Paraphlomis longicalyx chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · OR565925.1 · 2–76 bp · −
psbA · OR565925.1 · 308–1,366 bp · −
trnK-UUU · OR565925.1 · 1,599–4,187 bp · −
matK · OR565925.1 · 1,903–3,438 bp · −
rps16 · OR565925.1 · 5,114–6,254 bp · −
trnQ-UUG · OR565925.1 · 7,184–7,256 bp · −
trnS-GCU · OR565925.1 · 8,388–8,475 bp · −
atpA · OR565925.1 · 10,266–11,789 bp · −
atpF · OR565925.1 · 11,877–13,098 bp · −
atpH · OR565925.1 · 13,470–13,715 bp · −
atpI · OR565925.1 · 14,715–15,458 bp · −
rps2 · OR565925.1 · 15,689–16,399 bp · −
rpoC2 · OR565925.1 · 16,699–20,808 bp · −
rpoC1 · OR565925.1 · 20,963–23,794 bp · −
rpoB · OR565925.1 · 23,821–27,033 bp · −
psbM · OR565925.1 · 29,924–30,028 bp · −
trnD-GUC · OR565925.1 · 30,552–30,625 bp · −
trnY-GUA · OR565925.1 · 30,740–30,823 bp · −
trnE-UUC · OR565925.1 · 30,883–30,955 bp · −
trnS-UGA · OR565925.1 · 35,502–35,594 bp · −
trnfM-CAU · OR565925.1 · 36,557–36,630 bp · −
rps14 · OR565925.1 · 36,780–37,082 bp · −
psaB · OR565925.1 · 37,210–39,414 bp · −
psaA · OR565925.1 · 39,440–41,692 bp · −
ycf3 · OR565925.1 · 42,420–44,375 bp · −
rps4 · OR565925.1 · 45,090–45,695 bp · −
trnT-UGU · OR565925.1 · 46,086–46,158 bp · −
ndhJ · OR565925.1 · 48,438–48,932 bp · −
ndhK · OR565925.1 · 49,015–49,692 bp · −
ndhC · OR565925.1 · 49,746–50,108 bp · −
trnV-UAC · OR565925.1 · 51,074–51,720 bp · −
atpE · OR565925.1 · 52,199–52,600 bp · −
atpB · OR565925.1 · 52,597–54,087 bp · −
psbJ · OR565925.1 · 63,782–63,904 bp · −
psbL · OR565925.1 · 64,042–64,158 bp · −
psbF · OR565925.1 · 64,182–64,301 bp · −
psbE · OR565925.1 · 64,316–64,567 bp · −
trnW-CCA · OR565925.1 · 65,961–66,034 bp · −
trnP-UGG · OR565925.1 · 66,204–66,277 bp · −
rpl20 · OR565925.1 · 67,991–68,377 bp · −
rps12 · OR565925.1 · 69,144–69,257 bp · −
rps12 · OR565925.1 · 96,519–97,312 bp · −
clpP · OR565925.1 · 69,384–71,249 bp · −
psbN · OR565925.1 · 73,574–73,705 bp · −
rpoA · OR565925.1 · 77,111–78,124 bp · −
rps11 · OR565925.1 · 78,196–78,627 bp · −
rpl36 · OR565925.1 · 78,715–78,828 bp · −
infA · OR565925.1 · 78,924–79,157 bp · −
rps8 · OR565925.1 · 79,283–79,696 bp · −
rpl14 · OR565925.1 · 79,887–80,255 bp · −
rpl16 · OR565925.1 · 80,382–81,688 bp · −
rps3 · OR565925.1 · 81,835–82,497 bp · −
rpl22 · OR565925.1 · 82,482–82,946 bp · −
rps19 · OR565925.1 · 83,006–83,284 bp · −
rpl2 · OR565925.1 · 83,337–84,828 bp · −
rpl23 · OR565925.1 · 84,847–85,128 bp · −
trnI-CAU · OR565925.1 · 85,294–85,367 bp · −
trnL-CAA · OR565925.1 · 92,892–92,972 bp · −
ndhB · OR565925.1 · 93,512–95,723 bp · −
rps7 · OR565925.1 · 95,998–96,465 bp · −
trnN-GUU · OR565925.1 · 107,407–107,478 bp · −
ndhF · OR565925.1 · 108,868–111,090 bp · −
ndhD · OR565925.1 · 113,815–115,335 bp · −
psaC · OR565925.1 · 115,434–115,679 bp · −
ndhE · OR565925.1 · 115,942–116,247 bp · −
ndhG · OR565925.1 · 116,469–116,999 bp · −
ndhI · OR565925.1 · 117,378–117,875 bp · −
ndhA · OR565925.1 · 117,962–120,115 bp · −
ndhH · OR565925.1 · 120,117–121,298 bp · −
rps15 · OR565925.1 · 121,399–121,734 bp · −
ycf1 · OR565925.1 · 122,052–127,595 bp · −
trnR-ACG · OR565925.1 · 128,559–128,632 bp · −
rrn5 · OR565925.1 · 128,867–128,987 bp · −
rrn4.5 · OR565925.1 · 129,243–129,345 bp · −
rrn23 · OR565925.1 · 129,444–132,253 bp · −
trnA-UGC · OR565925.1 · 132,446–133,324 bp · −
trnI-GAU · OR565925.1 · 133,389–134,397 bp · −
rrn16 · OR565925.1 · 134,687–136,177 bp · −
trnV-GAC · OR565925.1 · 136,405–136,476 bp · −
ycf15 · OR565925.1 · 142,768–143,016 bp · −
ycf2 · OR565925.1 · 143,059–149,943 bp · −
psbK · OR565925.1 · 7,593–7,778 bp · +
psbI · OR565925.1 · 8,154–8,264 bp · +
trnG-UCC · OR565925.1 · 9,168–9,921 bp · +
trnR-UCU · OR565925.1 · 10,098–10,169 bp · +
trnC-GCA · OR565925.1 · 28,135–28,210 bp · +
petN · OR565925.1 · 29,047–29,136 bp · +
trnT-GGU · OR565925.1 · 31,515–31,585 bp · +
psbD · OR565925.1 · 32,841–33,902 bp · +
psbC · OR565925.1 · 33,850–35,271 bp · +
psbZ · OR565925.1 · 35,919–36,107 bp · +
trnG-GCC · OR565925.1 · 36,337–36,407 bp · +
trnS-GGA · OR565925.1 · 44,705–44,791 bp · +
trnL-UAA · OR565925.1 · 46,833–47,411 bp · +
trnF-GAA · OR565925.1 · 47,703–47,775 bp · +
trnM-CAU · OR565925.1 · 51,909–51,981 bp · +
rbcL · OR565925.1 · 54,897–56,351 bp · +
accD · OR565925.1 · 57,041–58,507 bp · +
psaI · OR565925.1 · 59,194–59,304 bp · +
ycf4 · OR565925.1 · 59,740–60,294 bp · +
cemA · OR565925.1 · 60,862–61,551 bp · +
petA · OR565925.1 · 61,768–62,730 bp · +
petL · OR565925.1 · 65,452–65,547 bp · +
petG · OR565925.1 · 65,722–65,835 bp · +
psaJ · OR565925.1 · 66,552–66,686 bp · +
rpl33 · OR565925.1 · 67,159–67,359 bp · +
rps18 · OR565925.1 · 67,506–67,811 bp · +
rps12 · OR565925.1 · 138,087–138,880 bp · +
psbB · OR565925.1 · 71,687–73,213 bp · +
psbT · OR565925.1 · 73,406–73,513 bp · +
psbH · OR565925.1 · 73,809–74,030 bp · +
petB · OR565925.1 · 74,155–75,532 bp · +
petD · OR565925.1 · 75,727–76,948 bp · +
ycf2 · OR565925.1 · 85,456–92,340 bp · +
ycf15 · OR565925.1 · 92,383–92,631 bp · +
trnV-GAC · OR565925.1 · 98,923–98,994 bp · +
rrn16 · OR565925.1 · 99,222–100,712 bp · +
trnI-GAU · OR565925.1 · 101,002–102,010 bp · +
trnA-UGC · OR565925.1 · 102,075–102,953 bp · +
rrn23 · OR565925.1 · 103,146–105,955 bp · +
rrn4.5 · OR565925.1 · 106,054–106,156 bp · +
rrn5 · OR565925.1 · 106,412–106,532 bp · +
trnR-ACG · OR565925.1 · 106,767–106,840 bp · +
rpl32 · OR565925.1 · 111,589–111,765 bp · +
trnL-UAG · OR565925.1 · 112,489–112,568 bp · +
ccsA · OR565925.1 · 112,661–113,632 bp · +
trnN-GUU · OR565925.1 · 127,921–127,992 bp · +
rps7 · OR565925.1 · 138,934–139,401 bp · +
ndhB · OR565925.1 · 139,676–141,887 bp · +
trnL-CAA · OR565925.1 · 142,427–142,507 bp · +
trnI-CAU · OR565925.1 · 150,032–150,105 bp · +
rpl23 · OR565925.1 · 150,271–150,552 bp · +
rpl2 · OR565925.1 · 150,571–152,062 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Paraphlomis longicalyx
ANNOTATED PLASTOME
OR565925.1
152,156 bp · 132 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38039 76078 114117 152156 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
133 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 2 76 75 Locate
psbA gene − 308 1366 1059 Locate
trnK-UUU gene − 1599 4187 2589 Locate
matK gene − 1903 3438 1536 Locate
rps16 gene − 5114 6254 1141 Locate
trnQ-UUG gene − 7184 7256 73 Locate
psbK gene + 7593 7778 186 Locate
psbI gene + 8154 8264 111 Locate
trnS-GCU gene − 8388 8475 88 Locate
trnG-UCC gene + 9168 9921 754 Locate
trnR-UCU gene + 10098 10169 72 Locate
atpA gene − 10266 11789 1524 Locate
atpF gene − 11877 13098 1222 Locate
atpH gene − 13470 13715 246 Locate
atpI gene − 14715 15458 744 Locate
rps2 gene − 15689 16399 711 Locate
rpoC2 gene − 16699 20808 4110 Locate
rpoC1 gene − 20963 23794 2832 Locate
rpoB gene − 23821 27033 3213 Locate
trnC-GCA gene + 28135 28210 76 Locate
petN gene + 29047 29136 90 Locate
psbM gene − 29924 30028 105 Locate
trnD-GUC gene − 30552 30625 74 Locate
trnY-GUA gene − 30740 30823 84 Locate
trnE-UUC gene − 30883 30955 73 Locate
trnT-GGU gene + 31515 31585 71 Locate
psbD gene + 32841 33902 1062 Locate
psbC gene + 33850 35271 1422 Locate
trnS-UGA gene − 35502 35594 93 Locate
psbZ gene + 35919 36107 189 Locate
trnG-GCC gene + 36337 36407 71 Locate
trnfM-CAU gene − 36557 36630 74 Locate
rps14 gene − 36780 37082 303 Locate
psaB gene − 37210 39414 2205 Locate
psaA gene − 39440 41692 2253 Locate
ycf3 gene − 42420 44375 1956 Locate
trnS-GGA gene + 44705 44791 87 Locate
rps4 gene − 45090 45695 606 Locate
trnT-UGU gene − 46086 46158 73 Locate
trnL-UAA gene + 46833 47411 579 Locate
trnF-GAA gene + 47703 47775 73 Locate
ndhJ gene − 48438 48932 495 Locate
ndhK gene − 49015 49692 678 Locate
ndhC gene − 49746 50108 363 Locate
trnV-UAC gene − 51074 51720 647 Locate
trnM-CAU gene + 51909 51981 73 Locate
atpE gene − 52199 52600 402 Locate
atpB gene − 52597 54087 1491 Locate
rbcL gene + 54897 56351 1455 Locate
accD gene + 57041 58507 1467 Locate
psaI gene + 59194 59304 111 Locate
ycf4 gene + 59740 60294 555 Locate
cemA gene + 60862 61551 690 Locate
petA gene + 61768 62730 963 Locate
psbJ gene − 63782 63904 123 Locate
psbL gene − 64042 64158 117 Locate
psbF gene − 64182 64301 120 Locate
psbE gene − 64316 64567 252 Locate
petL gene + 65452 65547 96 Locate
petG gene + 65722 65835 114 Locate
trnW-CCA gene − 65961 66034 74 Locate
trnP-UGG gene − 66204 66277 74 Locate
psaJ gene + 66552 66686 135 Locate
rpl33 gene + 67159 67359 201 Locate
rps18 gene + 67506 67811 306 Locate
rpl20 gene − 67991 68377 387 Locate
rps12 gene − 69144 69257 114 Locate
clpP gene − 69384 71249 1866 Locate
psbB gene + 71687 73213 1527 Locate
psbT gene + 73406 73513 108 Locate
psbN gene − 73574 73705 132 Locate
psbH gene + 73809 74030 222 Locate
petB gene + 74155 75532 1378 Locate
petD gene + 75727 76948 1222 Locate
rpoA gene − 77111 78124 1014 Locate
rps11 gene − 78196 78627 432 Locate
rpl36 gene − 78715 78828 114 Locate
infA gene − 78924 79157 234 Locate
rps8 gene − 79283 79696 414 Locate
rpl14 gene − 79887 80255 369 Locate
rpl16 gene − 80382 81688 1307 Locate
rps3 gene − 81835 82497 663 Locate
rpl22 gene − 82482 82946 465 Locate
rps19 gene − 83006 83284 279 Locate
rpl2 gene − 83337 84828 1492 Locate
rpl23 gene − 84847 85128 282 Locate
trnI-CAU gene − 85294 85367 74 Locate
ycf2 gene + 85456 92340 6885 Locate
ycf15 gene + 92383 92631 249 Locate
trnL-CAA gene − 92892 92972 81 Locate
ndhB gene − 93512 95723 2212 Locate
rps7 gene − 95998 96465 468 Locate
rps12 gene − 96519 97312 794 Locate
trnV-GAC gene + 98923 98994 72 Locate
rrn16 gene + 99222 100712 1491 Locate
trnI-GAU gene + 101002 102010 1009 Locate
trnA-UGC gene + 102075 102953 879 Locate
rrn23 gene + 103146 105955 2810 Locate
rrn4.5 gene + 106054 106156 103 Locate
rrn5 gene + 106412 106532 121 Locate
trnR-ACG gene + 106767 106840 74 Locate
trnN-GUU gene − 107407 107478 72 Locate
ndhF gene − 108868 111090 2223 Locate
rpl32 gene + 111589 111765 177 Locate
trnL-UAG gene + 112489 112568 80 Locate
ccsA gene + 112661 113632 972 Locate
ndhD gene − 113815 115335 1521 Locate
psaC gene − 115434 115679 246 Locate
ndhE gene − 115942 116247 306 Locate
ndhG gene − 116469 116999 531 Locate
ndhI gene − 117378 117875 498 Locate
ndhA gene − 117962 120115 2154 Locate
ndhH gene − 120117 121298 1182 Locate
rps15 gene − 121399 121734 336 Locate
ycf1 gene − 122052 127595 5544 Locate
trnN-GUU gene + 127921 127992 72 Locate
trnR-ACG gene − 128559 128632 74 Locate
rrn5 gene − 128867 128987 121 Locate
rrn4.5 gene − 129243 129345 103 Locate
rrn23 gene − 129444 132253 2810 Locate
trnA-UGC gene − 132446 133324 879 Locate
trnI-GAU gene − 133389 134397 1009 Locate
rrn16 gene − 134687 136177 1491 Locate
trnV-GAC gene − 136405 136476 72 Locate
rps12 gene + 138087 138880 794 Locate
rps7 gene + 138934 139401 468 Locate
ndhB gene + 139676 141887 2212 Locate
trnL-CAA gene + 142427 142507 81 Locate
ycf15 gene − 142768 143016 249 Locate
ycf2 gene − 143059 149943 6885 Locate
trnI-CAU gene + 150032 150105 74 Locate
rpl23 gene + 150271 150552 282 Locate
rpl2 gene + 150571 152062 1492 Locate
Status Available
Accession OR565925.1
Length 152,156 bp
GC content 38.4%
Annotated genes 132
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 14 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources