Paraphlomis kuankuoshuiensis chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · OR565939.1 · 2–76 bp · −
psbA · OR565939.1 · 315–1,373 bp · −
trnK-UUU · OR565939.1 · 1,606–4,193 bp · −
matK · OR565939.1 · 1,910–3,445 bp · −
rps16 · OR565939.1 · 5,115–6,262 bp · −
trnQ-UUG · OR565939.1 · 7,205–7,276 bp · −
trnS-GCU · OR565939.1 · 8,415–8,502 bp · −
atpA · OR565939.1 · 10,260–11,783 bp · −
atpF · OR565939.1 · 11,871–13,084 bp · −
atpH · OR565939.1 · 13,451–13,696 bp · −
atpI · OR565939.1 · 14,696–15,439 bp · −
rps2 · OR565939.1 · 15,670–16,380 bp · −
rpoC2 · OR565939.1 · 16,680–20,789 bp · −
rpoC1 · OR565939.1 · 20,944–23,775 bp · −
rpoB · OR565939.1 · 23,802–27,014 bp · −
psbM · OR565939.1 · 29,909–30,013 bp · −
trnD-GUC · OR565939.1 · 30,537–30,610 bp · −
trnY-GUA · OR565939.1 · 30,726–30,809 bp · −
trnE-UUC · OR565939.1 · 30,869–30,938 bp · −
trnS-UGA · OR565939.1 · 35,512–35,604 bp · −
trnfM-CAU · OR565939.1 · 36,573–36,646 bp · −
rps14 · OR565939.1 · 36,796–37,098 bp · −
psaB · OR565939.1 · 37,226–39,430 bp · −
psaA · OR565939.1 · 39,456–41,708 bp · −
ycf3 · OR565939.1 · 42,437–44,391 bp · −
rps4 · OR565939.1 · 45,105–45,710 bp · −
trnT-UGU · OR565939.1 · 46,101–46,173 bp · −
ndhJ · OR565939.1 · 48,451–48,927 bp · −
ndhK · OR565939.1 · 49,028–49,705 bp · −
ndhC · OR565939.1 · 49,759–50,121 bp · −
trnV-UAC · OR565939.1 · 51,081–51,733 bp · −
atpE · OR565939.1 · 52,181–52,582 bp · −
atpB · OR565939.1 · 52,579–54,069 bp · −
psbJ · OR565939.1 · 63,692–63,814 bp · −
psbL · OR565939.1 · 63,952–64,068 bp · −
psbF · OR565939.1 · 64,092–64,211 bp · −
psbE · OR565939.1 · 64,226–64,477 bp · −
trnW-CCA · OR565939.1 · 65,913–65,986 bp · −
trnP-UGG · OR565939.1 · 66,156–66,229 bp · −
rpl20 · OR565939.1 · 67,980–68,366 bp · −
rps12 · OR565939.1 · 69,133–69,246 bp · −
rps12 · OR565939.1 · 96,493–97,286 bp · −
clpP · OR565939.1 · 69,374–71,238 bp · −
psbN · OR565939.1 · 73,563–73,694 bp · −
rpoA · OR565939.1 · 77,113–78,126 bp · −
rps11 · OR565939.1 · 78,198–78,629 bp · −
rpl36 · OR565939.1 · 78,717–78,830 bp · −
infA · OR565939.1 · 78,926–79,159 bp · −
rps8 · OR565939.1 · 79,284–79,697 bp · −
rpl14 · OR565939.1 · 79,889–80,257 bp · −
rpl16 · OR565939.1 · 80,384–81,690 bp · −
rps3 · OR565939.1 · 81,837–82,493 bp · −
rpl22 · OR565939.1 · 82,478–82,942 bp · −
rps19 · OR565939.1 · 83,002–83,280 bp · −
rpl2 · OR565939.1 · 83,338–84,829 bp · −
rpl23 · OR565939.1 · 84,848–85,129 bp · −
trnI-CAU · OR565939.1 · 85,295–85,368 bp · −
trnL-CAA · OR565939.1 · 92,875–92,955 bp · −
ndhB · OR565939.1 · 93,495–95,697 bp · −
rps7 · OR565939.1 · 95,972–96,439 bp · −
trnN-GUU · OR565939.1 · 107,387–107,458 bp · −
ndhF · OR565939.1 · 108,848–111,070 bp · −
ndhD · OR565939.1 · 113,793–115,313 bp · −
psaC · OR565939.1 · 115,411–115,656 bp · −
ndhE · OR565939.1 · 115,919–116,224 bp · −
ndhG · OR565939.1 · 116,446–116,976 bp · −
ndhI · OR565939.1 · 117,355–117,861 bp · −
ndhA · OR565939.1 · 117,948–120,113 bp · −
ndhH · OR565939.1 · 120,115–121,296 bp · −
rps15 · OR565939.1 · 121,397–121,669 bp · −
ycf1 · OR565939.1 · 122,050–127,596 bp · −
trnR-ACG · OR565939.1 · 128,560–128,633 bp · −
rrn5 · OR565939.1 · 128,868–128,988 bp · −
rrn4.5 · OR565939.1 · 129,244–129,346 bp · −
rrn23 · OR565939.1 · 129,445–132,254 bp · −
trnA-UGC · OR565939.1 · 132,447–133,325 bp · −
trnI-GAU · OR565939.1 · 133,390–134,398 bp · −
rrn16 · OR565939.1 · 134,688–136,178 bp · −
trnV-GAC · OR565939.1 · 136,406–136,477 bp · −
ycf15 · OR565939.1 · 142,766–143,029 bp · −
ycf2 · OR565939.1 · 143,057–149,923 bp · −
psbK · OR565939.1 · 7,613–7,798 bp · +
psbI · OR565939.1 · 8,180–8,290 bp · +
trnG-UCC · OR565939.1 · 9,181–9,942 bp · +
trnR-UCU · OR565939.1 · 10,092–10,163 bp · +
trnC-GCA · OR565939.1 · 28,122–28,197 bp · +
petN · OR565939.1 · 29,033–29,122 bp · +
trnT-GGU · OR565939.1 · 31,529–31,599 bp · +
psbD · OR565939.1 · 32,851–33,912 bp · +
psbC · OR565939.1 · 33,860–35,281 bp · +
psbZ · OR565939.1 · 35,935–36,123 bp · +
trnG-GCC · OR565939.1 · 36,353–36,423 bp · +
trnS-GGA · OR565939.1 · 44,721–44,807 bp · +
trnL-UAA · OR565939.1 · 46,851–47,424 bp · +
trnF-GAA · OR565939.1 · 47,716–47,788 bp · +
trnM-CAU · OR565939.1 · 51,922–51,994 bp · +
rbcL · OR565939.1 · 55,245–56,315 bp · +
accD · OR565939.1 · 57,005–58,471 bp · +
psaI · OR565939.1 · 59,158–59,268 bp · +
ycf4 · OR565939.1 · 59,704–60,258 bp · +
cemA · OR565939.1 · 60,814–61,503 bp · +
petA · OR565939.1 · 61,720–62,682 bp · +
petL · OR565939.1 · 65,404–65,499 bp · +
petG · OR565939.1 · 65,674–65,787 bp · +
psaJ · OR565939.1 · 66,504–66,638 bp · +
rpl33 · OR565939.1 · 67,111–67,311 bp · +
rps18 · OR565939.1 · 67,458–67,763 bp · +
rps12 · OR565939.1 · 138,094–138,887 bp · +
psbB · OR565939.1 · 71,676–73,202 bp · +
psbT · OR565939.1 · 73,395–73,502 bp · +
psbH · OR565939.1 · 73,798–74,019 bp · +
petB · OR565939.1 · 74,144–75,534 bp · +
petD · OR565939.1 · 75,729–76,950 bp · +
ycf2 · OR565939.1 · 85,457–92,323 bp · +
ycf15 · OR565939.1 · 92,366–92,614 bp · +
trnV-GAC · OR565939.1 · 98,903–98,974 bp · +
rrn16 · OR565939.1 · 99,202–100,692 bp · +
trnI-GAU · OR565939.1 · 100,982–101,990 bp · +
trnA-UGC · OR565939.1 · 102,055–102,933 bp · +
rrn23 · OR565939.1 · 103,126–105,935 bp · +
rrn4.5 · OR565939.1 · 106,034–106,136 bp · +
rrn5 · OR565939.1 · 106,392–106,512 bp · +
trnR-ACG · OR565939.1 · 106,747–106,820 bp · +
rpl32 · OR565939.1 · 111,576–111,752 bp · +
trnL-UAG · OR565939.1 · 112,475–112,554 bp · +
ccsA · OR565939.1 · 112,639–113,610 bp · +
trnN-GUU · OR565939.1 · 127,922–127,993 bp · +
rps7 · OR565939.1 · 138,941–139,408 bp · +
ndhB · OR565939.1 · 139,683–141,885 bp · +
trnL-CAA · OR565939.1 · 142,425–142,505 bp · +
trnI-CAU · OR565939.1 · 150,012–150,085 bp · +
rpl23 · OR565939.1 · 150,251–150,532 bp · +
rpl2 · OR565939.1 · 150,551–152,042 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Paraphlomis kuankuoshuiensis
ANNOTATED PLASTOME
OR565939.1
152,141 bp · 132 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38035 76070 114106 152141 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
133 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 2 76 75 Locate
psbA gene − 315 1373 1059 Locate
trnK-UUU gene − 1606 4193 2588 Locate
matK gene − 1910 3445 1536 Locate
rps16 gene − 5115 6262 1148 Locate
trnQ-UUG gene − 7205 7276 72 Locate
psbK gene + 7613 7798 186 Locate
psbI gene + 8180 8290 111 Locate
trnS-GCU gene − 8415 8502 88 Locate
trnG-UCC gene + 9181 9942 762 Locate
trnR-UCU gene + 10092 10163 72 Locate
atpA gene − 10260 11783 1524 Locate
atpF gene − 11871 13084 1214 Locate
atpH gene − 13451 13696 246 Locate
atpI gene − 14696 15439 744 Locate
rps2 gene − 15670 16380 711 Locate
rpoC2 gene − 16680 20789 4110 Locate
rpoC1 gene − 20944 23775 2832 Locate
rpoB gene − 23802 27014 3213 Locate
trnC-GCA gene + 28122 28197 76 Locate
petN gene + 29033 29122 90 Locate
psbM gene − 29909 30013 105 Locate
trnD-GUC gene − 30537 30610 74 Locate
trnY-GUA gene − 30726 30809 84 Locate
trnE-UUC gene − 30869 30938 70 Locate
trnT-GGU gene + 31529 31599 71 Locate
psbD gene + 32851 33912 1062 Locate
psbC gene + 33860 35281 1422 Locate
trnS-UGA gene − 35512 35604 93 Locate
psbZ gene + 35935 36123 189 Locate
trnG-GCC gene + 36353 36423 71 Locate
trnfM-CAU gene − 36573 36646 74 Locate
rps14 gene − 36796 37098 303 Locate
psaB gene − 37226 39430 2205 Locate
psaA gene − 39456 41708 2253 Locate
ycf3 gene − 42437 44391 1955 Locate
trnS-GGA gene + 44721 44807 87 Locate
rps4 gene − 45105 45710 606 Locate
trnT-UGU gene − 46101 46173 73 Locate
trnL-UAA gene + 46851 47424 574 Locate
trnF-GAA gene + 47716 47788 73 Locate
ndhJ gene − 48451 48927 477 Locate
ndhK gene − 49028 49705 678 Locate
ndhC gene − 49759 50121 363 Locate
trnV-UAC gene − 51081 51733 653 Locate
trnM-CAU gene + 51922 51994 73 Locate
atpE gene − 52181 52582 402 Locate
atpB gene − 52579 54069 1491 Locate
rbcL gene + 55245 56315 1071 Locate
accD gene + 57005 58471 1467 Locate
psaI gene + 59158 59268 111 Locate
ycf4 gene + 59704 60258 555 Locate
cemA gene + 60814 61503 690 Locate
petA gene + 61720 62682 963 Locate
psbJ gene − 63692 63814 123 Locate
psbL gene − 63952 64068 117 Locate
psbF gene − 64092 64211 120 Locate
psbE gene − 64226 64477 252 Locate
petL gene + 65404 65499 96 Locate
petG gene + 65674 65787 114 Locate
trnW-CCA gene − 65913 65986 74 Locate
trnP-UGG gene − 66156 66229 74 Locate
psaJ gene + 66504 66638 135 Locate
rpl33 gene + 67111 67311 201 Locate
rps18 gene + 67458 67763 306 Locate
rpl20 gene − 67980 68366 387 Locate
rps12 gene − 69133 69246 114 Locate
clpP gene − 69374 71238 1865 Locate
psbB gene + 71676 73202 1527 Locate
psbT gene + 73395 73502 108 Locate
psbN gene − 73563 73694 132 Locate
psbH gene + 73798 74019 222 Locate
petB gene + 74144 75534 1391 Locate
petD gene + 75729 76950 1222 Locate
rpoA gene − 77113 78126 1014 Locate
rps11 gene − 78198 78629 432 Locate
rpl36 gene − 78717 78830 114 Locate
infA gene − 78926 79159 234 Locate
rps8 gene − 79284 79697 414 Locate
rpl14 gene − 79889 80257 369 Locate
rpl16 gene − 80384 81690 1307 Locate
rps3 gene − 81837 82493 657 Locate
rpl22 gene − 82478 82942 465 Locate
rps19 gene − 83002 83280 279 Locate
rpl2 gene − 83338 84829 1492 Locate
rpl23 gene − 84848 85129 282 Locate
trnI-CAU gene − 85295 85368 74 Locate
ycf2 gene + 85457 92323 6867 Locate
ycf15 gene + 92366 92614 249 Locate
trnL-CAA gene − 92875 92955 81 Locate
ndhB gene − 93495 95697 2203 Locate
rps7 gene − 95972 96439 468 Locate
rps12 gene − 96493 97286 794 Locate
trnV-GAC gene + 98903 98974 72 Locate
rrn16 gene + 99202 100692 1491 Locate
trnI-GAU gene + 100982 101990 1009 Locate
trnA-UGC gene + 102055 102933 879 Locate
rrn23 gene + 103126 105935 2810 Locate
rrn4.5 gene + 106034 106136 103 Locate
rrn5 gene + 106392 106512 121 Locate
trnR-ACG gene + 106747 106820 74 Locate
trnN-GUU gene − 107387 107458 72 Locate
ndhF gene − 108848 111070 2223 Locate
rpl32 gene + 111576 111752 177 Locate
trnL-UAG gene + 112475 112554 80 Locate
ccsA gene + 112639 113610 972 Locate
ndhD gene − 113793 115313 1521 Locate
psaC gene − 115411 115656 246 Locate
ndhE gene − 115919 116224 306 Locate
ndhG gene − 116446 116976 531 Locate
ndhI gene − 117355 117861 507 Locate
ndhA gene − 117948 120113 2166 Locate
ndhH gene − 120115 121296 1182 Locate
rps15 gene − 121397 121669 273 Locate
ycf1 gene − 122050 127596 5547 Locate
trnN-GUU gene + 127922 127993 72 Locate
trnR-ACG gene − 128560 128633 74 Locate
rrn5 gene − 128868 128988 121 Locate
rrn4.5 gene − 129244 129346 103 Locate
rrn23 gene − 129445 132254 2810 Locate
trnA-UGC gene − 132447 133325 879 Locate
trnI-GAU gene − 133390 134398 1009 Locate
rrn16 gene − 134688 136178 1491 Locate
trnV-GAC gene − 136406 136477 72 Locate
rps12 gene + 138094 138887 794 Locate
rps7 gene + 138941 139408 468 Locate
ndhB gene + 139683 141885 2203 Locate
trnL-CAA gene + 142425 142505 81 Locate
ycf15 gene − 142766 143029 264 Locate
ycf2 gene − 143057 149923 6867 Locate
trnI-CAU gene + 150012 150085 74 Locate
rpl23 gene + 150251 150532 282 Locate
rpl2 gene + 150551 152042 1492 Locate
Status Available
Accession OR565939.1
Length 152,141 bp
GC content 38.4%
Annotated genes 132
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 14 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources