Paraphlomis javanica var. pteropoda chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · OR565943.1 · 2–76 bp · −
psbA · OR565943.1 · 307–1,365 bp · −
trnK-UUU · OR565943.1 · 1,598–4,189 bp · −
matK · OR565943.1 · 1,905–3,440 bp · −
rps16 · OR565943.1 · 5,100–6,240 bp · −
trnQ-UUG · OR565943.1 · 7,184–7,256 bp · −
trnS-GCU · OR565943.1 · 8,389–8,476 bp · −
atpA · OR565943.1 · 10,274–11,797 bp · −
atpF · OR565943.1 · 11,885–13,106 bp · −
atpH · OR565943.1 · 13,477–13,722 bp · −
atpI · OR565943.1 · 14,722–15,465 bp · −
rps2 · OR565943.1 · 15,696–16,406 bp · −
rpoC2 · OR565943.1 · 16,706–20,815 bp · −
rpoC1 · OR565943.1 · 20,970–23,800 bp · −
rpoB · OR565943.1 · 23,827–27,039 bp · −
psbM · OR565943.1 · 29,935–30,039 bp · −
trnD-GUC · OR565943.1 · 30,563–30,636 bp · −
trnY-GUA · OR565943.1 · 30,751–30,834 bp · −
trnE-UUC · OR565943.1 · 30,894–30,963 bp · −
trnS-UGA · OR565943.1 · 35,520–35,612 bp · −
trnfM-CAU · OR565943.1 · 36,575–36,648 bp · −
rps14 · OR565943.1 · 36,798–37,100 bp · −
psaB · OR565943.1 · 37,228–39,432 bp · −
psaA · OR565943.1 · 39,458–41,710 bp · −
ycf3 · OR565943.1 · 42,438–44,394 bp · −
rps4 · OR565943.1 · 45,109–45,714 bp · −
trnT-UGU · OR565943.1 · 46,105–46,177 bp · −
ndhJ · OR565943.1 · 48,455–48,931 bp · −
ndhK · OR565943.1 · 49,032–49,709 bp · −
ndhC · OR565943.1 · 49,763–50,125 bp · −
trnV-UAC · OR565943.1 · 51,092–51,738 bp · −
atpE · OR565943.1 · 52,217–52,618 bp · −
atpB · OR565943.1 · 52,615–54,111 bp · −
psbJ · OR565943.1 · 63,793–63,915 bp · −
psbL · OR565943.1 · 64,053–64,169 bp · −
psbF · OR565943.1 · 64,193–64,312 bp · −
psbE · OR565943.1 · 64,327–64,578 bp · −
trnW-CCA · OR565943.1 · 66,015–66,088 bp · −
trnP-UGG · OR565943.1 · 66,258–66,331 bp · −
rpl20 · OR565943.1 · 68,045–68,431 bp · −
rps12 · OR565943.1 · 69,198–69,311 bp · −
rps12 · OR565943.1 · 96,559–97,352 bp · −
clpP · OR565943.1 · 69,438–71,304 bp · −
psbN · OR565943.1 · 73,631–73,762 bp · −
rpoA · OR565943.1 · 77,170–78,183 bp · −
rps11 · OR565943.1 · 78,255–78,686 bp · −
rpl36 · OR565943.1 · 78,774–78,887 bp · −
infA · OR565943.1 · 78,983–79,216 bp · −
rps8 · OR565943.1 · 79,341–79,754 bp · −
rpl14 · OR565943.1 · 79,945–80,313 bp · −
rpl16 · OR565943.1 · 80,440–81,746 bp · −
rps3 · OR565943.1 · 81,893–82,555 bp · −
rpl22 · OR565943.1 · 82,540–83,004 bp · −
rps19 · OR565943.1 · 83,064–83,342 bp · −
rpl2 · OR565943.1 · 83,395–84,886 bp · −
rpl23 · OR565943.1 · 84,905–85,186 bp · −
trnI-CAU · OR565943.1 · 85,352–85,425 bp · −
trnL-CAA · OR565943.1 · 92,932–93,012 bp · −
ndhB · OR565943.1 · 93,552–95,763 bp · −
rps7 · OR565943.1 · 96,038–96,505 bp · −
trnN-GUU · OR565943.1 · 107,453–107,524 bp · −
ndhF · OR565943.1 · 108,914–111,136 bp · −
ndhD · OR565943.1 · 113,859–115,379 bp · −
psaC · OR565943.1 · 115,478–115,723 bp · −
ndhE · OR565943.1 · 115,986–116,291 bp · −
ndhG · OR565943.1 · 116,513–117,043 bp · −
ndhI · OR565943.1 · 117,422–117,919 bp · −
ndhA · OR565943.1 · 118,006–120,165 bp · −
ndhH · OR565943.1 · 120,167–121,348 bp · −
rps15 · OR565943.1 · 121,449–121,784 bp · −
ycf1 · OR565943.1 · 122,102–127,654 bp · −
trnR-ACG · OR565943.1 · 128,618–128,691 bp · −
rrn5 · OR565943.1 · 128,926–129,046 bp · −
rrn4.5 · OR565943.1 · 129,302–129,404 bp · −
rrn23 · OR565943.1 · 129,503–132,312 bp · −
trnA-UGC · OR565943.1 · 132,505–133,383 bp · −
trnI-GAU · OR565943.1 · 133,448–134,456 bp · −
rrn16 · OR565943.1 · 134,746–136,236 bp · −
trnV-GAC · OR565943.1 · 136,464–136,535 bp · −
ycf15 · OR565943.1 · 142,833–143,096 bp · −
ycf2 · OR565943.1 · 143,124–149,990 bp · −
psbK · OR565943.1 · 7,593–7,778 bp · +
psbI · OR565943.1 · 8,155–8,265 bp · +
trnG-UCC · OR565943.1 · 9,170–9,929 bp · +
trnR-UCU · OR565943.1 · 10,106–10,177 bp · +
trnC-GCA · OR565943.1 · 28,141–28,216 bp · +
petN · OR565943.1 · 29,047–29,142 bp · +
trnT-GGU · OR565943.1 · 31,537–31,607 bp · +
psbD · OR565943.1 · 32,859–33,920 bp · +
psbC · OR565943.1 · 33,868–35,289 bp · +
psbZ · OR565943.1 · 35,937–36,125 bp · +
trnG-GCC · OR565943.1 · 36,355–36,425 bp · +
trnS-GGA · OR565943.1 · 44,724–44,810 bp · +
trnL-UAA · OR565943.1 · 46,855–47,428 bp · +
trnF-GAA · OR565943.1 · 47,720–47,792 bp · +
trnM-CAU · OR565943.1 · 51,928–51,999 bp · +
rbcL · OR565943.1 · 54,894–56,369 bp · +
accD · OR565943.1 · 57,059–58,525 bp · +
psaI · OR565943.1 · 59,212–59,322 bp · +
ycf4 · OR565943.1 · 59,758–60,312 bp · +
cemA · OR565943.1 · 60,880–61,569 bp · +
petA · OR565943.1 · 61,786–62,748 bp · +
petL · OR565943.1 · 65,506–65,601 bp · +
petG · OR565943.1 · 65,776–65,889 bp · +
psaJ · OR565943.1 · 66,606–66,740 bp · +
rpl33 · OR565943.1 · 67,213–67,413 bp · +
rps18 · OR565943.1 · 67,560–67,865 bp · +
rps12 · OR565943.1 · 138,152–138,945 bp · +
psbB · OR565943.1 · 71,742–73,268 bp · +
psbT · OR565943.1 · 73,463–73,570 bp · +
psbH · OR565943.1 · 73,866–74,087 bp · +
petB · OR565943.1 · 74,212–75,591 bp · +
petD · OR565943.1 · 75,786–77,007 bp · +
ycf2 · OR565943.1 · 85,514–92,380 bp · +
ycf15 · OR565943.1 · 92,423–92,671 bp · +
trnV-GAC · OR565943.1 · 98,969–99,040 bp · +
rrn16 · OR565943.1 · 99,268–100,758 bp · +
trnI-GAU · OR565943.1 · 101,048–102,056 bp · +
trnA-UGC · OR565943.1 · 102,121–102,999 bp · +
rrn23 · OR565943.1 · 103,192–106,001 bp · +
rrn4.5 · OR565943.1 · 106,100–106,202 bp · +
rrn5 · OR565943.1 · 106,458–106,578 bp · +
trnR-ACG · OR565943.1 · 106,813–106,886 bp · +
rpl32 · OR565943.1 · 111,641–111,817 bp · +
trnL-UAG · OR565943.1 · 112,541–112,620 bp · +
ccsA · OR565943.1 · 112,705–113,676 bp · +
trnN-GUU · OR565943.1 · 127,980–128,051 bp · +
rps7 · OR565943.1 · 138,999–139,466 bp · +
ndhB · OR565943.1 · 139,741–141,952 bp · +
trnL-CAA · OR565943.1 · 142,492–142,572 bp · +
trnI-CAU · OR565943.1 · 150,079–150,152 bp · +
rpl23 · OR565943.1 · 150,318–150,599 bp · +
rpl2 · OR565943.1 · 150,618–152,109 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Paraphlomis javanica var. pteropoda
ANNOTATED PLASTOME
OR565943.1
152,203 bp · 132 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38051 76102 114152 152203 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
133 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 2 76 75 Locate
psbA gene − 307 1365 1059 Locate
trnK-UUU gene − 1598 4189 2592 Locate
matK gene − 1905 3440 1536 Locate
rps16 gene − 5100 6240 1141 Locate
trnQ-UUG gene − 7184 7256 73 Locate
psbK gene + 7593 7778 186 Locate
psbI gene + 8155 8265 111 Locate
trnS-GCU gene − 8389 8476 88 Locate
trnG-UCC gene + 9170 9929 760 Locate
trnR-UCU gene + 10106 10177 72 Locate
atpA gene − 10274 11797 1524 Locate
atpF gene − 11885 13106 1222 Locate
atpH gene − 13477 13722 246 Locate
atpI gene − 14722 15465 744 Locate
rps2 gene − 15696 16406 711 Locate
rpoC2 gene − 16706 20815 4110 Locate
rpoC1 gene − 20970 23800 2831 Locate
rpoB gene − 23827 27039 3213 Locate
trnC-GCA gene + 28141 28216 76 Locate
petN gene + 29047 29142 96 Locate
psbM gene − 29935 30039 105 Locate
trnD-GUC gene − 30563 30636 74 Locate
trnY-GUA gene − 30751 30834 84 Locate
trnE-UUC gene − 30894 30963 70 Locate
trnT-GGU gene + 31537 31607 71 Locate
psbD gene + 32859 33920 1062 Locate
psbC gene + 33868 35289 1422 Locate
trnS-UGA gene − 35520 35612 93 Locate
psbZ gene + 35937 36125 189 Locate
trnG-GCC gene + 36355 36425 71 Locate
trnfM-CAU gene − 36575 36648 74 Locate
rps14 gene − 36798 37100 303 Locate
psaB gene − 37228 39432 2205 Locate
psaA gene − 39458 41710 2253 Locate
ycf3 gene − 42438 44394 1957 Locate
trnS-GGA gene + 44724 44810 87 Locate
rps4 gene − 45109 45714 606 Locate
trnT-UGU gene − 46105 46177 73 Locate
trnL-UAA gene + 46855 47428 574 Locate
trnF-GAA gene + 47720 47792 73 Locate
ndhJ gene − 48455 48931 477 Locate
ndhK gene − 49032 49709 678 Locate
ndhC gene − 49763 50125 363 Locate
trnV-UAC gene − 51092 51738 647 Locate
trnM-CAU gene + 51928 51999 72 Locate
atpE gene − 52217 52618 402 Locate
atpB gene − 52615 54111 1497 Locate
rbcL gene + 54894 56369 1476 Locate
accD gene + 57059 58525 1467 Locate
psaI gene + 59212 59322 111 Locate
ycf4 gene + 59758 60312 555 Locate
cemA gene + 60880 61569 690 Locate
petA gene + 61786 62748 963 Locate
psbJ gene − 63793 63915 123 Locate
psbL gene − 64053 64169 117 Locate
psbF gene − 64193 64312 120 Locate
psbE gene − 64327 64578 252 Locate
petL gene + 65506 65601 96 Locate
petG gene + 65776 65889 114 Locate
trnW-CCA gene − 66015 66088 74 Locate
trnP-UGG gene − 66258 66331 74 Locate
psaJ gene + 66606 66740 135 Locate
rpl33 gene + 67213 67413 201 Locate
rps18 gene + 67560 67865 306 Locate
rpl20 gene − 68045 68431 387 Locate
rps12 gene − 69198 69311 114 Locate
clpP gene − 69438 71304 1867 Locate
psbB gene + 71742 73268 1527 Locate
psbT gene + 73463 73570 108 Locate
psbN gene − 73631 73762 132 Locate
psbH gene + 73866 74087 222 Locate
petB gene + 74212 75591 1380 Locate
petD gene + 75786 77007 1222 Locate
rpoA gene − 77170 78183 1014 Locate
rps11 gene − 78255 78686 432 Locate
rpl36 gene − 78774 78887 114 Locate
infA gene − 78983 79216 234 Locate
rps8 gene − 79341 79754 414 Locate
rpl14 gene − 79945 80313 369 Locate
rpl16 gene − 80440 81746 1307 Locate
rps3 gene − 81893 82555 663 Locate
rpl22 gene − 82540 83004 465 Locate
rps19 gene − 83064 83342 279 Locate
rpl2 gene − 83395 84886 1492 Locate
rpl23 gene − 84905 85186 282 Locate
trnI-CAU gene − 85352 85425 74 Locate
ycf2 gene + 85514 92380 6867 Locate
ycf15 gene + 92423 92671 249 Locate
trnL-CAA gene − 92932 93012 81 Locate
ndhB gene − 93552 95763 2212 Locate
rps7 gene − 96038 96505 468 Locate
rps12 gene − 96559 97352 794 Locate
trnV-GAC gene + 98969 99040 72 Locate
rrn16 gene + 99268 100758 1491 Locate
trnI-GAU gene + 101048 102056 1009 Locate
trnA-UGC gene + 102121 102999 879 Locate
rrn23 gene + 103192 106001 2810 Locate
rrn4.5 gene + 106100 106202 103 Locate
rrn5 gene + 106458 106578 121 Locate
trnR-ACG gene + 106813 106886 74 Locate
trnN-GUU gene − 107453 107524 72 Locate
ndhF gene − 108914 111136 2223 Locate
rpl32 gene + 111641 111817 177 Locate
trnL-UAG gene + 112541 112620 80 Locate
ccsA gene + 112705 113676 972 Locate
ndhD gene − 113859 115379 1521 Locate
psaC gene − 115478 115723 246 Locate
ndhE gene − 115986 116291 306 Locate
ndhG gene − 116513 117043 531 Locate
ndhI gene − 117422 117919 498 Locate
ndhA gene − 118006 120165 2160 Locate
ndhH gene − 120167 121348 1182 Locate
rps15 gene − 121449 121784 336 Locate
ycf1 gene − 122102 127654 5553 Locate
trnN-GUU gene + 127980 128051 72 Locate
trnR-ACG gene − 128618 128691 74 Locate
rrn5 gene − 128926 129046 121 Locate
rrn4.5 gene − 129302 129404 103 Locate
rrn23 gene − 129503 132312 2810 Locate
trnA-UGC gene − 132505 133383 879 Locate
trnI-GAU gene − 133448 134456 1009 Locate
rrn16 gene − 134746 136236 1491 Locate
trnV-GAC gene − 136464 136535 72 Locate
rps12 gene + 138152 138945 794 Locate
rps7 gene + 138999 139466 468 Locate
ndhB gene + 139741 141952 2212 Locate
trnL-CAA gene + 142492 142572 81 Locate
ycf15 gene − 142833 143096 264 Locate
ycf2 gene − 143124 149990 6867 Locate
trnI-CAU gene + 150079 150152 74 Locate
rpl23 gene + 150318 150599 282 Locate
rpl2 gene + 150618 152109 1492 Locate
Status Available
Accession OR565943.1
Length 152,203 bp
GC content 38.4%
Annotated genes 132
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 14 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources