Paraphlomis jinggangshanensis chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · OR565956.1 · 2–76 bp · −
psbA · OR565956.1 · 308–1,366 bp · −
trnK-UUU · OR565956.1 · 1,599–4,188 bp · −
matK · OR565956.1 · 1,904–3,439 bp · −
rps16 · OR565956.1 · 5,115–6,255 bp · −
trnQ-UUG · OR565956.1 · 7,203–7,275 bp · −
trnS-GCU · OR565956.1 · 8,402–8,489 bp · −
atpA · OR565956.1 · 10,296–11,819 bp · −
atpF · OR565956.1 · 11,907–13,127 bp · −
atpH · OR565956.1 · 13,482–13,727 bp · −
atpI · OR565956.1 · 14,722–15,465 bp · −
rps2 · OR565956.1 · 15,696–16,406 bp · −
rpoC2 · OR565956.1 · 16,729–20,814 bp · −
rpoC1 · OR565956.1 · 20,969–23,800 bp · −
rpoB · OR565956.1 · 23,827–27,039 bp · −
psbM · OR565956.1 · 29,930–30,034 bp · −
trnD-GUC · OR565956.1 · 30,558–30,631 bp · −
trnY-GUA · OR565956.1 · 30,746–30,829 bp · −
trnE-UUC · OR565956.1 · 30,889–30,958 bp · −
trnS-UGA · OR565956.1 · 35,504–35,596 bp · −
trnfM-CAU · OR565956.1 · 36,559–36,632 bp · −
rps14 · OR565956.1 · 36,782–37,084 bp · −
psaB · OR565956.1 · 37,212–39,416 bp · −
psaA · OR565956.1 · 39,442–41,694 bp · −
ycf3 · OR565956.1 · 42,422–44,380 bp · −
rps4 · OR565956.1 · 45,095–45,700 bp · −
trnT-UGU · OR565956.1 · 46,091–46,163 bp · −
ndhJ · OR565956.1 · 48,442–48,918 bp · −
ndhK · OR565956.1 · 49,019–49,696 bp · −
ndhC · OR565956.1 · 49,750–50,112 bp · −
trnV-UAC · OR565956.1 · 51,078–51,724 bp · −
atpE · OR565956.1 · 52,210–52,611 bp · −
atpB · OR565956.1 · 52,608–54,098 bp · −
psbJ · OR565956.1 · 63,788–63,910 bp · −
psbL · OR565956.1 · 64,048–64,164 bp · −
psbF · OR565956.1 · 64,188–64,307 bp · −
psbE · OR565956.1 · 64,322–64,573 bp · −
trnW-CCA · OR565956.1 · 66,010–66,083 bp · −
trnP-UGG · OR565956.1 · 66,253–66,326 bp · −
rpl20 · OR565956.1 · 68,033–68,419 bp · −
rps12 · OR565956.1 · 69,186–69,299 bp · −
rps12 · OR565956.1 · 96,542–97,335 bp · −
clpP · OR565956.1 · 69,426–71,290 bp · −
psbN · OR565956.1 · 73,614–73,745 bp · −
rpoA · OR565956.1 · 77,152–78,165 bp · −
rps11 · OR565956.1 · 78,237–78,668 bp · −
rpl36 · OR565956.1 · 78,756–78,869 bp · −
infA · OR565956.1 · 78,965–79,198 bp · −
rps8 · OR565956.1 · 79,324–79,737 bp · −
rpl14 · OR565956.1 · 79,928–80,296 bp · −
rpl16 · OR565956.1 · 80,423–81,729 bp · −
rps3 · OR565956.1 · 81,876–82,538 bp · −
rpl22 · OR565956.1 · 82,523–82,987 bp · −
rps19 · OR565956.1 · 83,047–83,325 bp · −
rpl2 · OR565956.1 · 83,378–84,869 bp · −
rpl23 · OR565956.1 · 84,888–85,169 bp · −
trnI-CAU · OR565956.1 · 85,335–85,408 bp · −
trnL-CAA · OR565956.1 · 92,915–92,995 bp · −
ndhB · OR565956.1 · 93,535–95,746 bp · −
rps7 · OR565956.1 · 96,021–96,488 bp · −
trnN-GUU · OR565956.1 · 107,436–107,507 bp · −
ndhF · OR565956.1 · 108,897–111,119 bp · −
ndhD · OR565956.1 · 113,842–115,362 bp · −
psaC · OR565956.1 · 115,460–115,705 bp · −
ndhE · OR565956.1 · 115,968–116,273 bp · −
ndhG · OR565956.1 · 116,495–117,025 bp · −
ndhI · OR565956.1 · 117,404–117,901 bp · −
ndhA · OR565956.1 · 117,988–120,156 bp · −
ndhH · OR565956.1 · 120,158–121,339 bp · −
rps15 · OR565956.1 · 121,440–121,712 bp · −
ycf1 · OR565956.1 · 122,093–127,645 bp · −
trnR-ACG · OR565956.1 · 128,610–128,682 bp · −
rrn5 · OR565956.1 · 128,917–129,037 bp · −
rrn4.5 · OR565956.1 · 129,293–129,395 bp · −
rrn23 · OR565956.1 · 129,494–132,303 bp · −
trnA-UGC · OR565956.1 · 132,496–133,374 bp · −
trnI-GAU · OR565956.1 · 133,439–134,447 bp · −
rrn16 · OR565956.1 · 134,737–136,227 bp · −
trnV-GAC · OR565956.1 · 136,455–136,526 bp · −
ycf15 · OR565956.1 · 142,824–143,072 bp · −
ycf2 · OR565956.1 · 143,115–149,981 bp · −
psbK · OR565956.1 · 7,612–7,797 bp · +
psbI · OR565956.1 · 8,168–8,278 bp · +
trnG-UCC · OR565956.1 · 9,192–9,951 bp · +
trnR-UCU · OR565956.1 · 10,128–10,199 bp · +
trnC-GCA · OR565956.1 · 28,141–28,221 bp · +
petN · OR565956.1 · 29,047–29,142 bp · +
trnT-GGU · OR565956.1 · 31,521–31,591 bp · +
psbD · OR565956.1 · 32,843–33,904 bp · +
psbC · OR565956.1 · 33,852–35,273 bp · +
psbZ · OR565956.1 · 35,921–36,109 bp · +
trnG-GCC · OR565956.1 · 36,339–36,409 bp · +
trnS-GGA · OR565956.1 · 44,710–44,796 bp · +
trnL-UAA · OR565956.1 · 46,842–47,415 bp · +
trnF-GAA · OR565956.1 · 47,707–47,779 bp · +
trnM-CAU · OR565956.1 · 51,913–51,985 bp · +
rbcL · OR565956.1 · 54,908–56,362 bp · +
accD · OR565956.1 · 57,052–58,518 bp · +
psaI · OR565956.1 · 59,205–59,315 bp · +
ycf4 · OR565956.1 · 59,751–60,305 bp · +
cemA · OR565956.1 · 60,873–61,562 bp · +
petA · OR565956.1 · 61,779–62,741 bp · +
petL · OR565956.1 · 65,501–65,596 bp · +
petG · OR565956.1 · 65,771–65,884 bp · +
psaJ · OR565956.1 · 66,601–66,735 bp · +
rpl33 · OR565956.1 · 67,201–67,401 bp · +
rps18 · OR565956.1 · 67,548–67,853 bp · +
rps12 · OR565956.1 · 138,143–138,936 bp · +
psbB · OR565956.1 · 71,728–73,254 bp · +
psbT · OR565956.1 · 73,446–73,553 bp · +
psbH · OR565956.1 · 73,849–74,070 bp · +
petB · OR565956.1 · 74,195–75,573 bp · +
petD · OR565956.1 · 75,768–76,989 bp · +
ycf2 · OR565956.1 · 85,497–92,363 bp · +
ycf15 · OR565956.1 · 92,406–92,654 bp · +
trnV-GAC · OR565956.1 · 98,952–99,023 bp · +
rrn16 · OR565956.1 · 99,251–100,741 bp · +
trnI-GAU · OR565956.1 · 101,031–102,039 bp · +
trnA-UGC · OR565956.1 · 102,104–102,982 bp · +
rrn23 · OR565956.1 · 103,175–105,984 bp · +
rrn4.5 · OR565956.1 · 106,083–106,185 bp · +
rrn5 · OR565956.1 · 106,441–106,561 bp · +
trnR-ACG · OR565956.1 · 106,796–106,868 bp · +
rpl32 · OR565956.1 · 111,624–111,800 bp · +
trnL-UAG · OR565956.1 · 112,524–112,603 bp · +
ccsA · OR565956.1 · 112,688–113,659 bp · +
trnN-GUU · OR565956.1 · 127,971–128,042 bp · +
rps7 · OR565956.1 · 138,990–139,457 bp · +
ndhB · OR565956.1 · 139,732–141,943 bp · +
trnL-CAA · OR565956.1 · 142,483–142,563 bp · +
trnI-CAU · OR565956.1 · 150,070–150,143 bp · +
rpl23 · OR565956.1 · 150,309–150,590 bp · +
rpl2 · OR565956.1 · 150,609–152,100 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Paraphlomis jinggangshanensis
ANNOTATED PLASTOME
OR565956.1
152,194 bp · 132 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38048 76097 114146 152194 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
133 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 2 76 75 Locate
psbA gene − 308 1366 1059 Locate
trnK-UUU gene − 1599 4188 2590 Locate
matK gene − 1904 3439 1536 Locate
rps16 gene − 5115 6255 1141 Locate
trnQ-UUG gene − 7203 7275 73 Locate
psbK gene + 7612 7797 186 Locate
psbI gene + 8168 8278 111 Locate
trnS-GCU gene − 8402 8489 88 Locate
trnG-UCC gene + 9192 9951 760 Locate
trnR-UCU gene + 10128 10199 72 Locate
atpA gene − 10296 11819 1524 Locate
atpF gene − 11907 13127 1221 Locate
atpH gene − 13482 13727 246 Locate
atpI gene − 14722 15465 744 Locate
rps2 gene − 15696 16406 711 Locate
rpoC2 gene − 16729 20814 4086 Locate
rpoC1 gene − 20969 23800 2832 Locate
rpoB gene − 23827 27039 3213 Locate
trnC-GCA gene + 28141 28221 81 Locate
petN gene + 29047 29142 96 Locate
psbM gene − 29930 30034 105 Locate
trnD-GUC gene − 30558 30631 74 Locate
trnY-GUA gene − 30746 30829 84 Locate
trnE-UUC gene − 30889 30958 70 Locate
trnT-GGU gene + 31521 31591 71 Locate
psbD gene + 32843 33904 1062 Locate
psbC gene + 33852 35273 1422 Locate
trnS-UGA gene − 35504 35596 93 Locate
psbZ gene + 35921 36109 189 Locate
trnG-GCC gene + 36339 36409 71 Locate
trnfM-CAU gene − 36559 36632 74 Locate
rps14 gene − 36782 37084 303 Locate
psaB gene − 37212 39416 2205 Locate
psaA gene − 39442 41694 2253 Locate
ycf3 gene − 42422 44380 1959 Locate
trnS-GGA gene + 44710 44796 87 Locate
rps4 gene − 45095 45700 606 Locate
trnT-UGU gene − 46091 46163 73 Locate
trnL-UAA gene + 46842 47415 574 Locate
trnF-GAA gene + 47707 47779 73 Locate
ndhJ gene − 48442 48918 477 Locate
ndhK gene − 49019 49696 678 Locate
ndhC gene − 49750 50112 363 Locate
trnV-UAC gene − 51078 51724 647 Locate
trnM-CAU gene + 51913 51985 73 Locate
atpE gene − 52210 52611 402 Locate
atpB gene − 52608 54098 1491 Locate
rbcL gene + 54908 56362 1455 Locate
accD gene + 57052 58518 1467 Locate
psaI gene + 59205 59315 111 Locate
ycf4 gene + 59751 60305 555 Locate
cemA gene + 60873 61562 690 Locate
petA gene + 61779 62741 963 Locate
psbJ gene − 63788 63910 123 Locate
psbL gene − 64048 64164 117 Locate
psbF gene − 64188 64307 120 Locate
psbE gene − 64322 64573 252 Locate
petL gene + 65501 65596 96 Locate
petG gene + 65771 65884 114 Locate
trnW-CCA gene − 66010 66083 74 Locate
trnP-UGG gene − 66253 66326 74 Locate
psaJ gene + 66601 66735 135 Locate
rpl33 gene + 67201 67401 201 Locate
rps18 gene + 67548 67853 306 Locate
rpl20 gene − 68033 68419 387 Locate
rps12 gene − 69186 69299 114 Locate
clpP gene − 69426 71290 1865 Locate
psbB gene + 71728 73254 1527 Locate
psbT gene + 73446 73553 108 Locate
psbN gene − 73614 73745 132 Locate
psbH gene + 73849 74070 222 Locate
petB gene + 74195 75573 1379 Locate
petD gene + 75768 76989 1222 Locate
rpoA gene − 77152 78165 1014 Locate
rps11 gene − 78237 78668 432 Locate
rpl36 gene − 78756 78869 114 Locate
infA gene − 78965 79198 234 Locate
rps8 gene − 79324 79737 414 Locate
rpl14 gene − 79928 80296 369 Locate
rpl16 gene − 80423 81729 1307 Locate
rps3 gene − 81876 82538 663 Locate
rpl22 gene − 82523 82987 465 Locate
rps19 gene − 83047 83325 279 Locate
rpl2 gene − 83378 84869 1492 Locate
rpl23 gene − 84888 85169 282 Locate
trnI-CAU gene − 85335 85408 74 Locate
ycf2 gene + 85497 92363 6867 Locate
ycf15 gene + 92406 92654 249 Locate
trnL-CAA gene − 92915 92995 81 Locate
ndhB gene − 93535 95746 2212 Locate
rps7 gene − 96021 96488 468 Locate
rps12 gene − 96542 97335 794 Locate
trnV-GAC gene + 98952 99023 72 Locate
rrn16 gene + 99251 100741 1491 Locate
trnI-GAU gene + 101031 102039 1009 Locate
trnA-UGC gene + 102104 102982 879 Locate
rrn23 gene + 103175 105984 2810 Locate
rrn4.5 gene + 106083 106185 103 Locate
rrn5 gene + 106441 106561 121 Locate
trnR-ACG gene + 106796 106868 73 Locate
trnN-GUU gene − 107436 107507 72 Locate
ndhF gene − 108897 111119 2223 Locate
rpl32 gene + 111624 111800 177 Locate
trnL-UAG gene + 112524 112603 80 Locate
ccsA gene + 112688 113659 972 Locate
ndhD gene − 113842 115362 1521 Locate
psaC gene − 115460 115705 246 Locate
ndhE gene − 115968 116273 306 Locate
ndhG gene − 116495 117025 531 Locate
ndhI gene − 117404 117901 498 Locate
ndhA gene − 117988 120156 2169 Locate
ndhH gene − 120158 121339 1182 Locate
rps15 gene − 121440 121712 273 Locate
ycf1 gene − 122093 127645 5553 Locate
trnN-GUU gene + 127971 128042 72 Locate
trnR-ACG gene − 128610 128682 73 Locate
rrn5 gene − 128917 129037 121 Locate
rrn4.5 gene − 129293 129395 103 Locate
rrn23 gene − 129494 132303 2810 Locate
trnA-UGC gene − 132496 133374 879 Locate
trnI-GAU gene − 133439 134447 1009 Locate
rrn16 gene − 134737 136227 1491 Locate
trnV-GAC gene − 136455 136526 72 Locate
rps12 gene + 138143 138936 794 Locate
rps7 gene + 138990 139457 468 Locate
ndhB gene + 139732 141943 2212 Locate
trnL-CAA gene + 142483 142563 81 Locate
ycf15 gene − 142824 143072 249 Locate
ycf2 gene − 143115 149981 6867 Locate
trnI-CAU gene + 150070 150143 74 Locate
rpl23 gene + 150309 150590 282 Locate
rpl2 gene + 150609 152100 1492 Locate
Status Available
Accession OR565956.1
Length 152,194 bp
GC content 38.4%
Annotated genes 132
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 14 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources