Paraphlomis patentisetulosa chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · OR565932.1 · 2–76 bp · −
psbA · OR565932.1 · 308–1,366 bp · −
trnK-UUU · OR565932.1 · 1,595–4,183 bp · −
matK · OR565932.1 · 1,899–3,434 bp · −
rps16 · OR565932.1 · 5,110–6,250 bp · −
trnQ-UUG · OR565932.1 · 7,198–7,270 bp · −
trnS-GCU · OR565932.1 · 8,403–8,490 bp · −
atpA · OR565932.1 · 10,287–11,810 bp · −
atpF · OR565932.1 · 11,898–13,122 bp · −
atpH · OR565932.1 · 13,492–13,737 bp · −
atpI · OR565932.1 · 14,737–15,480 bp · −
rps2 · OR565932.1 · 15,711–16,421 bp · −
rpoC2 · OR565932.1 · 16,721–20,830 bp · −
rpoC1 · OR565932.1 · 20,985–23,816 bp · −
rpoB · OR565932.1 · 23,843–27,055 bp · −
psbM · OR565932.1 · 29,946–30,050 bp · −
trnD-GUC · OR565932.1 · 30,574–30,647 bp · −
trnY-GUA · OR565932.1 · 30,762–30,845 bp · −
trnE-UUC · OR565932.1 · 30,905–30,977 bp · −
trnS-UGA · OR565932.1 · 35,520–35,612 bp · −
trnfM-CAU · OR565932.1 · 36,574–36,647 bp · −
rps14 · OR565932.1 · 36,797–37,099 bp · −
psaB · OR565932.1 · 37,227–39,431 bp · −
psaA · OR565932.1 · 39,457–41,709 bp · −
ycf3 · OR565932.1 · 42,437–44,393 bp · −
rps4 · OR565932.1 · 45,108–45,713 bp · −
trnT-UGU · OR565932.1 · 46,106–46,178 bp · −
ndhJ · OR565932.1 · 48,456–48,932 bp · −
ndhK · OR565932.1 · 49,033–49,710 bp · −
ndhC · OR565932.1 · 49,764–50,126 bp · −
trnV-UAC · OR565932.1 · 51,092–51,739 bp · −
atpE · OR565932.1 · 52,218–52,619 bp · −
atpB · OR565932.1 · 52,616–54,112 bp · −
psbJ · OR565932.1 · 63,796–63,918 bp · −
psbL · OR565932.1 · 64,056–64,172 bp · −
psbF · OR565932.1 · 64,196–64,315 bp · −
psbE · OR565932.1 · 64,330–64,581 bp · −
trnW-CCA · OR565932.1 · 66,018–66,091 bp · −
trnP-UGG · OR565932.1 · 66,261–66,334 bp · −
rpl20 · OR565932.1 · 68,048–68,434 bp · −
rps12 · OR565932.1 · 69,201–69,314 bp · −
rps12 · OR565932.1 · 96,560–97,353 bp · −
clpP · OR565932.1 · 69,441–71,305 bp · −
psbN · OR565932.1 · 73,631–73,762 bp · −
rpoA · OR565932.1 · 77,171–78,184 bp · −
rps11 · OR565932.1 · 78,256–78,687 bp · −
rpl36 · OR565932.1 · 78,775–78,888 bp · −
infA · OR565932.1 · 78,984–79,217 bp · −
rps8 · OR565932.1 · 79,342–79,755 bp · −
rpl14 · OR565932.1 · 79,946–80,314 bp · −
rpl16 · OR565932.1 · 80,441–81,747 bp · −
rps3 · OR565932.1 · 81,894–82,556 bp · −
rpl22 · OR565932.1 · 82,541–83,005 bp · −
rps19 · OR565932.1 · 83,065–83,343 bp · −
rpl2 · OR565932.1 · 83,396–84,887 bp · −
rpl23 · OR565932.1 · 84,906–85,187 bp · −
trnI-CAU · OR565932.1 · 85,353–85,426 bp · −
trnL-CAA · OR565932.1 · 92,933–93,013 bp · −
ndhB · OR565932.1 · 93,553–95,764 bp · −
rps7 · OR565932.1 · 96,039–96,506 bp · −
trnN-GUU · OR565932.1 · 107,454–107,525 bp · −
ndhF · OR565932.1 · 108,915–111,137 bp · −
ndhD · OR565932.1 · 113,861–115,381 bp · −
psaC · OR565932.1 · 115,479–115,724 bp · −
ndhE · OR565932.1 · 115,987–116,292 bp · −
ndhG · OR565932.1 · 116,514–117,044 bp · −
ndhI · OR565932.1 · 117,423–117,920 bp · −
ndhA · OR565932.1 · 118,007–120,166 bp · −
ndhH · OR565932.1 · 120,168–121,349 bp · −
rps15 · OR565932.1 · 121,450–121,722 bp · −
ycf1 · OR565932.1 · 122,103–127,655 bp · −
trnR-ACG · OR565932.1 · 128,619–128,692 bp · −
rrn5 · OR565932.1 · 128,927–129,047 bp · −
rrn4.5 · OR565932.1 · 129,303–129,405 bp · −
rrn23 · OR565932.1 · 129,504–132,313 bp · −
trnA-UGC · OR565932.1 · 132,506–133,384 bp · −
trnI-GAU · OR565932.1 · 133,449–134,457 bp · −
rrn16 · OR565932.1 · 134,747–136,237 bp · −
trnV-GAC · OR565932.1 · 136,465–136,536 bp · −
ycf15 · OR565932.1 · 142,834–143,082 bp · −
ycf2 · OR565932.1 · 143,125–149,991 bp · −
psbK · OR565932.1 · 7,607–7,792 bp · +
psbI · OR565932.1 · 8,169–8,279 bp · +
trnG-UCC · OR565932.1 · 9,183–9,942 bp · +
trnR-UCU · OR565932.1 · 10,119–10,190 bp · +
trnC-GCA · OR565932.1 · 28,157–28,237 bp · +
petN · OR565932.1 · 29,063–29,158 bp · +
trnT-GGU · OR565932.1 · 31,537–31,607 bp · +
psbD · OR565932.1 · 32,859–33,920 bp · +
psbC · OR565932.1 · 33,868–35,289 bp · +
psbZ · OR565932.1 · 35,937–36,125 bp · +
trnG-GCC · OR565932.1 · 36,355–36,425 bp · +
trnS-GGA · OR565932.1 · 44,723–44,809 bp · +
trnL-UAA · OR565932.1 · 46,856–47,429 bp · +
trnF-GAA · OR565932.1 · 47,721–47,793 bp · +
trnM-CAU · OR565932.1 · 51,928–52,000 bp · +
rbcL · OR565932.1 · 54,916–56,370 bp · +
accD · OR565932.1 · 57,060–58,526 bp · +
psaI · OR565932.1 · 59,213–59,323 bp · +
ycf4 · OR565932.1 · 59,759–60,313 bp · +
cemA · OR565932.1 · 60,881–61,570 bp · +
petA · OR565932.1 · 61,787–62,749 bp · +
petL · OR565932.1 · 65,509–65,604 bp · +
petG · OR565932.1 · 65,779–65,892 bp · +
psaJ · OR565932.1 · 66,609–66,743 bp · +
rpl33 · OR565932.1 · 67,216–67,416 bp · +
rps18 · OR565932.1 · 67,563–67,868 bp · +
rps12 · OR565932.1 · 138,153–138,946 bp · +
psbB · OR565932.1 · 71,743–73,269 bp · +
psbT · OR565932.1 · 73,463–73,570 bp · +
psbH · OR565932.1 · 73,866–74,087 bp · +
petB · OR565932.1 · 74,212–75,592 bp · +
petD · OR565932.1 · 75,787–77,008 bp · +
ycf2 · OR565932.1 · 85,515–92,381 bp · +
ycf15 · OR565932.1 · 92,424–92,672 bp · +
trnV-GAC · OR565932.1 · 98,970–99,041 bp · +
rrn16 · OR565932.1 · 99,269–100,759 bp · +
trnI-GAU · OR565932.1 · 101,049–102,057 bp · +
trnA-UGC · OR565932.1 · 102,122–103,000 bp · +
rrn23 · OR565932.1 · 103,193–106,002 bp · +
rrn4.5 · OR565932.1 · 106,101–106,203 bp · +
rrn5 · OR565932.1 · 106,459–106,579 bp · +
trnR-ACG · OR565932.1 · 106,814–106,887 bp · +
rpl32 · OR565932.1 · 111,643–111,819 bp · +
trnL-UAG · OR565932.1 · 112,543–112,622 bp · +
ccsA · OR565932.1 · 112,707–113,678 bp · +
trnN-GUU · OR565932.1 · 127,981–128,052 bp · +
rps7 · OR565932.1 · 139,000–139,467 bp · +
ndhB · OR565932.1 · 139,742–141,953 bp · +
trnL-CAA · OR565932.1 · 142,493–142,573 bp · +
trnI-CAU · OR565932.1 · 150,080–150,153 bp · +
rpl23 · OR565932.1 · 150,319–150,600 bp · +
rpl2 · OR565932.1 · 150,619–152,110 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Paraphlomis patentisetulosa
ANNOTATED PLASTOME
OR565932.1
152,204 bp · 132 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38051 76102 114153 152204 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
133 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 2 76 75 Locate
psbA gene − 308 1366 1059 Locate
trnK-UUU gene − 1595 4183 2589 Locate
matK gene − 1899 3434 1536 Locate
rps16 gene − 5110 6250 1141 Locate
trnQ-UUG gene − 7198 7270 73 Locate
psbK gene + 7607 7792 186 Locate
psbI gene + 8169 8279 111 Locate
trnS-GCU gene − 8403 8490 88 Locate
trnG-UCC gene + 9183 9942 760 Locate
trnR-UCU gene + 10119 10190 72 Locate
atpA gene − 10287 11810 1524 Locate
atpF gene − 11898 13122 1225 Locate
atpH gene − 13492 13737 246 Locate
atpI gene − 14737 15480 744 Locate
rps2 gene − 15711 16421 711 Locate
rpoC2 gene − 16721 20830 4110 Locate
rpoC1 gene − 20985 23816 2832 Locate
rpoB gene − 23843 27055 3213 Locate
trnC-GCA gene + 28157 28237 81 Locate
petN gene + 29063 29158 96 Locate
psbM gene − 29946 30050 105 Locate
trnD-GUC gene − 30574 30647 74 Locate
trnY-GUA gene − 30762 30845 84 Locate
trnE-UUC gene − 30905 30977 73 Locate
trnT-GGU gene + 31537 31607 71 Locate
psbD gene + 32859 33920 1062 Locate
psbC gene + 33868 35289 1422 Locate
trnS-UGA gene − 35520 35612 93 Locate
psbZ gene + 35937 36125 189 Locate
trnG-GCC gene + 36355 36425 71 Locate
trnfM-CAU gene − 36574 36647 74 Locate
rps14 gene − 36797 37099 303 Locate
psaB gene − 37227 39431 2205 Locate
psaA gene − 39457 41709 2253 Locate
ycf3 gene − 42437 44393 1957 Locate
trnS-GGA gene + 44723 44809 87 Locate
rps4 gene − 45108 45713 606 Locate
trnT-UGU gene − 46106 46178 73 Locate
trnL-UAA gene + 46856 47429 574 Locate
trnF-GAA gene + 47721 47793 73 Locate
ndhJ gene − 48456 48932 477 Locate
ndhK gene − 49033 49710 678 Locate
ndhC gene − 49764 50126 363 Locate
trnV-UAC gene − 51092 51739 648 Locate
trnM-CAU gene + 51928 52000 73 Locate
atpE gene − 52218 52619 402 Locate
atpB gene − 52616 54112 1497 Locate
rbcL gene + 54916 56370 1455 Locate
accD gene + 57060 58526 1467 Locate
psaI gene + 59213 59323 111 Locate
ycf4 gene + 59759 60313 555 Locate
cemA gene + 60881 61570 690 Locate
petA gene + 61787 62749 963 Locate
psbJ gene − 63796 63918 123 Locate
psbL gene − 64056 64172 117 Locate
psbF gene − 64196 64315 120 Locate
psbE gene − 64330 64581 252 Locate
petL gene + 65509 65604 96 Locate
petG gene + 65779 65892 114 Locate
trnW-CCA gene − 66018 66091 74 Locate
trnP-UGG gene − 66261 66334 74 Locate
psaJ gene + 66609 66743 135 Locate
rpl33 gene + 67216 67416 201 Locate
rps18 gene + 67563 67868 306 Locate
rpl20 gene − 68048 68434 387 Locate
rps12 gene − 69201 69314 114 Locate
clpP gene − 69441 71305 1865 Locate
psbB gene + 71743 73269 1527 Locate
psbT gene + 73463 73570 108 Locate
psbN gene − 73631 73762 132 Locate
psbH gene + 73866 74087 222 Locate
petB gene + 74212 75592 1381 Locate
petD gene + 75787 77008 1222 Locate
rpoA gene − 77171 78184 1014 Locate
rps11 gene − 78256 78687 432 Locate
rpl36 gene − 78775 78888 114 Locate
infA gene − 78984 79217 234 Locate
rps8 gene − 79342 79755 414 Locate
rpl14 gene − 79946 80314 369 Locate
rpl16 gene − 80441 81747 1307 Locate
rps3 gene − 81894 82556 663 Locate
rpl22 gene − 82541 83005 465 Locate
rps19 gene − 83065 83343 279 Locate
rpl2 gene − 83396 84887 1492 Locate
rpl23 gene − 84906 85187 282 Locate
trnI-CAU gene − 85353 85426 74 Locate
ycf2 gene + 85515 92381 6867 Locate
ycf15 gene + 92424 92672 249 Locate
trnL-CAA gene − 92933 93013 81 Locate
ndhB gene − 93553 95764 2212 Locate
rps7 gene − 96039 96506 468 Locate
rps12 gene − 96560 97353 794 Locate
trnV-GAC gene + 98970 99041 72 Locate
rrn16 gene + 99269 100759 1491 Locate
trnI-GAU gene + 101049 102057 1009 Locate
trnA-UGC gene + 102122 103000 879 Locate
rrn23 gene + 103193 106002 2810 Locate
rrn4.5 gene + 106101 106203 103 Locate
rrn5 gene + 106459 106579 121 Locate
trnR-ACG gene + 106814 106887 74 Locate
trnN-GUU gene − 107454 107525 72 Locate
ndhF gene − 108915 111137 2223 Locate
rpl32 gene + 111643 111819 177 Locate
trnL-UAG gene + 112543 112622 80 Locate
ccsA gene + 112707 113678 972 Locate
ndhD gene − 113861 115381 1521 Locate
psaC gene − 115479 115724 246 Locate
ndhE gene − 115987 116292 306 Locate
ndhG gene − 116514 117044 531 Locate
ndhI gene − 117423 117920 498 Locate
ndhA gene − 118007 120166 2160 Locate
ndhH gene − 120168 121349 1182 Locate
rps15 gene − 121450 121722 273 Locate
ycf1 gene − 122103 127655 5553 Locate
trnN-GUU gene + 127981 128052 72 Locate
trnR-ACG gene − 128619 128692 74 Locate
rrn5 gene − 128927 129047 121 Locate
rrn4.5 gene − 129303 129405 103 Locate
rrn23 gene − 129504 132313 2810 Locate
trnA-UGC gene − 132506 133384 879 Locate
trnI-GAU gene − 133449 134457 1009 Locate
rrn16 gene − 134747 136237 1491 Locate
trnV-GAC gene − 136465 136536 72 Locate
rps12 gene + 138153 138946 794 Locate
rps7 gene + 139000 139467 468 Locate
ndhB gene + 139742 141953 2212 Locate
trnL-CAA gene + 142493 142573 81 Locate
ycf15 gene − 142834 143082 249 Locate
ycf2 gene − 143125 149991 6867 Locate
trnI-CAU gene + 150080 150153 74 Locate
rpl23 gene + 150319 150600 282 Locate
rpl2 gene + 150619 152110 1492 Locate
Status Available
Accession OR565932.1
Length 152,204 bp
GC content 38.4%
Annotated genes 132
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 14 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources