Paraphlomis paucisetosa chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · OR565915.1 · 2–76 bp · −
psbA · OR565915.1 · 307–1,365 bp · −
trnK-UUU · OR565915.1 · 1,598–4,189 bp · −
matK · OR565915.1 · 1,905–3,440 bp · −
rps16 · OR565915.1 · 5,100–6,240 bp · −
trnQ-UUG · OR565915.1 · 7,185–7,256 bp · −
trnS-GCU · OR565915.1 · 8,389–8,476 bp · −
atpA · OR565915.1 · 10,274–11,797 bp · −
atpF · OR565915.1 · 11,885–13,106 bp · −
atpH · OR565915.1 · 13,477–13,722 bp · −
atpI · OR565915.1 · 14,722–15,465 bp · −
rps2 · OR565915.1 · 15,696–16,406 bp · −
rpoC2 · OR565915.1 · 16,706–20,815 bp · −
rpoC1 · OR565915.1 · 20,970–23,800 bp · −
rpoB · OR565915.1 · 23,827–27,039 bp · −
psbM · OR565915.1 · 29,930–30,034 bp · −
trnD-GUC · OR565915.1 · 30,558–30,631 bp · −
trnY-GUA · OR565915.1 · 30,746–30,829 bp · −
trnE-UUC · OR565915.1 · 30,889–30,958 bp · −
trnS-UGA · OR565915.1 · 35,515–35,607 bp · −
trnfM-CAU · OR565915.1 · 36,570–36,643 bp · −
rps14 · OR565915.1 · 36,793–37,095 bp · −
psaB · OR565915.1 · 37,223–39,427 bp · −
psaA · OR565915.1 · 39,453–41,705 bp · −
ycf3 · OR565915.1 · 42,433–44,389 bp · −
rps4 · OR565915.1 · 45,104–45,709 bp · −
trnT-UGU · OR565915.1 · 46,100–46,172 bp · −
ndhJ · OR565915.1 · 48,450–48,944 bp · −
ndhK · OR565915.1 · 49,027–49,704 bp · −
ndhC · OR565915.1 · 49,758–50,120 bp · −
trnV-UAC · OR565915.1 · 51,087–51,733 bp · −
atpE · OR565915.1 · 52,212–52,613 bp · −
atpB · OR565915.1 · 52,610–54,100 bp · −
psbJ · OR565915.1 · 63,800–63,922 bp · −
psbL · OR565915.1 · 64,060–64,176 bp · −
psbF · OR565915.1 · 64,200–64,319 bp · −
psbE · OR565915.1 · 64,334–64,585 bp · −
trnW-CCA · OR565915.1 · 66,022–66,095 bp · −
trnP-UGG · OR565915.1 · 66,265–66,338 bp · −
rpl20 · OR565915.1 · 68,052–68,438 bp · −
rps12 · OR565915.1 · 69,205–69,318 bp · −
rps12 · OR565915.1 · 96,566–97,359 bp · −
clpP · OR565915.1 · 69,445–71,311 bp · −
psbN · OR565915.1 · 73,638–73,769 bp · −
rpoA · OR565915.1 · 77,177–78,190 bp · −
rps11 · OR565915.1 · 78,262–78,693 bp · −
rpl36 · OR565915.1 · 78,781–78,894 bp · −
infA · OR565915.1 · 78,990–79,223 bp · −
rps8 · OR565915.1 · 79,348–79,761 bp · −
rpl14 · OR565915.1 · 79,952–80,320 bp · −
rpl16 · OR565915.1 · 80,447–81,753 bp · −
rps3 · OR565915.1 · 81,900–82,562 bp · −
rpl22 · OR565915.1 · 82,547–83,011 bp · −
rps19 · OR565915.1 · 83,071–83,349 bp · −
rpl2 · OR565915.1 · 83,402–84,893 bp · −
rpl23 · OR565915.1 · 84,912–85,193 bp · −
trnI-CAU · OR565915.1 · 85,359–85,432 bp · −
trnL-CAA · OR565915.1 · 92,939–93,019 bp · −
ndhB · OR565915.1 · 93,559–95,770 bp · −
rps7 · OR565915.1 · 96,045–96,512 bp · −
trnN-GUU · OR565915.1 · 107,460–107,531 bp · −
ndhF · OR565915.1 · 108,921–111,143 bp · −
ndhD · OR565915.1 · 113,866–115,386 bp · −
psaC · OR565915.1 · 115,485–115,730 bp · −
ndhE · OR565915.1 · 115,993–116,298 bp · −
ndhG · OR565915.1 · 116,520–117,050 bp · −
ndhI · OR565915.1 · 117,429–117,926 bp · −
ndhA · OR565915.1 · 118,013–120,172 bp · −
ndhH · OR565915.1 · 120,174–121,355 bp · −
rps15 · OR565915.1 · 121,456–121,791 bp · −
ycf1 · OR565915.1 · 122,109–127,661 bp · −
trnR-ACG · OR565915.1 · 128,626–128,698 bp · −
rrn5 · OR565915.1 · 128,933–129,053 bp · −
rrn4.5 · OR565915.1 · 129,309–129,411 bp · −
rrn23 · OR565915.1 · 129,510–132,319 bp · −
trnA-UGC · OR565915.1 · 132,512–133,390 bp · −
trnI-GAU · OR565915.1 · 133,455–134,463 bp · −
rrn16 · OR565915.1 · 134,753–136,243 bp · −
trnV-GAC · OR565915.1 · 136,471–136,542 bp · −
ycf15 · OR565915.1 · 142,840–143,103 bp · −
ycf2 · OR565915.1 · 143,131–149,997 bp · −
psbK · OR565915.1 · 7,593–7,778 bp · +
psbI · OR565915.1 · 8,155–8,265 bp · +
trnG-UCC · OR565915.1 · 9,170–9,929 bp · +
trnR-UCU · OR565915.1 · 10,106–10,177 bp · +
trnC-GCA · OR565915.1 · 28,141–28,216 bp · +
petN · OR565915.1 · 29,053–29,142 bp · +
trnT-GGU · OR565915.1 · 31,532–31,602 bp · +
psbD · OR565915.1 · 32,854–33,915 bp · +
psbC · OR565915.1 · 33,863–35,284 bp · +
psbZ · OR565915.1 · 35,932–36,120 bp · +
trnG-GCC · OR565915.1 · 36,350–36,420 bp · +
trnS-GGA · OR565915.1 · 44,719–44,805 bp · +
trnL-UAA · OR565915.1 · 46,850–47,423 bp · +
trnF-GAA · OR565915.1 · 47,715–47,787 bp · +
trnM-CAU · OR565915.1 · 51,923–51,994 bp · +
rbcL · OR565915.1 · 54,889–56,364 bp · +
accD · OR565915.1 · 57,066–58,532 bp · +
psaI · OR565915.1 · 59,219–59,329 bp · +
ycf4 · OR565915.1 · 59,765–60,319 bp · +
cemA · OR565915.1 · 60,887–61,576 bp · +
petA · OR565915.1 · 61,793–62,755 bp · +
petL · OR565915.1 · 65,513–65,608 bp · +
petG · OR565915.1 · 65,783–65,896 bp · +
psaJ · OR565915.1 · 66,613–66,747 bp · +
rpl33 · OR565915.1 · 67,220–67,420 bp · +
rps18 · OR565915.1 · 67,567–67,872 bp · +
rps12 · OR565915.1 · 138,159–138,952 bp · +
psbB · OR565915.1 · 71,749–73,275 bp · +
psbT · OR565915.1 · 73,470–73,577 bp · +
psbH · OR565915.1 · 73,873–74,094 bp · +
petB · OR565915.1 · 74,219–75,598 bp · +
petD · OR565915.1 · 75,793–77,014 bp · +
ycf2 · OR565915.1 · 85,521–92,387 bp · +
ycf15 · OR565915.1 · 92,430–92,678 bp · +
trnV-GAC · OR565915.1 · 98,976–99,047 bp · +
rrn16 · OR565915.1 · 99,275–100,765 bp · +
trnI-GAU · OR565915.1 · 101,055–102,063 bp · +
trnA-UGC · OR565915.1 · 102,128–103,006 bp · +
rrn23 · OR565915.1 · 103,199–106,008 bp · +
rrn4.5 · OR565915.1 · 106,107–106,209 bp · +
rrn5 · OR565915.1 · 106,465–106,585 bp · +
trnR-ACG · OR565915.1 · 106,820–106,892 bp · +
rpl32 · OR565915.1 · 111,648–111,824 bp · +
trnL-UAG · OR565915.1 · 112,548–112,627 bp · +
ccsA · OR565915.1 · 112,712–113,683 bp · +
trnN-GUU · OR565915.1 · 127,987–128,058 bp · +
rps7 · OR565915.1 · 139,006–139,473 bp · +
ndhB · OR565915.1 · 139,748–141,959 bp · +
trnL-CAA · OR565915.1 · 142,499–142,579 bp · +
trnI-CAU · OR565915.1 · 150,086–150,159 bp · +
rpl23 · OR565915.1 · 150,325–150,606 bp · +
rpl2 · OR565915.1 · 150,625–152,116 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Paraphlomis paucisetosa
ANNOTATED PLASTOME
OR565915.1
152,210 bp · 132 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38052 76105 114158 152210 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
133 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 2 76 75 Locate
psbA gene − 307 1365 1059 Locate
trnK-UUU gene − 1598 4189 2592 Locate
matK gene − 1905 3440 1536 Locate
rps16 gene − 5100 6240 1141 Locate
trnQ-UUG gene − 7185 7256 72 Locate
psbK gene + 7593 7778 186 Locate
psbI gene + 8155 8265 111 Locate
trnS-GCU gene − 8389 8476 88 Locate
trnG-UCC gene + 9170 9929 760 Locate
trnR-UCU gene + 10106 10177 72 Locate
atpA gene − 10274 11797 1524 Locate
atpF gene − 11885 13106 1222 Locate
atpH gene − 13477 13722 246 Locate
atpI gene − 14722 15465 744 Locate
rps2 gene − 15696 16406 711 Locate
rpoC2 gene − 16706 20815 4110 Locate
rpoC1 gene − 20970 23800 2831 Locate
rpoB gene − 23827 27039 3213 Locate
trnC-GCA gene + 28141 28216 76 Locate
petN gene + 29053 29142 90 Locate
psbM gene − 29930 30034 105 Locate
trnD-GUC gene − 30558 30631 74 Locate
trnY-GUA gene − 30746 30829 84 Locate
trnE-UUC gene − 30889 30958 70 Locate
trnT-GGU gene + 31532 31602 71 Locate
psbD gene + 32854 33915 1062 Locate
psbC gene + 33863 35284 1422 Locate
trnS-UGA gene − 35515 35607 93 Locate
psbZ gene + 35932 36120 189 Locate
trnG-GCC gene + 36350 36420 71 Locate
trnfM-CAU gene − 36570 36643 74 Locate
rps14 gene − 36793 37095 303 Locate
psaB gene − 37223 39427 2205 Locate
psaA gene − 39453 41705 2253 Locate
ycf3 gene − 42433 44389 1957 Locate
trnS-GGA gene + 44719 44805 87 Locate
rps4 gene − 45104 45709 606 Locate
trnT-UGU gene − 46100 46172 73 Locate
trnL-UAA gene + 46850 47423 574 Locate
trnF-GAA gene + 47715 47787 73 Locate
ndhJ gene − 48450 48944 495 Locate
ndhK gene − 49027 49704 678 Locate
ndhC gene − 49758 50120 363 Locate
trnV-UAC gene − 51087 51733 647 Locate
trnM-CAU gene + 51923 51994 72 Locate
atpE gene − 52212 52613 402 Locate
atpB gene − 52610 54100 1491 Locate
rbcL gene + 54889 56364 1476 Locate
accD gene + 57066 58532 1467 Locate
psaI gene + 59219 59329 111 Locate
ycf4 gene + 59765 60319 555 Locate
cemA gene + 60887 61576 690 Locate
petA gene + 61793 62755 963 Locate
psbJ gene − 63800 63922 123 Locate
psbL gene − 64060 64176 117 Locate
psbF gene − 64200 64319 120 Locate
psbE gene − 64334 64585 252 Locate
petL gene + 65513 65608 96 Locate
petG gene + 65783 65896 114 Locate
trnW-CCA gene − 66022 66095 74 Locate
trnP-UGG gene − 66265 66338 74 Locate
psaJ gene + 66613 66747 135 Locate
rpl33 gene + 67220 67420 201 Locate
rps18 gene + 67567 67872 306 Locate
rpl20 gene − 68052 68438 387 Locate
rps12 gene − 69205 69318 114 Locate
clpP gene − 69445 71311 1867 Locate
psbB gene + 71749 73275 1527 Locate
psbT gene + 73470 73577 108 Locate
psbN gene − 73638 73769 132 Locate
psbH gene + 73873 74094 222 Locate
petB gene + 74219 75598 1380 Locate
petD gene + 75793 77014 1222 Locate
rpoA gene − 77177 78190 1014 Locate
rps11 gene − 78262 78693 432 Locate
rpl36 gene − 78781 78894 114 Locate
infA gene − 78990 79223 234 Locate
rps8 gene − 79348 79761 414 Locate
rpl14 gene − 79952 80320 369 Locate
rpl16 gene − 80447 81753 1307 Locate
rps3 gene − 81900 82562 663 Locate
rpl22 gene − 82547 83011 465 Locate
rps19 gene − 83071 83349 279 Locate
rpl2 gene − 83402 84893 1492 Locate
rpl23 gene − 84912 85193 282 Locate
trnI-CAU gene − 85359 85432 74 Locate
ycf2 gene + 85521 92387 6867 Locate
ycf15 gene + 92430 92678 249 Locate
trnL-CAA gene − 92939 93019 81 Locate
ndhB gene − 93559 95770 2212 Locate
rps7 gene − 96045 96512 468 Locate
rps12 gene − 96566 97359 794 Locate
trnV-GAC gene + 98976 99047 72 Locate
rrn16 gene + 99275 100765 1491 Locate
trnI-GAU gene + 101055 102063 1009 Locate
trnA-UGC gene + 102128 103006 879 Locate
rrn23 gene + 103199 106008 2810 Locate
rrn4.5 gene + 106107 106209 103 Locate
rrn5 gene + 106465 106585 121 Locate
trnR-ACG gene + 106820 106892 73 Locate
trnN-GUU gene − 107460 107531 72 Locate
ndhF gene − 108921 111143 2223 Locate
rpl32 gene + 111648 111824 177 Locate
trnL-UAG gene + 112548 112627 80 Locate
ccsA gene + 112712 113683 972 Locate
ndhD gene − 113866 115386 1521 Locate
psaC gene − 115485 115730 246 Locate
ndhE gene − 115993 116298 306 Locate
ndhG gene − 116520 117050 531 Locate
ndhI gene − 117429 117926 498 Locate
ndhA gene − 118013 120172 2160 Locate
ndhH gene − 120174 121355 1182 Locate
rps15 gene − 121456 121791 336 Locate
ycf1 gene − 122109 127661 5553 Locate
trnN-GUU gene + 127987 128058 72 Locate
trnR-ACG gene − 128626 128698 73 Locate
rrn5 gene − 128933 129053 121 Locate
rrn4.5 gene − 129309 129411 103 Locate
rrn23 gene − 129510 132319 2810 Locate
trnA-UGC gene − 132512 133390 879 Locate
trnI-GAU gene − 133455 134463 1009 Locate
rrn16 gene − 134753 136243 1491 Locate
trnV-GAC gene − 136471 136542 72 Locate
rps12 gene + 138159 138952 794 Locate
rps7 gene + 139006 139473 468 Locate
ndhB gene + 139748 141959 2212 Locate
trnL-CAA gene + 142499 142579 81 Locate
ycf15 gene − 142840 143103 264 Locate
ycf2 gene − 143131 149997 6867 Locate
trnI-CAU gene + 150086 150159 74 Locate
rpl23 gene + 150325 150606 282 Locate
rpl2 gene + 150625 152116 1492 Locate
Status Available
Accession OR565915.1
Length 152,210 bp
GC content 38.4%
Annotated genes 132
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 14 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources