Paraphlomis lancidentata chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · OR565935.1 · 2–76 bp · −
psbA · OR565935.1 · 307–1,365 bp · −
trnK-UUU · OR565935.1 · 1,598–4,181 bp · −
matK · OR565935.1 · 1,897–3,432 bp · −
rps16 · OR565935.1 · 5,109–6,254 bp · −
trnQ-UUG · OR565935.1 · 7,203–7,274 bp · −
trnS-GCU · OR565935.1 · 8,408–8,495 bp · −
atpA · OR565935.1 · 10,282–11,805 bp · −
atpF · OR565935.1 · 11,893–13,113 bp · −
atpH · OR565935.1 · 13,479–13,724 bp · −
atpI · OR565935.1 · 14,794–15,537 bp · −
rps2 · OR565935.1 · 15,768–16,478 bp · −
rpoC2 · OR565935.1 · 16,699–20,886 bp · −
rpoC1 · OR565935.1 · 21,041–23,871 bp · −
rpoB · OR565935.1 · 23,898–27,110 bp · −
psbM · OR565935.1 · 30,002–30,106 bp · −
trnD-GUC · OR565935.1 · 30,630–30,703 bp · −
trnY-GUA · OR565935.1 · 30,818–30,901 bp · −
trnE-UUC · OR565935.1 · 30,961–31,033 bp · −
trnS-UGA · OR565935.1 · 35,578–35,670 bp · −
trnfM-CAU · OR565935.1 · 36,620–36,693 bp · −
rps14 · OR565935.1 · 36,843–37,145 bp · −
psaB · OR565935.1 · 37,273–39,477 bp · −
psaA · OR565935.1 · 39,503–41,755 bp · −
ycf3 · OR565935.1 · 42,483–44,436 bp · −
rps4 · OR565935.1 · 45,137–45,742 bp · −
trnT-UGU · OR565935.1 · 46,133–46,205 bp · −
ndhJ · OR565935.1 · 48,485–48,979 bp · −
ndhK · OR565935.1 · 49,062–49,739 bp · −
ndhC · OR565935.1 · 49,793–50,155 bp · −
trnV-UAC · OR565935.1 · 51,114–51,766 bp · −
atpE · OR565935.1 · 52,245–52,646 bp · −
atpB · OR565935.1 · 52,643–54,139 bp · −
psbJ · OR565935.1 · 63,787–63,909 bp · −
psbL · OR565935.1 · 64,047–64,163 bp · −
psbF · OR565935.1 · 64,187–64,306 bp · −
psbE · OR565935.1 · 64,321–64,572 bp · −
trnW-CCA · OR565935.1 · 66,012–66,085 bp · −
trnP-UGG · OR565935.1 · 66,255–66,328 bp · −
rpl20 · OR565935.1 · 68,041–68,427 bp · −
rps12 · OR565935.1 · 69,194–69,307 bp · −
rps12 · OR565935.1 · 96,577–97,370 bp · −
clpP · OR565935.1 · 69,434–71,298 bp · −
psbN · OR565935.1 · 73,617–73,748 bp · −
rpoA · OR565935.1 · 77,147–78,160 bp · −
rps11 · OR565935.1 · 78,232–78,687 bp · −
rpl36 · OR565935.1 · 78,775–78,888 bp · −
infA · OR565935.1 · 78,984–79,217 bp · −
rps8 · OR565935.1 · 79,346–79,759 bp · −
rpl14 · OR565935.1 · 79,950–80,318 bp · −
rpl16 · OR565935.1 · 80,445–81,751 bp · −
rps3 · OR565935.1 · 81,898–82,560 bp · −
rpl22 · OR565935.1 · 82,545–83,009 bp · −
rps19 · OR565935.1 · 83,069–83,347 bp · −
rpl2 · OR565935.1 · 83,399–84,890 bp · −
rpl23 · OR565935.1 · 84,909–85,190 bp · −
trnI-CAU · OR565935.1 · 85,356–85,429 bp · −
trnL-CAA · OR565935.1 · 92,954–93,034 bp · −
ndhB · OR565935.1 · 93,570–95,781 bp · −
rps7 · OR565935.1 · 96,056–96,523 bp · −
trnN-GUU · OR565935.1 · 107,471–107,542 bp · −
ndhF · OR565935.1 · 108,932–111,148 bp · −
ndhD · OR565935.1 · 113,871–115,391 bp · −
psaC · OR565935.1 · 115,491–115,736 bp · −
ndhE · OR565935.1 · 115,999–116,304 bp · −
ndhG · OR565935.1 · 116,526–117,056 bp · −
ndhI · OR565935.1 · 117,435–117,941 bp · −
ndhA · OR565935.1 · 118,028–120,186 bp · −
ndhH · OR565935.1 · 120,188–121,369 bp · −
rps15 · OR565935.1 · 121,481–121,813 bp · −
ycf1 · OR565935.1 · 122,131–127,683 bp · −
trnR-ACG · OR565935.1 · 128,647–128,720 bp · −
rrn5 · OR565935.1 · 128,955–129,075 bp · −
rrn4.5 · OR565935.1 · 129,331–129,433 bp · −
rrn23 · OR565935.1 · 129,532–132,341 bp · −
trnA-UGC · OR565935.1 · 132,534–133,412 bp · −
trnI-GAU · OR565935.1 · 133,477–134,485 bp · −
rrn16 · OR565935.1 · 134,775–136,265 bp · −
trnV-GAC · OR565935.1 · 136,493–136,564 bp · −
ycf15 · OR565935.1 · 142,858–143,121 bp · −
ycf2 · OR565935.1 · 143,149–150,033 bp · −
psbK · OR565935.1 · 7,611–7,796 bp · +
psbI · OR565935.1 · 8,175–8,285 bp · +
trnG-UCC · OR565935.1 · 9,187–9,937 bp · +
trnR-UCU · OR565935.1 · 10,111–10,185 bp · +
trnC-GCA · OR565935.1 · 28,213–28,288 bp · +
petN · OR565935.1 · 29,119–29,214 bp · +
trnT-GGU · OR565935.1 · 31,593–31,663 bp · +
psbD · OR565935.1 · 32,915–33,976 bp · +
psbC · OR565935.1 · 33,924–35,345 bp · +
psbZ · OR565935.1 · 35,987–36,175 bp · +
trnG-GCC · OR565935.1 · 36,400–36,470 bp · +
trnS-GGA · OR565935.1 · 44,753–44,839 bp · +
trnL-UAA · OR565935.1 · 46,879–47,452 bp · +
trnF-GAA · OR565935.1 · 47,744–47,816 bp · +
trnM-CAU · OR565935.1 · 51,955–52,027 bp · +
rbcL · OR565935.1 · 54,921–56,375 bp · +
accD · OR565935.1 · 57,061–58,527 bp · +
psaI · OR565935.1 · 59,216–59,326 bp · +
ycf4 · OR565935.1 · 59,757–60,311 bp · +
cemA · OR565935.1 · 60,872–61,561 bp · +
petA · OR565935.1 · 61,778–62,740 bp · +
petL · OR565935.1 · 65,503–65,598 bp · +
petG · OR565935.1 · 65,773–65,886 bp · +
psaJ · OR565935.1 · 66,603–66,737 bp · +
rpl33 · OR565935.1 · 67,209–67,409 bp · +
rps18 · OR565935.1 · 67,556–67,861 bp · +
rps12 · OR565935.1 · 138,181–138,974 bp · +
psbB · OR565935.1 · 71,736–73,262 bp · +
psbT · OR565935.1 · 73,449–73,556 bp · +
psbH · OR565935.1 · 73,852–74,073 bp · +
petB · OR565935.1 · 74,188–75,568 bp · +
petD · OR565935.1 · 75,763–76,984 bp · +
ycf2 · OR565935.1 · 85,518–92,402 bp · +
ycf15 · OR565935.1 · 92,445–92,693 bp · +
trnV-GAC · OR565935.1 · 98,987–99,058 bp · +
rrn16 · OR565935.1 · 99,286–100,776 bp · +
trnI-GAU · OR565935.1 · 101,066–102,074 bp · +
trnA-UGC · OR565935.1 · 102,139–103,017 bp · +
rrn23 · OR565935.1 · 103,210–106,019 bp · +
rrn4.5 · OR565935.1 · 106,118–106,220 bp · +
rrn5 · OR565935.1 · 106,476–106,596 bp · +
trnR-ACG · OR565935.1 · 106,831–106,904 bp · +
rpl32 · OR565935.1 · 111,653–111,829 bp · +
trnL-UAG · OR565935.1 · 112,553–112,632 bp · +
ccsA · OR565935.1 · 112,717–113,688 bp · +
trnN-GUU · OR565935.1 · 128,009–128,080 bp · +
rps7 · OR565935.1 · 139,028–139,495 bp · +
ndhB · OR565935.1 · 139,770–141,981 bp · +
trnL-CAA · OR565935.1 · 142,517–142,597 bp · +
trnI-CAU · OR565935.1 · 150,122–150,195 bp · +
rpl23 · OR565935.1 · 150,361–150,642 bp · +
rpl2 · OR565935.1 · 150,661–152,152 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Paraphlomis lancidentata
ANNOTATED PLASTOME
OR565935.1
152,245 bp · 132 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38061 76122 114184 152245 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
133 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 2 76 75 Locate
psbA gene − 307 1365 1059 Locate
trnK-UUU gene − 1598 4181 2584 Locate
matK gene − 1897 3432 1536 Locate
rps16 gene − 5109 6254 1146 Locate
trnQ-UUG gene − 7203 7274 72 Locate
psbK gene + 7611 7796 186 Locate
psbI gene + 8175 8285 111 Locate
trnS-GCU gene − 8408 8495 88 Locate
trnG-UCC gene + 9187 9937 751 Locate
trnR-UCU gene + 10111 10185 75 Locate
atpA gene − 10282 11805 1524 Locate
atpF gene − 11893 13113 1221 Locate
atpH gene − 13479 13724 246 Locate
atpI gene − 14794 15537 744 Locate
rps2 gene − 15768 16478 711 Locate
rpoC2 gene − 16699 20886 4188 Locate
rpoC1 gene − 21041 23871 2831 Locate
rpoB gene − 23898 27110 3213 Locate
trnC-GCA gene + 28213 28288 76 Locate
petN gene + 29119 29214 96 Locate
psbM gene − 30002 30106 105 Locate
trnD-GUC gene − 30630 30703 74 Locate
trnY-GUA gene − 30818 30901 84 Locate
trnE-UUC gene − 30961 31033 73 Locate
trnT-GGU gene + 31593 31663 71 Locate
psbD gene + 32915 33976 1062 Locate
psbC gene + 33924 35345 1422 Locate
trnS-UGA gene − 35578 35670 93 Locate
psbZ gene + 35987 36175 189 Locate
trnG-GCC gene + 36400 36470 71 Locate
trnfM-CAU gene − 36620 36693 74 Locate
rps14 gene − 36843 37145 303 Locate
psaB gene − 37273 39477 2205 Locate
psaA gene − 39503 41755 2253 Locate
ycf3 gene − 42483 44436 1954 Locate
trnS-GGA gene + 44753 44839 87 Locate
rps4 gene − 45137 45742 606 Locate
trnT-UGU gene − 46133 46205 73 Locate
trnL-UAA gene + 46879 47452 574 Locate
trnF-GAA gene + 47744 47816 73 Locate
ndhJ gene − 48485 48979 495 Locate
ndhK gene − 49062 49739 678 Locate
ndhC gene − 49793 50155 363 Locate
trnV-UAC gene − 51114 51766 653 Locate
trnM-CAU gene + 51955 52027 73 Locate
atpE gene − 52245 52646 402 Locate
atpB gene − 52643 54139 1497 Locate
rbcL gene + 54921 56375 1455 Locate
accD gene + 57061 58527 1467 Locate
psaI gene + 59216 59326 111 Locate
ycf4 gene + 59757 60311 555 Locate
cemA gene + 60872 61561 690 Locate
petA gene + 61778 62740 963 Locate
psbJ gene − 63787 63909 123 Locate
psbL gene − 64047 64163 117 Locate
psbF gene − 64187 64306 120 Locate
psbE gene − 64321 64572 252 Locate
petL gene + 65503 65598 96 Locate
petG gene + 65773 65886 114 Locate
trnW-CCA gene − 66012 66085 74 Locate
trnP-UGG gene − 66255 66328 74 Locate
psaJ gene + 66603 66737 135 Locate
rpl33 gene + 67209 67409 201 Locate
rps18 gene + 67556 67861 306 Locate
rpl20 gene − 68041 68427 387 Locate
rps12 gene − 69194 69307 114 Locate
clpP gene − 69434 71298 1865 Locate
psbB gene + 71736 73262 1527 Locate
psbT gene + 73449 73556 108 Locate
psbN gene − 73617 73748 132 Locate
psbH gene + 73852 74073 222 Locate
petB gene + 74188 75568 1381 Locate
petD gene + 75763 76984 1222 Locate
rpoA gene − 77147 78160 1014 Locate
rps11 gene − 78232 78687 456 Locate
rpl36 gene − 78775 78888 114 Locate
infA gene − 78984 79217 234 Locate
rps8 gene − 79346 79759 414 Locate
rpl14 gene − 79950 80318 369 Locate
rpl16 gene − 80445 81751 1307 Locate
rps3 gene − 81898 82560 663 Locate
rpl22 gene − 82545 83009 465 Locate
rps19 gene − 83069 83347 279 Locate
rpl2 gene − 83399 84890 1492 Locate
rpl23 gene − 84909 85190 282 Locate
trnI-CAU gene − 85356 85429 74 Locate
ycf2 gene + 85518 92402 6885 Locate
ycf15 gene + 92445 92693 249 Locate
trnL-CAA gene − 92954 93034 81 Locate
ndhB gene − 93570 95781 2212 Locate
rps7 gene − 96056 96523 468 Locate
rps12 gene − 96577 97370 794 Locate
trnV-GAC gene + 98987 99058 72 Locate
rrn16 gene + 99286 100776 1491 Locate
trnI-GAU gene + 101066 102074 1009 Locate
trnA-UGC gene + 102139 103017 879 Locate
rrn23 gene + 103210 106019 2810 Locate
rrn4.5 gene + 106118 106220 103 Locate
rrn5 gene + 106476 106596 121 Locate
trnR-ACG gene + 106831 106904 74 Locate
trnN-GUU gene − 107471 107542 72 Locate
ndhF gene − 108932 111148 2217 Locate
rpl32 gene + 111653 111829 177 Locate
trnL-UAG gene + 112553 112632 80 Locate
ccsA gene + 112717 113688 972 Locate
ndhD gene − 113871 115391 1521 Locate
psaC gene − 115491 115736 246 Locate
ndhE gene − 115999 116304 306 Locate
ndhG gene − 116526 117056 531 Locate
ndhI gene − 117435 117941 507 Locate
ndhA gene − 118028 120186 2159 Locate
ndhH gene − 120188 121369 1182 Locate
rps15 gene − 121481 121813 333 Locate
ycf1 gene − 122131 127683 5553 Locate
trnN-GUU gene + 128009 128080 72 Locate
trnR-ACG gene − 128647 128720 74 Locate
rrn5 gene − 128955 129075 121 Locate
rrn4.5 gene − 129331 129433 103 Locate
rrn23 gene − 129532 132341 2810 Locate
trnA-UGC gene − 132534 133412 879 Locate
trnI-GAU gene − 133477 134485 1009 Locate
rrn16 gene − 134775 136265 1491 Locate
trnV-GAC gene − 136493 136564 72 Locate
rps12 gene + 138181 138974 794 Locate
rps7 gene + 139028 139495 468 Locate
ndhB gene + 139770 141981 2212 Locate
trnL-CAA gene + 142517 142597 81 Locate
ycf15 gene − 142858 143121 264 Locate
ycf2 gene − 143149 150033 6885 Locate
trnI-CAU gene + 150122 150195 74 Locate
rpl23 gene + 150361 150642 282 Locate
rpl2 gene + 150661 152152 1492 Locate
Status Available
Accession OR565935.1
Length 152,245 bp
GC content 38.4%
Annotated genes 132
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 14 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources