Paraphlomis hirsutissima chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · OR565958.1 · 2–76 bp · −
psbA · OR565958.1 · 308–1,366 bp · −
trnK-UUU · OR565958.1 · 1,599–4,188 bp · −
matK · OR565958.1 · 1,904–3,439 bp · −
rps16 · OR565958.1 · 5,115–6,255 bp · −
trnQ-UUG · OR565958.1 · 7,203–7,274 bp · −
trnS-GCU · OR565958.1 · 8,414–8,501 bp · −
atpA · OR565958.1 · 10,305–11,828 bp · −
atpF · OR565958.1 · 11,916–13,138 bp · −
atpH · OR565958.1 · 13,505–13,750 bp · −
atpI · OR565958.1 · 14,750–15,493 bp · −
rps2 · OR565958.1 · 15,724–16,434 bp · −
rpoC2 · OR565958.1 · 16,734–20,843 bp · −
rpoC1 · OR565958.1 · 20,998–23,829 bp · −
rpoB · OR565958.1 · 23,856–27,068 bp · −
psbM · OR565958.1 · 29,947–30,051 bp · −
trnD-GUC · OR565958.1 · 30,575–30,648 bp · −
trnY-GUA · OR565958.1 · 30,763–30,846 bp · −
trnE-UUC · OR565958.1 · 30,906–30,975 bp · −
trnS-UGA · OR565958.1 · 35,521–35,613 bp · −
trnfM-CAU · OR565958.1 · 36,576–36,649 bp · −
rps14 · OR565958.1 · 36,799–37,101 bp · −
psaB · OR565958.1 · 37,229–39,433 bp · −
psaA · OR565958.1 · 39,459–41,711 bp · −
ycf3 · OR565958.1 · 42,447–44,402 bp · −
rps4 · OR565958.1 · 45,143–45,748 bp · −
trnT-UGU · OR565958.1 · 46,139–46,211 bp · −
ndhJ · OR565958.1 · 48,489–48,965 bp · −
ndhK · OR565958.1 · 49,066–49,743 bp · −
ndhC · OR565958.1 · 49,797–50,159 bp · −
trnV-UAC · OR565958.1 · 51,125–51,771 bp · −
atpE · OR565958.1 · 52,250–52,651 bp · −
atpB · OR565958.1 · 52,648–54,138 bp · −
psbJ · OR565958.1 · 63,826–63,948 bp · −
psbL · OR565958.1 · 64,086–64,202 bp · −
psbF · OR565958.1 · 64,226–64,345 bp · −
psbE · OR565958.1 · 64,360–64,611 bp · −
trnW-CCA · OR565958.1 · 66,048–66,121 bp · −
trnP-UGG · OR565958.1 · 66,291–66,364 bp · −
rpl20 · OR565958.1 · 68,078–68,464 bp · −
rps12 · OR565958.1 · 69,231–69,344 bp · −
rps12 · OR565958.1 · 96,569–97,362 bp · −
clpP · OR565958.1 · 69,471–71,335 bp · −
psbN · OR565958.1 · 73,660–73,791 bp · −
rpoA · OR565958.1 · 77,198–78,211 bp · −
rps11 · OR565958.1 · 78,283–78,714 bp · −
rpl36 · OR565958.1 · 78,802–78,915 bp · −
infA · OR565958.1 · 79,011–79,244 bp · −
rps8 · OR565958.1 · 79,369–79,782 bp · −
rpl14 · OR565958.1 · 79,955–80,323 bp · −
rpl16 · OR565958.1 · 80,450–81,756 bp · −
rps3 · OR565958.1 · 81,903–82,565 bp · −
rpl22 · OR565958.1 · 82,550–83,014 bp · −
rps19 · OR565958.1 · 83,074–83,352 bp · −
rpl2 · OR565958.1 · 83,405–84,896 bp · −
rpl23 · OR565958.1 · 84,915–85,196 bp · −
trnI-CAU · OR565958.1 · 85,362–85,435 bp · −
trnL-CAA · OR565958.1 · 92,942–93,022 bp · −
ndhB · OR565958.1 · 93,562–95,773 bp · −
rps7 · OR565958.1 · 96,048–96,515 bp · −
trnN-GUU · OR565958.1 · 107,463–107,534 bp · −
ndhF · OR565958.1 · 108,924–111,146 bp · −
ndhD · OR565958.1 · 113,869–115,389 bp · −
psaC · OR565958.1 · 115,488–115,733 bp · −
ndhE · OR565958.1 · 115,996–116,301 bp · −
ndhG · OR565958.1 · 116,523–117,053 bp · −
ndhI · OR565958.1 · 117,432–117,929 bp · −
ndhA · OR565958.1 · 118,016–120,175 bp · −
ndhH · OR565958.1 · 120,177–121,358 bp · −
rps15 · OR565958.1 · 121,459–121,731 bp · −
ycf1 · OR565958.1 · 122,112–127,673 bp · −
trnR-ACG · OR565958.1 · 128,638–128,710 bp · −
rrn5 · OR565958.1 · 128,945–129,065 bp · −
rrn4.5 · OR565958.1 · 129,321–129,423 bp · −
rrn23 · OR565958.1 · 129,522–132,331 bp · −
trnA-UGC · OR565958.1 · 132,524–133,402 bp · −
trnI-GAU · OR565958.1 · 133,467–134,475 bp · −
rrn16 · OR565958.1 · 134,765–136,255 bp · −
trnV-GAC · OR565958.1 · 136,483–136,554 bp · −
ycf15 · OR565958.1 · 142,852–143,100 bp · −
ycf2 · OR565958.1 · 143,143–150,009 bp · −
psbK · OR565958.1 · 7,611–7,796 bp · +
psbI · OR565958.1 · 8,172–8,282 bp · +
trnG-UCC · OR565958.1 · 9,201–9,960 bp · +
trnR-UCU · OR565958.1 · 10,137–10,208 bp · +
trnC-GCA · OR565958.1 · 28,170–28,245 bp · +
petN · OR565958.1 · 29,076–29,171 bp · +
trnT-GGU · OR565958.1 · 31,538–31,608 bp · +
psbD · OR565958.1 · 32,860–33,921 bp · +
psbC · OR565958.1 · 33,869–35,290 bp · +
psbZ · OR565958.1 · 35,938–36,126 bp · +
trnG-GCC · OR565958.1 · 36,356–36,426 bp · +
trnS-GGA · OR565958.1 · 44,732–44,818 bp · +
trnL-UAA · OR565958.1 · 46,889–47,462 bp · +
trnF-GAA · OR565958.1 · 47,754–47,826 bp · +
trnM-CAU · OR565958.1 · 51,960–52,032 bp · +
rbcL · OR565958.1 · 54,948–56,402 bp · +
accD · OR565958.1 · 57,092–58,558 bp · +
psaI · OR565958.1 · 59,245–59,355 bp · +
ycf4 · OR565958.1 · 59,791–60,345 bp · +
cemA · OR565958.1 · 60,913–61,602 bp · +
petA · OR565958.1 · 61,819–62,781 bp · +
petL · OR565958.1 · 65,539–65,634 bp · +
petG · OR565958.1 · 65,809–65,922 bp · +
psaJ · OR565958.1 · 66,639–66,773 bp · +
rpl33 · OR565958.1 · 67,246–67,446 bp · +
rps18 · OR565958.1 · 67,593–67,898 bp · +
rps12 · OR565958.1 · 138,171–138,964 bp · +
psbB · OR565958.1 · 71,773–73,299 bp · +
psbT · OR565958.1 · 73,492–73,599 bp · +
psbH · OR565958.1 · 73,895–74,116 bp · +
petB · OR565958.1 · 74,241–75,619 bp · +
petD · OR565958.1 · 75,814–77,035 bp · +
ycf2 · OR565958.1 · 85,524–92,390 bp · +
ycf15 · OR565958.1 · 92,433–92,681 bp · +
trnV-GAC · OR565958.1 · 98,979–99,050 bp · +
rrn16 · OR565958.1 · 99,278–100,768 bp · +
trnI-GAU · OR565958.1 · 101,058–102,066 bp · +
trnA-UGC · OR565958.1 · 102,131–103,009 bp · +
rrn23 · OR565958.1 · 103,202–106,011 bp · +
rrn4.5 · OR565958.1 · 106,110–106,212 bp · +
rrn5 · OR565958.1 · 106,468–106,588 bp · +
trnR-ACG · OR565958.1 · 106,823–106,895 bp · +
rpl32 · OR565958.1 · 111,651–111,827 bp · +
trnL-UAG · OR565958.1 · 112,551–112,630 bp · +
ccsA · OR565958.1 · 112,715–113,686 bp · +
trnN-GUU · OR565958.1 · 127,999–128,070 bp · +
rps7 · OR565958.1 · 139,018–139,485 bp · +
ndhB · OR565958.1 · 139,760–141,971 bp · +
trnL-CAA · OR565958.1 · 142,511–142,591 bp · +
trnI-CAU · OR565958.1 · 150,098–150,171 bp · +
rpl23 · OR565958.1 · 150,337–150,618 bp · +
rpl2 · OR565958.1 · 150,637–152,128 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Paraphlomis hirsutissima
ANNOTATED PLASTOME
OR565958.1
152,222 bp · 132 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38056 76111 114166 152222 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
133 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 2 76 75 Locate
psbA gene − 308 1366 1059 Locate
trnK-UUU gene − 1599 4188 2590 Locate
matK gene − 1904 3439 1536 Locate
rps16 gene − 5115 6255 1141 Locate
trnQ-UUG gene − 7203 7274 72 Locate
psbK gene + 7611 7796 186 Locate
psbI gene + 8172 8282 111 Locate
trnS-GCU gene − 8414 8501 88 Locate
trnG-UCC gene + 9201 9960 760 Locate
trnR-UCU gene + 10137 10208 72 Locate
atpA gene − 10305 11828 1524 Locate
atpF gene − 11916 13138 1223 Locate
atpH gene − 13505 13750 246 Locate
atpI gene − 14750 15493 744 Locate
rps2 gene − 15724 16434 711 Locate
rpoC2 gene − 16734 20843 4110 Locate
rpoC1 gene − 20998 23829 2832 Locate
rpoB gene − 23856 27068 3213 Locate
trnC-GCA gene + 28170 28245 76 Locate
petN gene + 29076 29171 96 Locate
psbM gene − 29947 30051 105 Locate
trnD-GUC gene − 30575 30648 74 Locate
trnY-GUA gene − 30763 30846 84 Locate
trnE-UUC gene − 30906 30975 70 Locate
trnT-GGU gene + 31538 31608 71 Locate
psbD gene + 32860 33921 1062 Locate
psbC gene + 33869 35290 1422 Locate
trnS-UGA gene − 35521 35613 93 Locate
psbZ gene + 35938 36126 189 Locate
trnG-GCC gene + 36356 36426 71 Locate
trnfM-CAU gene − 36576 36649 74 Locate
rps14 gene − 36799 37101 303 Locate
psaB gene − 37229 39433 2205 Locate
psaA gene − 39459 41711 2253 Locate
ycf3 gene − 42447 44402 1956 Locate
trnS-GGA gene + 44732 44818 87 Locate
rps4 gene − 45143 45748 606 Locate
trnT-UGU gene − 46139 46211 73 Locate
trnL-UAA gene + 46889 47462 574 Locate
trnF-GAA gene + 47754 47826 73 Locate
ndhJ gene − 48489 48965 477 Locate
ndhK gene − 49066 49743 678 Locate
ndhC gene − 49797 50159 363 Locate
trnV-UAC gene − 51125 51771 647 Locate
trnM-CAU gene + 51960 52032 73 Locate
atpE gene − 52250 52651 402 Locate
atpB gene − 52648 54138 1491 Locate
rbcL gene + 54948 56402 1455 Locate
accD gene + 57092 58558 1467 Locate
psaI gene + 59245 59355 111 Locate
ycf4 gene + 59791 60345 555 Locate
cemA gene + 60913 61602 690 Locate
petA gene + 61819 62781 963 Locate
psbJ gene − 63826 63948 123 Locate
psbL gene − 64086 64202 117 Locate
psbF gene − 64226 64345 120 Locate
psbE gene − 64360 64611 252 Locate
petL gene + 65539 65634 96 Locate
petG gene + 65809 65922 114 Locate
trnW-CCA gene − 66048 66121 74 Locate
trnP-UGG gene − 66291 66364 74 Locate
psaJ gene + 66639 66773 135 Locate
rpl33 gene + 67246 67446 201 Locate
rps18 gene + 67593 67898 306 Locate
rpl20 gene − 68078 68464 387 Locate
rps12 gene − 69231 69344 114 Locate
clpP gene − 69471 71335 1865 Locate
psbB gene + 71773 73299 1527 Locate
psbT gene + 73492 73599 108 Locate
psbN gene − 73660 73791 132 Locate
psbH gene + 73895 74116 222 Locate
petB gene + 74241 75619 1379 Locate
petD gene + 75814 77035 1222 Locate
rpoA gene − 77198 78211 1014 Locate
rps11 gene − 78283 78714 432 Locate
rpl36 gene − 78802 78915 114 Locate
infA gene − 79011 79244 234 Locate
rps8 gene − 79369 79782 414 Locate
rpl14 gene − 79955 80323 369 Locate
rpl16 gene − 80450 81756 1307 Locate
rps3 gene − 81903 82565 663 Locate
rpl22 gene − 82550 83014 465 Locate
rps19 gene − 83074 83352 279 Locate
rpl2 gene − 83405 84896 1492 Locate
rpl23 gene − 84915 85196 282 Locate
trnI-CAU gene − 85362 85435 74 Locate
ycf2 gene + 85524 92390 6867 Locate
ycf15 gene + 92433 92681 249 Locate
trnL-CAA gene − 92942 93022 81 Locate
ndhB gene − 93562 95773 2212 Locate
rps7 gene − 96048 96515 468 Locate
rps12 gene − 96569 97362 794 Locate
trnV-GAC gene + 98979 99050 72 Locate
rrn16 gene + 99278 100768 1491 Locate
trnI-GAU gene + 101058 102066 1009 Locate
trnA-UGC gene + 102131 103009 879 Locate
rrn23 gene + 103202 106011 2810 Locate
rrn4.5 gene + 106110 106212 103 Locate
rrn5 gene + 106468 106588 121 Locate
trnR-ACG gene + 106823 106895 73 Locate
trnN-GUU gene − 107463 107534 72 Locate
ndhF gene − 108924 111146 2223 Locate
rpl32 gene + 111651 111827 177 Locate
trnL-UAG gene + 112551 112630 80 Locate
ccsA gene + 112715 113686 972 Locate
ndhD gene − 113869 115389 1521 Locate
psaC gene − 115488 115733 246 Locate
ndhE gene − 115996 116301 306 Locate
ndhG gene − 116523 117053 531 Locate
ndhI gene − 117432 117929 498 Locate
ndhA gene − 118016 120175 2160 Locate
ndhH gene − 120177 121358 1182 Locate
rps15 gene − 121459 121731 273 Locate
ycf1 gene − 122112 127673 5562 Locate
trnN-GUU gene + 127999 128070 72 Locate
trnR-ACG gene − 128638 128710 73 Locate
rrn5 gene − 128945 129065 121 Locate
rrn4.5 gene − 129321 129423 103 Locate
rrn23 gene − 129522 132331 2810 Locate
trnA-UGC gene − 132524 133402 879 Locate
trnI-GAU gene − 133467 134475 1009 Locate
rrn16 gene − 134765 136255 1491 Locate
trnV-GAC gene − 136483 136554 72 Locate
rps12 gene + 138171 138964 794 Locate
rps7 gene + 139018 139485 468 Locate
ndhB gene + 139760 141971 2212 Locate
trnL-CAA gene + 142511 142591 81 Locate
ycf15 gene − 142852 143100 249 Locate
ycf2 gene − 143143 150009 6867 Locate
trnI-CAU gene + 150098 150171 74 Locate
rpl23 gene + 150337 150618 282 Locate
rpl2 gene + 150637 152128 1492 Locate
Status Available
Accession OR565958.1
Length 152,222 bp
GC content 38.4%
Annotated genes 132
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 14 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources