Paraphlomis nana chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · OR565913.1 · 2–76 bp · −
psbA · OR565913.1 · 309–1,367 bp · −
trnK-UUU · OR565913.1 · 1,600–4,188 bp · −
matK · OR565913.1 · 1,904–3,439 bp · −
rps16 · OR565913.1 · 5,112–6,252 bp · −
trnQ-UUG · OR565913.1 · 7,199–7,270 bp · −
trnS-GCU · OR565913.1 · 8,397–8,484 bp · −
atpA · OR565913.1 · 10,203–11,726 bp · −
atpF · OR565913.1 · 11,814–13,032 bp · −
atpH · OR565913.1 · 13,404–13,649 bp · −
atpI · OR565913.1 · 14,648–15,391 bp · −
rps2 · OR565913.1 · 15,622–16,332 bp · −
rpoC2 · OR565913.1 · 16,553–20,743 bp · −
rpoC1 · OR565913.1 · 20,898–23,729 bp · −
rpoB · OR565913.1 · 23,756–26,968 bp · −
psbM · OR565913.1 · 29,669–29,773 bp · −
trnD-GUC · OR565913.1 · 30,297–30,370 bp · −
trnY-GUA · OR565913.1 · 30,485–30,568 bp · −
trnE-UUC · OR565913.1 · 30,628–30,700 bp · −
trnS-UGA · OR565913.1 · 35,265–35,357 bp · −
trnfM-CAU · OR565913.1 · 36,321–36,394 bp · −
rps14 · OR565913.1 · 36,544–36,846 bp · −
psaB · OR565913.1 · 36,974–39,178 bp · −
psaA · OR565913.1 · 39,204–41,456 bp · −
ycf3 · OR565913.1 · 42,184–44,142 bp · −
rps4 · OR565913.1 · 44,876–45,481 bp · −
trnT-UGU · OR565913.1 · 45,874–45,946 bp · −
ndhJ · OR565913.1 · 48,229–48,723 bp · −
ndhK · OR565913.1 · 48,806–49,483 bp · −
ndhC · OR565913.1 · 49,537–49,899 bp · −
trnV-UAC · OR565913.1 · 50,865–51,517 bp · −
atpE · OR565913.1 · 51,997–52,398 bp · −
atpB · OR565913.1 · 52,395–53,891 bp · −
psbJ · OR565913.1 · 63,555–63,677 bp · −
psbL · OR565913.1 · 63,815–63,931 bp · −
psbF · OR565913.1 · 63,955–64,074 bp · −
psbE · OR565913.1 · 64,089–64,340 bp · −
trnW-CCA · OR565913.1 · 65,781–65,854 bp · −
trnP-UGG · OR565913.1 · 66,024–66,097 bp · −
rpl20 · OR565913.1 · 67,847–68,233 bp · −
rps12 · OR565913.1 · 69,000–69,113 bp · −
rps12 · OR565913.1 · 96,355–97,148 bp · −
clpP · OR565913.1 · 69,240–71,106 bp · −
psbN · OR565913.1 · 73,431–73,562 bp · −
rpoA · OR565913.1 · 76,966–77,979 bp · −
rps11 · OR565913.1 · 78,051–78,482 bp · −
rpl36 · OR565913.1 · 78,570–78,683 bp · −
infA · OR565913.1 · 78,779–79,012 bp · −
rps8 · OR565913.1 · 79,136–79,549 bp · −
rpl14 · OR565913.1 · 79,741–80,109 bp · −
rpl16 · OR565913.1 · 80,236–81,542 bp · −
rps3 · OR565913.1 · 81,689–82,351 bp · −
rpl22 · OR565913.1 · 82,336–82,800 bp · −
rps19 · OR565913.1 · 82,860–83,138 bp · −
rpl2 · OR565913.1 · 83,191–84,682 bp · −
rpl23 · OR565913.1 · 84,701–84,982 bp · −
trnI-CAU · OR565913.1 · 85,148–85,221 bp · −
trnL-CAA · OR565913.1 · 92,728–92,808 bp · −
ndhB · OR565913.1 · 93,348–95,559 bp · −
rps7 · OR565913.1 · 95,834–96,301 bp · −
trnN-GUU · OR565913.1 · 107,243–107,314 bp · −
ndhF · OR565913.1 · 108,704–110,926 bp · −
ndhD · OR565913.1 · 113,644–115,164 bp · −
psaC · OR565913.1 · 115,263–115,508 bp · −
ndhE · OR565913.1 · 115,771–116,076 bp · −
ndhG · OR565913.1 · 116,292–116,822 bp · −
ndhI · OR565913.1 · 117,201–117,707 bp · −
ndhA · OR565913.1 · 117,794–119,959 bp · −
ndhH · OR565913.1 · 119,961–121,142 bp · −
rps15 · OR565913.1 · 121,243–121,515 bp · −
ycf1 · OR565913.1 · 121,896–127,448 bp · −
trnR-ACG · OR565913.1 · 128,406–128,479 bp · −
rrn5 · OR565913.1 · 128,714–128,834 bp · −
rrn4.5 · OR565913.1 · 129,090–129,192 bp · −
rrn23 · OR565913.1 · 129,291–132,100 bp · −
trnA-UGC · OR565913.1 · 132,293–133,171 bp · −
trnI-GAU · OR565913.1 · 133,236–134,244 bp · −
rrn16 · OR565913.1 · 134,534–136,024 bp · −
trnV-GAC · OR565913.1 · 136,252–136,323 bp · −
ycf15 · OR565913.1 · 142,621–142,884 bp · −
ycf2 · OR565913.1 · 142,912–149,778 bp · −
psbK · OR565913.1 · 7,607–7,792 bp · +
psbI · OR565913.1 · 8,162–8,272 bp · +
trnG-UCC · OR565913.1 · 9,099–9,858 bp · +
trnR-UCU · OR565913.1 · 10,032–10,106 bp · +
trnC-GCA · OR565913.1 · 28,077–28,152 bp · +
petN · OR565913.1 · 28,786–28,881 bp · +
trnT-GGU · OR565913.1 · 31,290–31,360 bp · +
psbD · OR565913.1 · 32,610–33,671 bp · +
psbC · OR565913.1 · 33,619–35,040 bp · +
psbZ · OR565913.1 · 35,683–35,871 bp · +
trnG-GCC · OR565913.1 · 36,101–36,171 bp · +
trnS-GGA · OR565913.1 · 44,472–44,558 bp · +
trnL-UAA · OR565913.1 · 46,623–47,196 bp · +
trnF-GAA · OR565913.1 · 47,488–47,560 bp · +
trnM-CAU · OR565913.1 · 51,707–51,778 bp · +
rbcL · OR565913.1 · 54,673–56,139 bp · +
accD · OR565913.1 · 56,829–58,280 bp · +
psaI · OR565913.1 · 58,982–59,092 bp · +
ycf4 · OR565913.1 · 59,528–60,082 bp · +
cemA · OR565913.1 · 60,643–61,332 bp · +
petA · OR565913.1 · 61,549–62,511 bp · +
petL · OR565913.1 · 65,271–65,366 bp · +
petG · OR565913.1 · 65,541–65,654 bp · +
psaJ · OR565913.1 · 66,372–66,506 bp · +
rpl33 · OR565913.1 · 66,978–67,178 bp · +
rps18 · OR565913.1 · 67,325–67,630 bp · +
rps12 · OR565913.1 · 137,940–138,733 bp · +
psbB · OR565913.1 · 71,544–73,070 bp · +
psbT · OR565913.1 · 73,263–73,370 bp · +
psbH · OR565913.1 · 73,666–73,887 bp · +
petB · OR565913.1 · 74,012–75,387 bp · +
petD · OR565913.1 · 75,582–76,803 bp · +
ycf2 · OR565913.1 · 85,310–92,176 bp · +
ycf15 · OR565913.1 · 92,219–92,467 bp · +
trnV-GAC · OR565913.1 · 98,765–98,836 bp · +
rrn16 · OR565913.1 · 99,064–100,554 bp · +
trnI-GAU · OR565913.1 · 100,844–101,852 bp · +
trnA-UGC · OR565913.1 · 101,917–102,795 bp · +
rrn23 · OR565913.1 · 102,988–105,797 bp · +
rrn4.5 · OR565913.1 · 105,896–105,998 bp · +
rrn5 · OR565913.1 · 106,254–106,374 bp · +
trnR-ACG · OR565913.1 · 106,609–106,682 bp · +
rpl32 · OR565913.1 · 111,432–111,608 bp · +
trnL-UAG · OR565913.1 · 112,332–112,411 bp · +
ccsA · OR565913.1 · 112,496–113,461 bp · +
trnN-GUU · OR565913.1 · 127,774–127,845 bp · +
rps7 · OR565913.1 · 138,787–139,254 bp · +
ndhB · OR565913.1 · 139,529–141,740 bp · +
trnL-CAA · OR565913.1 · 142,280–142,360 bp · +
trnI-CAU · OR565913.1 · 149,867–149,940 bp · +
rpl23 · OR565913.1 · 150,106–150,387 bp · +
rpl2 · OR565913.1 · 150,406–151,897 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Paraphlomis nana
ANNOTATED PLASTOME
OR565913.1
151,991 bp · 132 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37998 75996 113993 151991 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
133 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 2 76 75 Locate
psbA gene − 309 1367 1059 Locate
trnK-UUU gene − 1600 4188 2589 Locate
matK gene − 1904 3439 1536 Locate
rps16 gene − 5112 6252 1141 Locate
trnQ-UUG gene − 7199 7270 72 Locate
psbK gene + 7607 7792 186 Locate
psbI gene + 8162 8272 111 Locate
trnS-GCU gene − 8397 8484 88 Locate
trnG-UCC gene + 9099 9858 760 Locate
trnR-UCU gene + 10032 10106 75 Locate
atpA gene − 10203 11726 1524 Locate
atpF gene − 11814 13032 1219 Locate
atpH gene − 13404 13649 246 Locate
atpI gene − 14648 15391 744 Locate
rps2 gene − 15622 16332 711 Locate
rpoC2 gene − 16553 20743 4191 Locate
rpoC1 gene − 20898 23729 2832 Locate
rpoB gene − 23756 26968 3213 Locate
trnC-GCA gene + 28077 28152 76 Locate
petN gene + 28786 28881 96 Locate
psbM gene − 29669 29773 105 Locate
trnD-GUC gene − 30297 30370 74 Locate
trnY-GUA gene − 30485 30568 84 Locate
trnE-UUC gene − 30628 30700 73 Locate
trnT-GGU gene + 31290 31360 71 Locate
psbD gene + 32610 33671 1062 Locate
psbC gene + 33619 35040 1422 Locate
trnS-UGA gene − 35265 35357 93 Locate
psbZ gene + 35683 35871 189 Locate
trnG-GCC gene + 36101 36171 71 Locate
trnfM-CAU gene − 36321 36394 74 Locate
rps14 gene − 36544 36846 303 Locate
psaB gene − 36974 39178 2205 Locate
psaA gene − 39204 41456 2253 Locate
ycf3 gene − 42184 44142 1959 Locate
trnS-GGA gene + 44472 44558 87 Locate
rps4 gene − 44876 45481 606 Locate
trnT-UGU gene − 45874 45946 73 Locate
trnL-UAA gene + 46623 47196 574 Locate
trnF-GAA gene + 47488 47560 73 Locate
ndhJ gene − 48229 48723 495 Locate
ndhK gene − 48806 49483 678 Locate
ndhC gene − 49537 49899 363 Locate
trnV-UAC gene − 50865 51517 653 Locate
trnM-CAU gene + 51707 51778 72 Locate
atpE gene − 51997 52398 402 Locate
atpB gene − 52395 53891 1497 Locate
rbcL gene + 54673 56139 1467 Locate
accD gene + 56829 58280 1452 Locate
psaI gene + 58982 59092 111 Locate
ycf4 gene + 59528 60082 555 Locate
cemA gene + 60643 61332 690 Locate
petA gene + 61549 62511 963 Locate
psbJ gene − 63555 63677 123 Locate
psbL gene − 63815 63931 117 Locate
psbF gene − 63955 64074 120 Locate
psbE gene − 64089 64340 252 Locate
petL gene + 65271 65366 96 Locate
petG gene + 65541 65654 114 Locate
trnW-CCA gene − 65781 65854 74 Locate
trnP-UGG gene − 66024 66097 74 Locate
psaJ gene + 66372 66506 135 Locate
rpl33 gene + 66978 67178 201 Locate
rps18 gene + 67325 67630 306 Locate
rpl20 gene − 67847 68233 387 Locate
rps12 gene − 69000 69113 114 Locate
clpP gene − 69240 71106 1867 Locate
psbB gene + 71544 73070 1527 Locate
psbT gene + 73263 73370 108 Locate
psbN gene − 73431 73562 132 Locate
psbH gene + 73666 73887 222 Locate
petB gene + 74012 75387 1376 Locate
petD gene + 75582 76803 1222 Locate
rpoA gene − 76966 77979 1014 Locate
rps11 gene − 78051 78482 432 Locate
rpl36 gene − 78570 78683 114 Locate
infA gene − 78779 79012 234 Locate
rps8 gene − 79136 79549 414 Locate
rpl14 gene − 79741 80109 369 Locate
rpl16 gene − 80236 81542 1307 Locate
rps3 gene − 81689 82351 663 Locate
rpl22 gene − 82336 82800 465 Locate
rps19 gene − 82860 83138 279 Locate
rpl2 gene − 83191 84682 1492 Locate
rpl23 gene − 84701 84982 282 Locate
trnI-CAU gene − 85148 85221 74 Locate
ycf2 gene + 85310 92176 6867 Locate
ycf15 gene + 92219 92467 249 Locate
trnL-CAA gene − 92728 92808 81 Locate
ndhB gene − 93348 95559 2212 Locate
rps7 gene − 95834 96301 468 Locate
rps12 gene − 96355 97148 794 Locate
trnV-GAC gene + 98765 98836 72 Locate
rrn16 gene + 99064 100554 1491 Locate
trnI-GAU gene + 100844 101852 1009 Locate
trnA-UGC gene + 101917 102795 879 Locate
rrn23 gene + 102988 105797 2810 Locate
rrn4.5 gene + 105896 105998 103 Locate
rrn5 gene + 106254 106374 121 Locate
trnR-ACG gene + 106609 106682 74 Locate
trnN-GUU gene − 107243 107314 72 Locate
ndhF gene − 108704 110926 2223 Locate
rpl32 gene + 111432 111608 177 Locate
trnL-UAG gene + 112332 112411 80 Locate
ccsA gene + 112496 113461 966 Locate
ndhD gene − 113644 115164 1521 Locate
psaC gene − 115263 115508 246 Locate
ndhE gene − 115771 116076 306 Locate
ndhG gene − 116292 116822 531 Locate
ndhI gene − 117201 117707 507 Locate
ndhA gene − 117794 119959 2166 Locate
ndhH gene − 119961 121142 1182 Locate
rps15 gene − 121243 121515 273 Locate
ycf1 gene − 121896 127448 5553 Locate
trnN-GUU gene + 127774 127845 72 Locate
trnR-ACG gene − 128406 128479 74 Locate
rrn5 gene − 128714 128834 121 Locate
rrn4.5 gene − 129090 129192 103 Locate
rrn23 gene − 129291 132100 2810 Locate
trnA-UGC gene − 132293 133171 879 Locate
trnI-GAU gene − 133236 134244 1009 Locate
rrn16 gene − 134534 136024 1491 Locate
trnV-GAC gene − 136252 136323 72 Locate
rps12 gene + 137940 138733 794 Locate
rps7 gene + 138787 139254 468 Locate
ndhB gene + 139529 141740 2212 Locate
trnL-CAA gene + 142280 142360 81 Locate
ycf15 gene − 142621 142884 264 Locate
ycf2 gene − 142912 149778 6867 Locate
trnI-CAU gene + 149867 149940 74 Locate
rpl23 gene + 150106 150387 282 Locate
rpl2 gene + 150406 151897 1492 Locate
Status Available
Accession OR565913.1
Length 151,991 bp
GC content 38.4%
Annotated genes 132
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 14 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources