Paraphlomis intermedia chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · OR565934.1 · 2–76 bp · −
psbA · OR565934.1 · 307–1,365 bp · −
trnK-UUU · OR565934.1 · 1,598–4,186 bp · −
matK · OR565934.1 · 1,902–3,437 bp · −
rps16 · OR565934.1 · 5,114–6,254 bp · −
trnQ-UUG · OR565934.1 · 7,198–7,269 bp · −
trnS-GCU · OR565934.1 · 8,405–8,492 bp · −
atpA · OR565934.1 · 10,279–11,802 bp · −
atpF · OR565934.1 · 11,890–13,102 bp · −
atpH · OR565934.1 · 13,470–13,715 bp · −
atpI · OR565934.1 · 14,716–15,459 bp · −
rps2 · OR565934.1 · 15,690–16,400 bp · −
rpoC2 · OR565934.1 · 16,700–20,815 bp · −
rpoC1 · OR565934.1 · 20,970–23,801 bp · −
rpoB · OR565934.1 · 23,828–27,040 bp · −
psbM · OR565934.1 · 29,932–30,036 bp · −
trnD-GUC · OR565934.1 · 30,560–30,633 bp · −
trnY-GUA · OR565934.1 · 30,748–30,831 bp · −
trnE-UUC · OR565934.1 · 30,891–30,963 bp · −
trnS-UGA · OR565934.1 · 35,507–35,599 bp · −
trnfM-CAU · OR565934.1 · 36,557–36,630 bp · −
rps14 · OR565934.1 · 36,780–37,082 bp · −
psaB · OR565934.1 · 37,210–39,414 bp · −
psaA · OR565934.1 · 39,440–41,692 bp · −
ycf3 · OR565934.1 · 42,420–44,375 bp · −
rps4 · OR565934.1 · 45,089–45,694 bp · −
trnT-UGU · OR565934.1 · 46,087–46,159 bp · −
ndhJ · OR565934.1 · 48,436–48,930 bp · −
ndhK · OR565934.1 · 49,013–49,690 bp · −
ndhC · OR565934.1 · 49,743–50,105 bp · −
trnV-UAC · OR565934.1 · 51,071–51,723 bp · −
atpE · OR565934.1 · 52,202–52,603 bp · −
atpB · OR565934.1 · 52,600–54,096 bp · −
psbJ · OR565934.1 · 63,719–63,841 bp · −
psbL · OR565934.1 · 63,979–64,095 bp · −
psbF · OR565934.1 · 64,119–64,238 bp · −
psbE · OR565934.1 · 64,253–64,504 bp · −
trnW-CCA · OR565934.1 · 65,943–66,016 bp · −
trnP-UGG · OR565934.1 · 66,186–66,259 bp · −
rpl20 · OR565934.1 · 67,970–68,356 bp · −
rps12 · OR565934.1 · 69,112–69,225 bp · −
rps12 · OR565934.1 · 96,471–97,264 bp · −
clpP · OR565934.1 · 69,352–71,219 bp · −
psbN · OR565934.1 · 73,543–73,674 bp · −
rpoA · OR565934.1 · 77,084–78,097 bp · −
rps11 · OR565934.1 · 78,169–78,600 bp · −
rpl36 · OR565934.1 · 78,688–78,801 bp · −
infA · OR565934.1 · 78,897–79,130 bp · −
rps8 · OR565934.1 · 79,254–79,667 bp · −
rpl14 · OR565934.1 · 79,858–80,226 bp · −
rpl16 · OR565934.1 · 80,353–81,659 bp · −
rps3 · OR565934.1 · 81,806–82,468 bp · −
rpl22 · OR565934.1 · 82,453–82,917 bp · −
rps19 · OR565934.1 · 82,977–83,255 bp · −
rpl2 · OR565934.1 · 83,307–84,798 bp · −
rpl23 · OR565934.1 · 84,817–85,098 bp · −
trnI-CAU · OR565934.1 · 85,264–85,337 bp · −
trnL-CAA · OR565934.1 · 92,844–92,924 bp · −
ndhB · OR565934.1 · 93,464–95,675 bp · −
rps7 · OR565934.1 · 95,950–96,417 bp · −
trnN-GUU · OR565934.1 · 107,365–107,436 bp · −
ndhF · OR565934.1 · 108,826–111,048 bp · −
ndhD · OR565934.1 · 113,774–115,294 bp · −
psaC · OR565934.1 · 115,394–115,639 bp · −
ndhE · OR565934.1 · 115,902–116,207 bp · −
ndhG · OR565934.1 · 116,429–116,959 bp · −
ndhI · OR565934.1 · 117,339–117,845 bp · −
ndhA · OR565934.1 · 117,932–120,091 bp · −
ndhH · OR565934.1 · 120,093–121,274 bp · −
rps15 · OR565934.1 · 121,375–121,647 bp · −
ycf1 · OR565934.1 · 122,028–127,580 bp · −
trnR-ACG · OR565934.1 · 128,545–128,617 bp · −
rrn5 · OR565934.1 · 128,852–128,972 bp · −
rrn4.5 · OR565934.1 · 129,228–129,330 bp · −
rrn23 · OR565934.1 · 129,429–132,238 bp · −
trnA-UGC · OR565934.1 · 132,431–133,309 bp · −
trnI-GAU · OR565934.1 · 133,374–134,382 bp · −
rrn16 · OR565934.1 · 134,672–136,162 bp · −
trnV-GAC · OR565934.1 · 136,390–136,461 bp · −
ycf15 · OR565934.1 · 142,759–143,007 bp · −
ycf2 · OR565934.1 · 143,050–149,916 bp · −
psbK · OR565934.1 · 7,606–7,791 bp · +
psbI · OR565934.1 · 8,170–8,280 bp · +
trnG-UCC · OR565934.1 · 9,184–9,934 bp · +
trnR-UCU · OR565934.1 · 10,111–10,182 bp · +
trnC-GCA · OR565934.1 · 28,142–28,217 bp · +
petN · OR565934.1 · 29,054–29,143 bp · +
trnT-GGU · OR565934.1 · 31,523–31,593 bp · +
psbD · OR565934.1 · 32,843–33,904 bp · +
psbC · OR565934.1 · 33,852–35,273 bp · +
psbZ · OR565934.1 · 35,925–36,113 bp · +
trnG-GCC · OR565934.1 · 36,337–36,407 bp · +
trnS-GGA · OR565934.1 · 44,705–44,791 bp · +
trnL-UAA · OR565934.1 · 46,835–47,409 bp · +
trnF-GAA · OR565934.1 · 47,701–47,773 bp · +
trnM-CAU · OR565934.1 · 51,912–51,984 bp · +
rbcL · OR565934.1 · 54,899–56,344 bp · +
accD · OR565934.1 · 56,991–58,457 bp · +
psaI · OR565934.1 · 59,145–59,255 bp · +
ycf4 · OR565934.1 · 59,691–60,245 bp · +
cemA · OR565934.1 · 60,806–61,495 bp · +
petA · OR565934.1 · 61,712–62,674 bp · +
petL · OR565934.1 · 65,434–65,529 bp · +
petG · OR565934.1 · 65,704–65,817 bp · +
psaJ · OR565934.1 · 66,534–66,668 bp · +
rpl33 · OR565934.1 · 67,138–67,338 bp · +
rps18 · OR565934.1 · 67,485–67,790 bp · +
rps12 · OR565934.1 · 138,078–138,871 bp · +
psbB · OR565934.1 · 71,658–73,184 bp · +
psbT · OR565934.1 · 73,375–73,482 bp · +
psbH · OR565934.1 · 73,778–73,999 bp · +
petB · OR565934.1 · 74,124–75,505 bp · +
petD · OR565934.1 · 75,700–76,921 bp · +
ycf2 · OR565934.1 · 85,426–92,292 bp · +
ycf15 · OR565934.1 · 92,335–92,583 bp · +
trnV-GAC · OR565934.1 · 98,881–98,952 bp · +
rrn16 · OR565934.1 · 99,180–100,670 bp · +
trnI-GAU · OR565934.1 · 100,960–101,968 bp · +
trnA-UGC · OR565934.1 · 102,033–102,911 bp · +
rrn23 · OR565934.1 · 103,104–105,913 bp · +
rrn4.5 · OR565934.1 · 106,012–106,114 bp · +
rrn5 · OR565934.1 · 106,370–106,490 bp · +
trnR-ACG · OR565934.1 · 106,725–106,797 bp · +
rpl32 · OR565934.1 · 111,556–111,732 bp · +
trnL-UAG · OR565934.1 · 112,456–112,535 bp · +
ccsA · OR565934.1 · 112,620–113,591 bp · +
trnN-GUU · OR565934.1 · 127,906–127,977 bp · +
rps7 · OR565934.1 · 138,925–139,392 bp · +
ndhB · OR565934.1 · 139,667–141,878 bp · +
trnL-CAA · OR565934.1 · 142,418–142,498 bp · +
trnI-CAU · OR565934.1 · 150,005–150,078 bp · +
rpl23 · OR565934.1 · 150,244–150,525 bp · +
rpl2 · OR565934.1 · 150,544–152,035 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Paraphlomis intermedia
ANNOTATED PLASTOME
OR565934.1
152,128 bp · 132 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38032 76064 114096 152128 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
133 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 2 76 75 Locate
psbA gene − 307 1365 1059 Locate
trnK-UUU gene − 1598 4186 2589 Locate
matK gene − 1902 3437 1536 Locate
rps16 gene − 5114 6254 1141 Locate
trnQ-UUG gene − 7198 7269 72 Locate
psbK gene + 7606 7791 186 Locate
psbI gene + 8170 8280 111 Locate
trnS-GCU gene − 8405 8492 88 Locate
trnG-UCC gene + 9184 9934 751 Locate
trnR-UCU gene + 10111 10182 72 Locate
atpA gene − 10279 11802 1524 Locate
atpF gene − 11890 13102 1213 Locate
atpH gene − 13470 13715 246 Locate
atpI gene − 14716 15459 744 Locate
rps2 gene − 15690 16400 711 Locate
rpoC2 gene − 16700 20815 4116 Locate
rpoC1 gene − 20970 23801 2832 Locate
rpoB gene − 23828 27040 3213 Locate
trnC-GCA gene + 28142 28217 76 Locate
petN gene + 29054 29143 90 Locate
psbM gene − 29932 30036 105 Locate
trnD-GUC gene − 30560 30633 74 Locate
trnY-GUA gene − 30748 30831 84 Locate
trnE-UUC gene − 30891 30963 73 Locate
trnT-GGU gene + 31523 31593 71 Locate
psbD gene + 32843 33904 1062 Locate
psbC gene + 33852 35273 1422 Locate
trnS-UGA gene − 35507 35599 93 Locate
psbZ gene + 35925 36113 189 Locate
trnG-GCC gene + 36337 36407 71 Locate
trnfM-CAU gene − 36557 36630 74 Locate
rps14 gene − 36780 37082 303 Locate
psaB gene − 37210 39414 2205 Locate
psaA gene − 39440 41692 2253 Locate
ycf3 gene − 42420 44375 1956 Locate
trnS-GGA gene + 44705 44791 87 Locate
rps4 gene − 45089 45694 606 Locate
trnT-UGU gene − 46087 46159 73 Locate
trnL-UAA gene + 46835 47409 575 Locate
trnF-GAA gene + 47701 47773 73 Locate
ndhJ gene − 48436 48930 495 Locate
ndhK gene − 49013 49690 678 Locate
ndhC gene − 49743 50105 363 Locate
trnV-UAC gene − 51071 51723 653 Locate
trnM-CAU gene + 51912 51984 73 Locate
atpE gene − 52202 52603 402 Locate
atpB gene − 52600 54096 1497 Locate
rbcL gene + 54899 56344 1446 Locate
accD gene + 56991 58457 1467 Locate
psaI gene + 59145 59255 111 Locate
ycf4 gene + 59691 60245 555 Locate
cemA gene + 60806 61495 690 Locate
petA gene + 61712 62674 963 Locate
psbJ gene − 63719 63841 123 Locate
psbL gene − 63979 64095 117 Locate
psbF gene − 64119 64238 120 Locate
psbE gene − 64253 64504 252 Locate
petL gene + 65434 65529 96 Locate
petG gene + 65704 65817 114 Locate
trnW-CCA gene − 65943 66016 74 Locate
trnP-UGG gene − 66186 66259 74 Locate
psaJ gene + 66534 66668 135 Locate
rpl33 gene + 67138 67338 201 Locate
rps18 gene + 67485 67790 306 Locate
rpl20 gene − 67970 68356 387 Locate
rps12 gene − 69112 69225 114 Locate
clpP gene − 69352 71219 1868 Locate
psbB gene + 71658 73184 1527 Locate
psbT gene + 73375 73482 108 Locate
psbN gene − 73543 73674 132 Locate
psbH gene + 73778 73999 222 Locate
petB gene + 74124 75505 1382 Locate
petD gene + 75700 76921 1222 Locate
rpoA gene − 77084 78097 1014 Locate
rps11 gene − 78169 78600 432 Locate
rpl36 gene − 78688 78801 114 Locate
infA gene − 78897 79130 234 Locate
rps8 gene − 79254 79667 414 Locate
rpl14 gene − 79858 80226 369 Locate
rpl16 gene − 80353 81659 1307 Locate
rps3 gene − 81806 82468 663 Locate
rpl22 gene − 82453 82917 465 Locate
rps19 gene − 82977 83255 279 Locate
rpl2 gene − 83307 84798 1492 Locate
rpl23 gene − 84817 85098 282 Locate
trnI-CAU gene − 85264 85337 74 Locate
ycf2 gene + 85426 92292 6867 Locate
ycf15 gene + 92335 92583 249 Locate
trnL-CAA gene − 92844 92924 81 Locate
ndhB gene − 93464 95675 2212 Locate
rps7 gene − 95950 96417 468 Locate
rps12 gene − 96471 97264 794 Locate
trnV-GAC gene + 98881 98952 72 Locate
rrn16 gene + 99180 100670 1491 Locate
trnI-GAU gene + 100960 101968 1009 Locate
trnA-UGC gene + 102033 102911 879 Locate
rrn23 gene + 103104 105913 2810 Locate
rrn4.5 gene + 106012 106114 103 Locate
rrn5 gene + 106370 106490 121 Locate
trnR-ACG gene + 106725 106797 73 Locate
trnN-GUU gene − 107365 107436 72 Locate
ndhF gene − 108826 111048 2223 Locate
rpl32 gene + 111556 111732 177 Locate
trnL-UAG gene + 112456 112535 80 Locate
ccsA gene + 112620 113591 972 Locate
ndhD gene − 113774 115294 1521 Locate
psaC gene − 115394 115639 246 Locate
ndhE gene − 115902 116207 306 Locate
ndhG gene − 116429 116959 531 Locate
ndhI gene − 117339 117845 507 Locate
ndhA gene − 117932 120091 2160 Locate
ndhH gene − 120093 121274 1182 Locate
rps15 gene − 121375 121647 273 Locate
ycf1 gene − 122028 127580 5553 Locate
trnN-GUU gene + 127906 127977 72 Locate
trnR-ACG gene − 128545 128617 73 Locate
rrn5 gene − 128852 128972 121 Locate
rrn4.5 gene − 129228 129330 103 Locate
rrn23 gene − 129429 132238 2810 Locate
trnA-UGC gene − 132431 133309 879 Locate
trnI-GAU gene − 133374 134382 1009 Locate
rrn16 gene − 134672 136162 1491 Locate
trnV-GAC gene − 136390 136461 72 Locate
rps12 gene + 138078 138871 794 Locate
rps7 gene + 138925 139392 468 Locate
ndhB gene + 139667 141878 2212 Locate
trnL-CAA gene + 142418 142498 81 Locate
ycf15 gene − 142759 143007 249 Locate
ycf2 gene − 143050 149916 6867 Locate
trnI-CAU gene + 150005 150078 74 Locate
rpl23 gene + 150244 150525 282 Locate
rpl2 gene + 150544 152035 1492 Locate
Status Available
Accession OR565934.1
Length 152,128 bp
GC content 38.4%
Annotated genes 132
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 14 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources