp · +
psbZ · OR565927.1 · 35,950–36,138 bp · +
trnG-GCC · OR565927.1 · 36,368–36,438 bp · +
trnS-GGA · OR565927.1 · 44,739–44,825 bp · +
trnL-UAA · OR565927.1 · 46,872–47,445 bp · +
trnF-GAA · OR565927.1 · 47,737–47,809 bp · +
trnM-CAU · OR565927.1 · 51,943–52,015 bp · +
rbcL · OR565927.1 · 54,934–56,388 bp · +
accD · OR565927.1 · 57,078–58,544 bp · +
psaI · OR565927.1 · 59,231–59,341 bp · +
ycf4 · OR565927.1 · 59,777–60,331 bp · +
cemA · OR565927.1 · 60,899–61,588 bp · +
petA · OR565927.1 · 61,805–62,767 bp · +
petL · OR565927.1 · 65,526–65,621 bp · +
petG · OR565927.1 · 65,796–65,909 bp · +
psaJ · OR565927.1 · 66,626–66,760 bp · +
rpl33 · OR565927.1 · 67,234–67,434 bp · +
rps18 · OR565927.1 · 67,581–67,886 bp · +
rps12 · OR565927.1 · 138,164–138,957 bp · +
psbB · OR565927.1 · 71,761–73,287 bp · +
psbT · OR565927.1 · 73,473–73,580 bp · +
psbH · OR565927.1 · 73,876–74,097 bp · +
petB · OR565927.1 · 74,222–75,600 bp · +
petD · OR565927.1 · 75,795–77,016 bp · +
ycf2 · OR565927.1 · 85,523–92,389 bp · +
ycf15 · OR565927.1 · 92,432–92,680 bp · +
trnV-GAC · OR565927.1 · 98,978–99,049 bp · +
rrn16 · OR565927.1 · 99,277–100,767 bp · +
trnI-GAU · OR565927.1 · 101,057–102,065 bp · +
trnA-UGC · OR565927.1 · 102,130–103,008 bp · +
rrn23 · OR565927.1 · 103,201–106,010 bp · +
rrn4.5 · OR565927.1 · 106,109–106,211 bp · +
rrn5 · OR565927.1 · 106,467–106,587 bp · +
trnR-ACG · OR565927.1 · 106,822–106,894 bp · +
rpl32 · OR565927.1 · 111,650–111,826 bp · +
trnL-UAG · OR565927.1 · 112,550–112,629 bp · +
ccsA · OR565927.1 · 112,714–113,685 bp · +
trnN-GUU · OR565927.1 · 127,992–128,063 bp · +
rps7 · OR565927.1 · 139,011–139,478 bp · +
ndhB · OR565927.1 · 139,753–141,964 bp · +
trnL-CAA · OR565927.1 · 142,504–142,584 bp · +
trnI-CAU · OR565927.1 · 150,091–150,164 bp · +
rpl23 · OR565927.1 · 150,330–150,611 bp · +
rpl2 · OR565927.1 · 150,630–152,121 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Paraphlomis gracilis
ANNOTATED PLASTOME
OR565927.1
152,215 bp · 132 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38054 76108 114161 152215 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
133 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 2 76 75 Locate
psbA gene − 310 1368 1059 Locate
trnK-UUU gene − 1601 4190 2590 Locate
matK gene − 1906 3441 1536 Locate
rps16 gene − 5118 6258 1141 Locate
trnQ-UUG gene − 7221 7293 73 Locate
psbK gene + 7630 7815 186 Locate
psbI gene + 8191 8301 111 Locate
trnS-GCU gene − 8424 8511 88 Locate
trnG-UCC gene + 9204 9963 760 Locate
trnR-UCU gene + 10140 10211 72 Locate
atpA gene − 10308 11831 1524 Locate
atpF gene − 11919 13140 1222 Locate
atpH gene − 13508 13753 246 Locate
atpI gene − 14753 15496 744 Locate
rps2 gene − 15727 16437 711 Locate
rpoC2 gene − 16658 20845 4188 Locate
rpoC1 gene − 21000 23831 2832 Locate
rpoB gene − 23858 27070 3213 Locate
trnC-GCA gene + 28172 28252 81 Locate
petN gene + 29078 29173 96 Locate
psbM gene − 29961 30065 105 Locate
trnD-GUC gene − 30589 30662 74 Locate
trnY-GUA gene − 30777 30860 84 Locate
trnE-UUC gene − 30920 30992 73 Locate
trnT-GGU gene + 31552 31622 71 Locate
psbD gene + 32872 33933 1062 Locate
psbC gene + 33881 35302 1422 Locate
trnS-UGA gene − 35533 35625 93 Locate
psbZ gene + 35950 36138 189 Locate
trnG-GCC gene + 36368 36438 71 Locate
trnfM-CAU gene − 36588 36661 74 Locate
rps14 gene − 36811 37113 303 Locate
psaB gene − 37241 39445 2205 Locate
psaA gene − 39471 41723 2253 Locate
ycf3 gene − 42451 44409 1959 Locate
trnS-GGA gene + 44739 44825 87 Locate
rps4 gene − 45123 45728 606 Locate
trnT-UGU gene − 46119 46191 73 Locate
trnL-UAA gene + 46872 47445 574 Locate
trnF-GAA gene + 47737 47809 73 Locate
ndhJ gene − 48472 48948 477 Locate
ndhK gene − 49049 49726 678 Locate
ndhC gene − 49780 50142 363 Locate
trnV-UAC gene − 51108 51754 647 Locate
trnM-CAU gene + 51943 52015 73 Locate
atpE gene − 52233 52634 402 Locate
atpB gene − 52631 54121 1491 Locate
rbcL gene + 54934 56388 1455 Locate
accD gene + 57078 58544 1467 Locate
psaI gene + 59231 59341 111 Locate
ycf4 gene + 59777 60331 555 Locate
cemA gene + 60899 61588 690 Locate
petA gene + 61805 62767 963 Locate
psbJ gene − 63812 63934 123 Locate
psbL gene − 64072 64188 117 Locate
psbF gene − 64212 64331 120 Locate
psbE gene − 64346 64597 252 Locate
petL gene + 65526 65621 96 Locate
petG gene + 65796 65909 114 Locate
trnW-CCA gene − 66035 66108 74 Locate
trnP-UGG gene − 66278 66351 74 Locate
psaJ gene + 66626 66760 135 Locate
rpl33 gene + 67234 67434 201 Locate
rps18 gene + 67581 67886 306 Locate
rpl20 gene − 68066 68452 387 Locate
rps12 gene − 69219 69332 114 Locate
clpP gene − 69459 71323 1865 Locate
psbB gene + 71761 73287 1527 Locate
psbT gene + 73473 73580 108 Locate
psbN gene − 73641 73772 132 Locate
psbH gene + 73876 74097 222 Locate
petB gene + 74222 75600 1379 Locate
petD gene + 75795 77016 1222 Locate
rpoA gene − 77179 78192 1014 Locate
rps11 gene − 78264 78695 432 Locate
rpl36 gene − 78783 78896 114 Locate
infA gene − 78992 79225 234 Locate
rps8 gene − 79350 79763 414 Locate
rpl14 gene − 79954 80322 369 Locate
rpl16 gene − 80449 81755 1307 Locate
rps3 gene − 81902 82564 663 Locate
rpl22 gene − 82549 83013 465 Locate
rps19 gene − 83073 83351 279 Locate
rpl2 gene − 83404 84895 1492 Locate
rpl23 gene − 84914 85195 282 Locate
trnI-CAU gene − 85361 85434 74 Locate
ycf2 gene + 85523 92389 6867 Locate
ycf15 gene + 92432 92680 249 Locate
trnL-CAA gene − 92941 93021 81 Locate
ndhB gene − 93561 95772 2212 Locate
rps7 gene − 96047 96514 468 Locate
rps12 gene − 96568 97361 794 Locate
trnV-GAC gene + 98978 99049 72 Locate
rrn16 gene + 99277 100767 1491 Locate
trnI-GAU gene + 101057 102065 1009 Locate
trnA-UGC gene + 102130 103008 879 Locate
rrn23 gene + 103201 106010 2810 Locate
rrn4.5 gene + 106109 106211 103 Locate
rrn5 gene + 106467 106587 121 Locate
trnR-ACG gene + 106822 106894 73 Locate
trnN-GUU gene − 107462 107533 72 Locate
ndhF gene − 108923 111145 2223 Locate
rpl32 gene + 111650 111826 177 Locate
trnL-UAG gene + 112550 112629 80 Locate
ccsA gene + 112714 113685 972 Locate
ndhD gene − 113869 115389 1521 Locate
psaC gene − 115489 115734 246 Locate
ndhE gene − 115997 116302 306 Locate
ndhG gene − 116524 117054 531 Locate
ndhI gene − 117434 117931 498 Locate
ndhA gene − 118018 120177 2160 Locate
ndhH gene − 120179 121360 1182 Locate
rps15 gene − 121461 121796 336 Locate
ycf1 gene − 122114 127666 5553 Locate
trnN-GUU gene + 127992 128063 72 Locate
trnR-ACG gene − 128631 128703 73 Locate
rrn5 gene − 128938 129058 121 Locate
rrn4.5 gene − 129314 129416 103 Locate
rrn23 gene − 129515 132324 2810 Locate
trnA-UGC gene − 132517 133395 879 Locate
trnI-GAU gene − 133460 134468 1009 Locate
rrn16 gene − 134758 136248 1491 Locate
trnV-GAC gene − 136476 136547 72 Locate
rps12 gene + 138164 138957 794 Locate
rps7 gene + 139011 139478 468 Locate
ndhB gene + 139753 141964 2212 Locate
trnL-CAA gene + 142504 142584 81 Locate
ycf15 gene − 142845 143093 249 Locate
ycf2 gene − 143136 150002 6867 Locate
trnI-CAU gene + 150091 150164 74 Locate
rpl23 gene + 150330 150611 282 Locate
rpl2 gene + 150630 152121 1492 Locate
Status Available
Accession OR565927.1
Length 152,215 bp
GC content 38.4%
Annotated genes 132
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 14 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources