Paraphlomis javanica chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · NC_085355.1 · 1–72 bp · −
psbA · NC_085355.1 · 305–1,363 bp · −
trnK-UUU · NC_085355.1 · 1,596–4,186 bp · −
matK · NC_085355.1 · 1,902–3,437 bp · −
rps16 · NC_085355.1 · 5,112–6,252 bp · −
trnQ-UUG · NC_085355.1 · 7,200–7,271 bp · −
trnS-GCU · NC_085355.1 · 8,404–8,491 bp · −
atpA · NC_085355.1 · 10,287–11,810 bp · −
atpF · NC_085355.1 · 11,898–13,120 bp · −
atpH · NC_085355.1 · 13,490–13,735 bp · −
atpI · NC_085355.1 · 14,736–15,479 bp · −
rps2 · NC_085355.1 · 15,710–16,420 bp · −
rpoC2 · NC_085355.1 · 16,720–20,829 bp · −
rpoC1 · NC_085355.1 · 20,984–23,815 bp · −
rpoB · NC_085355.1 · 23,842–27,054 bp · −
psbM · NC_085355.1 · 29,945–30,049 bp · −
trnD-GUC · NC_085355.1 · 30,573–30,646 bp · −
trnY-GUA · NC_085355.1 · 30,761–30,844 bp · −
trnE-UUC · NC_085355.1 · 30,904–30,976 bp · −
trnS-UGA · NC_085355.1 · 35,518–35,610 bp · −
trnfM-CAU · NC_085355.1 · 36,573–36,646 bp · −
rps14 · NC_085355.1 · 36,796–37,098 bp · −
psaB · NC_085355.1 · 37,226–39,430 bp · −
psaA · NC_085355.1 · 39,456–41,708 bp · −
ycf3 · NC_085355.1 · 42,436–44,392 bp · −
rps4 · NC_085355.1 · 45,107–45,712 bp · −
trnT-UGU · NC_085355.1 · 46,103–46,175 bp · −
ndhJ · NC_085355.1 · 48,469–48,945 bp · −
ndhK · NC_085355.1 · 49,046–49,807 bp · −
ndhC · NC_085355.1 · 49,777–50,139 bp · −
trnV-UAC · NC_085355.1 · 51,105–51,751 bp · −
atpE · NC_085355.1 · 52,230–52,631 bp · −
atpB · NC_085355.1 · 52,628–54,124 bp · −
psbJ · NC_085355.1 · 63,806–63,928 bp · −
psbL · NC_085355.1 · 64,066–64,182 bp · −
psbF · NC_085355.1 · 64,206–64,325 bp · −
psbE · NC_085355.1 · 64,340–64,591 bp · −
trnW-CCA · NC_085355.1 · 66,028–66,101 bp · −
trnP-UGG · NC_085355.1 · 66,271–66,344 bp · −
rpl20 · NC_085355.1 · 68,058–68,444 bp · −
rps12 · NC_085355.1 · 69,211–69,324 bp · −
rps12 · NC_085355.1 · 96,567–97,360 bp · −
clpP · NC_085355.1 · 69,451–71,315 bp · −
psbN · NC_085355.1 · 73,641–73,772 bp · −
rpoA · NC_085355.1 · 77,179–78,192 bp · −
rps11 · NC_085355.1 · 78,264–78,695 bp · −
rpl36 · NC_085355.1 · 78,783–78,896 bp · −
infA · NC_085355.1 · 78,992–79,225 bp · −
rps8 · NC_085355.1 · 79,349–79,762 bp · −
rpl14 · NC_085355.1 · 79,953–80,321 bp · −
rpl16 · NC_085355.1 · 80,448–81,754 bp · −
rps3 · NC_085355.1 · 81,901–82,563 bp · −
rpl22 · NC_085355.1 · 82,548–83,012 bp · −
rps19 · NC_085355.1 · 83,072–83,344 bp · −
rpl2 · NC_085355.1 · 83,403–84,894 bp · −
rpl23 · NC_085355.1 · 84,913–85,194 bp · −
trnI-CAU · NC_085355.1 · 85,360–85,433 bp · −
trnL-CAA · NC_085355.1 · 92,940–93,020 bp · −
ndhB · NC_085355.1 · 93,560–95,717 bp · −
rps7 · NC_085355.1 · 96,046–96,513 bp · −
trnN-GUU · NC_085355.1 · 107,461–107,532 bp · −
ndhF · NC_085355.1 · 108,922–111,144 bp · −
ndhD · NC_085355.1 · 113,886–115,388 bp · −
psaC · NC_085355.1 · 115,505–115,750 bp · −
ndhE · NC_085355.1 · 116,013–116,315 bp · −
ndhG · NC_085355.1 · 116,540–117,070 bp · −
ndhI · NC_085355.1 · 117,449–117,946 bp · −
ndhA · NC_085355.1 · 118,027–120,186 bp · −
ndhH · NC_085355.1 · 120,188–121,369 bp · −
rps15 · NC_085355.1 · 121,470–121,805 bp · −
ycf1 · NC_085355.1 · 122,123–127,675 bp · −
trnR-ACG · NC_085355.1 · 128,639–128,712 bp · −
rrn5 · NC_085355.1 · 128,947–129,067 bp · −
rrn4.5 · NC_085355.1 · 129,323–129,425 bp · −
rrn23 · NC_085355.1 · 129,526–132,334 bp · −
trnA-UGC · NC_085355.1 · 132,526–133,404 bp · −
trnI-GAU · NC_085355.1 · 133,469–134,477 bp · −
rrn16 · NC_085355.1 · 134,767–136,257 bp · −
trnV-GAC · NC_085355.1 · 136,485–136,556 bp · −
ycf15 · NC_085355.1 · 142,854–143,051 bp · −
ycf2 · NC_085355.1 · 143,145–150,011 bp · −
psbK · NC_085355.1 · 7,608–7,793 bp · +
psbI · NC_085355.1 · 8,169–8,279 bp · +
trnG-UCC · NC_085355.1 · 9,183–9,942 bp · +
trnR-UCU · NC_085355.1 · 10,119–10,190 bp · +
trnC-GCA · NC_085355.1 · 28,156–28,226 bp · +
petN · NC_085355.1 · 29,068–29,157 bp · +
trnT-GGU · NC_085355.1 · 31,536–31,607 bp · +
psbD · NC_085355.1 · 32,857–33,918 bp · +
psbC · NC_085355.1 · 33,866–35,287 bp · +
psbZ · NC_085355.1 · 35,935–36,123 bp · +
trnG-GCC · NC_085355.1 · 36,353–36,423 bp · +
trnS-GGA · NC_085355.1 · 44,722–44,808 bp · +
trnL-UAA · NC_085355.1 · 46,869–47,442 bp · +
trnF-GAA · NC_085355.1 · 47,734–47,806 bp · +
trnM-CAU · NC_085355.1 · 51,940–52,012 bp · +
rbcL · NC_085355.1 · 54,907–56,382 bp · +
accD · NC_085355.1 · 57,072–58,538 bp · +
psaI · NC_085355.1 · 59,225–59,335 bp · +
ycf4 · NC_085355.1 · 59,771–60,325 bp · +
cemA · NC_085355.1 · 60,893–61,582 bp · +
petA · NC_085355.1 · 61,799–62,761 bp · +
petL · NC_085355.1 · 65,519–65,614 bp · +
petG · NC_085355.1 · 65,789–65,902 bp · +
psaJ · NC_085355.1 · 66,619–66,753 bp · +
rpl33 · NC_085355.1 · 67,226–67,426 bp · +
rps18 · NC_085355.1 · 67,573–67,878 bp · +
rps12 · NC_085355.1 · 138,173–138,966 bp · +
psbB · NC_085355.1 · 71,753–73,279 bp · +
psbT · NC_085355.1 · 73,473–73,580 bp · +
psbH · NC_085355.1 · 73,876–74,097 bp · +
petB · NC_085355.1 · 74,222–75,600 bp · +
petD · NC_085355.1 · 75,795–77,016 bp · +
ycf2 · NC_085355.1 · 85,522–92,388 bp · +
ycf15 · NC_085355.1 · 92,482–92,679 bp · +
trnV-GAC · NC_085355.1 · 98,977–99,048 bp · +
rrn16 · NC_085355.1 · 99,276–100,766 bp · +
trnI-GAU · NC_085355.1 · 101,056–102,064 bp · +
trnA-UGC · NC_085355.1 · 102,129–103,007 bp · +
rrn23 · NC_085355.1 · 103,199–106,007 bp · +
rrn4.5 · NC_085355.1 · 106,108–106,210 bp · +
rrn5 · NC_085355.1 · 106,466–106,586 bp · +
trnR-ACG · NC_085355.1 · 106,821–106,894 bp · +
rpl32 · NC_085355.1 · 111,649–111,825 bp · +
trnL-UAG · NC_085355.1 · 112,568–112,647 bp · +
ccsA · NC_085355.1 · 112,732–113,703 bp · +
trnN-GUU · NC_085355.1 · 128,001–128,072 bp · +
rps7 · NC_085355.1 · 139,020–139,487 bp · +
ndhB · NC_085355.1 · 139,816–141,973 bp · +
trnL-CAA · NC_085355.1 · 142,513–142,593 bp · +
trnI-CAU · NC_085355.1 · 150,100–150,173 bp · +
rpl23 · NC_085355.1 · 150,339–150,620 bp · +
rpl2 · NC_085355.1 · 150,639–152,130 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Paraphlomis javanica
ANNOTATED PLASTOME
NC_085355.1
152,227 bp · 132 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38057 76114 114170 152227 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
133 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 1 72 72 Locate
psbA gene − 305 1363 1059 Locate
trnK-UUU gene − 1596 4186 2591 Locate
matK gene − 1902 3437 1536 Locate
rps16 gene − 5112 6252 1141 Locate
trnQ-UUG gene − 7200 7271 72 Locate
psbK gene + 7608 7793 186 Locate
psbI gene + 8169 8279 111 Locate
trnS-GCU gene − 8404 8491 88 Locate
trnG-UCC gene + 9183 9942 760 Locate
trnR-UCU gene + 10119 10190 72 Locate
atpA gene − 10287 11810 1524 Locate
atpF gene − 11898 13120 1223 Locate
atpH gene − 13490 13735 246 Locate
atpI gene − 14736 15479 744 Locate
rps2 gene − 15710 16420 711 Locate
rpoC2 gene − 16720 20829 4110 Locate
rpoC1 gene − 20984 23815 2832 Locate
rpoB gene − 23842 27054 3213 Locate
trnC-GCA gene + 28156 28226 71 Locate
petN gene + 29068 29157 90 Locate
psbM gene − 29945 30049 105 Locate
trnD-GUC gene − 30573 30646 74 Locate
trnY-GUA gene − 30761 30844 84 Locate
trnE-UUC gene − 30904 30976 73 Locate
trnT-GGU gene + 31536 31607 72 Locate
psbD gene + 32857 33918 1062 Locate
psbC gene + 33866 35287 1422 Locate
trnS-UGA gene − 35518 35610 93 Locate
psbZ gene + 35935 36123 189 Locate
trnG-GCC gene + 36353 36423 71 Locate
trnfM-CAU gene − 36573 36646 74 Locate
rps14 gene − 36796 37098 303 Locate
psaB gene − 37226 39430 2205 Locate
psaA gene − 39456 41708 2253 Locate
ycf3 gene − 42436 44392 1957 Locate
trnS-GGA gene + 44722 44808 87 Locate
rps4 gene − 45107 45712 606 Locate
trnT-UGU gene − 46103 46175 73 Locate
trnL-UAA gene + 46869 47442 574 Locate
trnF-GAA gene + 47734 47806 73 Locate
ndhJ gene − 48469 48945 477 Locate
ndhK gene − 49046 49807 762 Locate
ndhC gene − 49777 50139 363 Locate
trnV-UAC gene − 51105 51751 647 Locate
trnM-CAU gene + 51940 52012 73 Locate
atpE gene − 52230 52631 402 Locate
atpB gene − 52628 54124 1497 Locate
rbcL gene + 54907 56382 1476 Locate
accD gene + 57072 58538 1467 Locate
psaI gene + 59225 59335 111 Locate
ycf4 gene + 59771 60325 555 Locate
cemA gene + 60893 61582 690 Locate
petA gene + 61799 62761 963 Locate
psbJ gene − 63806 63928 123 Locate
psbL gene − 64066 64182 117 Locate
psbF gene − 64206 64325 120 Locate
psbE gene − 64340 64591 252 Locate
petL gene + 65519 65614 96 Locate
petG gene + 65789 65902 114 Locate
trnW-CCA gene − 66028 66101 74 Locate
trnP-UGG gene − 66271 66344 74 Locate
psaJ gene + 66619 66753 135 Locate
rpl33 gene + 67226 67426 201 Locate
rps18 gene + 67573 67878 306 Locate
rpl20 gene − 68058 68444 387 Locate
rps12 gene − 69211 69324 114 Locate
clpP gene − 69451 71315 1865 Locate
psbB gene + 71753 73279 1527 Locate
psbT gene + 73473 73580 108 Locate
psbN gene − 73641 73772 132 Locate
psbH gene + 73876 74097 222 Locate
petB gene + 74222 75600 1379 Locate
petD gene + 75795 77016 1222 Locate
rpoA gene − 77179 78192 1014 Locate
rps11 gene − 78264 78695 432 Locate
rpl36 gene − 78783 78896 114 Locate
infA gene − 78992 79225 234 Locate
rps8 gene − 79349 79762 414 Locate
rpl14 gene − 79953 80321 369 Locate
rpl16 gene − 80448 81754 1307 Locate
rps3 gene − 81901 82563 663 Locate
rpl22 gene − 82548 83012 465 Locate
rps19 gene − 83072 83344 273 Locate
rpl2 gene − 83403 84894 1492 Locate
rpl23 gene − 84913 85194 282 Locate
trnI-CAU gene − 85360 85433 74 Locate
ycf2 gene + 85522 92388 6867 Locate
ycf15 gene + 92482 92679 198 Locate
trnL-CAA gene − 92940 93020 81 Locate
ndhB gene − 93560 95717 2158 Locate
rps7 gene − 96046 96513 468 Locate
rps12 gene − 96567 97360 794 Locate
trnV-GAC gene + 98977 99048 72 Locate
rrn16 gene + 99276 100766 1491 Locate
trnI-GAU gene + 101056 102064 1009 Locate
trnA-UGC gene + 102129 103007 879 Locate
rrn23 gene + 103199 106007 2809 Locate
rrn4.5 gene + 106108 106210 103 Locate
rrn5 gene + 106466 106586 121 Locate
trnR-ACG gene + 106821 106894 74 Locate
trnN-GUU gene − 107461 107532 72 Locate
ndhF gene − 108922 111144 2223 Locate
rpl32 gene + 111649 111825 177 Locate
trnL-UAG gene + 112568 112647 80 Locate
ccsA gene + 112732 113703 972 Locate
ndhD gene − 113886 115388 1503 Locate
psaC gene − 115505 115750 246 Locate
ndhE gene − 116013 116315 303 Locate
ndhG gene − 116540 117070 531 Locate
ndhI gene − 117449 117946 498 Locate
ndhA gene − 118027 120186 2160 Locate
ndhH gene − 120188 121369 1182 Locate
rps15 gene − 121470 121805 336 Locate
ycf1 gene − 122123 127675 5553 Locate
trnN-GUU gene + 128001 128072 72 Locate
trnR-ACG gene − 128639 128712 74 Locate
rrn5 gene − 128947 129067 121 Locate
rrn4.5 gene − 129323 129425 103 Locate
rrn23 gene − 129526 132334 2809 Locate
trnA-UGC gene − 132526 133404 879 Locate
trnI-GAU gene − 133469 134477 1009 Locate
rrn16 gene − 134767 136257 1491 Locate
trnV-GAC gene − 136485 136556 72 Locate
rps12 gene + 138173 138966 794 Locate
rps7 gene + 139020 139487 468 Locate
ndhB gene + 139816 141973 2158 Locate
trnL-CAA gene + 142513 142593 81 Locate
ycf15 gene − 142854 143051 198 Locate
ycf2 gene − 143145 150011 6867 Locate
trnI-CAU gene + 150100 150173 74 Locate
rpl23 gene + 150339 150620 282 Locate
rpl2 gene + 150639 152130 1492 Locate
Status Available
Accession NC_085355.1
Length 152,227 bp
GC content 38.4%
Annotated genes 132
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 14 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources