Paraphlomis seticalyx chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · OR565940.1 · 2–76 bp · −
psbA · OR565940.1 · 308–1,366 bp · −
trnK-UUU · OR565940.1 · 1,599–4,189 bp · −
matK · OR565940.1 · 1,905–3,440 bp · −
rps16 · OR565940.1 · 5,115–6,255 bp · −
trnQ-UUG · OR565940.1 · 7,203–7,275 bp · −
trnS-GCU · OR565940.1 · 8,407–8,494 bp · −
atpA · OR565940.1 · 10,291–11,814 bp · −
atpF · OR565940.1 · 11,902–13,123 bp · −
atpH · OR565940.1 · 13,492–13,737 bp · −
atpI · OR565940.1 · 14,743–15,486 bp · −
rps2 · OR565940.1 · 15,717–16,427 bp · −
rpoC2 · OR565940.1 · 16,727–20,836 bp · −
rpoC1 · OR565940.1 · 20,991–23,822 bp · −
rpoB · OR565940.1 · 23,849–27,061 bp · −
psbM · OR565940.1 · 29,951–30,055 bp · −
trnD-GUC · OR565940.1 · 30,579–30,652 bp · −
trnY-GUA · OR565940.1 · 30,767–30,850 bp · −
trnE-UUC · OR565940.1 · 30,910–30,982 bp · −
trnS-UGA · OR565940.1 · 35,534–35,626 bp · −
trnfM-CAU · OR565940.1 · 36,589–36,662 bp · −
rps14 · OR565940.1 · 36,812–37,114 bp · −
psaB · OR565940.1 · 37,242–39,446 bp · −
psaA · OR565940.1 · 39,472–41,724 bp · −
ycf3 · OR565940.1 · 42,452–44,409 bp · −
rps4 · OR565940.1 · 45,124–45,729 bp · −
trnT-UGU · OR565940.1 · 46,120–46,192 bp · −
ndhJ · OR565940.1 · 48,485–48,961 bp · −
ndhK · OR565940.1 · 49,062–49,739 bp · −
ndhC · OR565940.1 · 49,793–50,155 bp · −
trnV-UAC · OR565940.1 · 51,121–51,767 bp · −
atpE · OR565940.1 · 52,246–52,647 bp · −
atpB · OR565940.1 · 52,644–54,134 bp · −
psbJ · OR565940.1 · 63,806–63,928 bp · −
psbL · OR565940.1 · 64,066–64,182 bp · −
psbF · OR565940.1 · 64,206–64,325 bp · −
psbE · OR565940.1 · 64,340–64,591 bp · −
trnW-CCA · OR565940.1 · 66,028–66,101 bp · −
trnP-UGG · OR565940.1 · 66,271–66,344 bp · −
rpl20 · OR565940.1 · 68,051–68,437 bp · −
rps12 · OR565940.1 · 69,223–69,336 bp · −
rps12 · OR565940.1 · 96,573–97,366 bp · −
clpP · OR565940.1 · 69,463–71,327 bp · −
psbN · OR565940.1 · 73,654–73,785 bp · −
rpoA · OR565940.1 · 77,193–78,206 bp · −
rps11 · OR565940.1 · 78,278–78,709 bp · −
rpl36 · OR565940.1 · 78,797–78,910 bp · −
infA · OR565940.1 · 79,006–79,239 bp · −
rps8 · OR565940.1 · 79,364–79,777 bp · −
rpl14 · OR565940.1 · 79,968–80,336 bp · −
rpl16 · OR565940.1 · 80,463–81,769 bp · −
rps3 · OR565940.1 · 81,916–82,578 bp · −
rpl22 · OR565940.1 · 82,563–83,027 bp · −
rps19 · OR565940.1 · 83,087–83,365 bp · −
rpl2 · OR565940.1 · 83,418–84,909 bp · −
rpl23 · OR565940.1 · 84,928–85,209 bp · −
trnI-CAU · OR565940.1 · 85,375–85,448 bp · −
trnL-CAA · OR565940.1 · 92,946–93,026 bp · −
ndhB · OR565940.1 · 93,566–95,777 bp · −
rps7 · OR565940.1 · 96,052–96,519 bp · −
trnN-GUU · OR565940.1 · 107,467–107,538 bp · −
ndhF · OR565940.1 · 108,928–111,150 bp · −
ndhD · OR565940.1 · 113,873–115,393 bp · −
psaC · OR565940.1 · 115,492–115,737 bp · −
ndhE · OR565940.1 · 116,000–116,305 bp · −
ndhG · OR565940.1 · 116,527–117,057 bp · −
ndhI · OR565940.1 · 117,436–117,933 bp · −
ndhA · OR565940.1 · 118,020–120,179 bp · −
ndhH · OR565940.1 · 120,181–121,362 bp · −
rps15 · OR565940.1 · 121,463–121,735 bp · −
ycf1 · OR565940.1 · 122,116–127,668 bp · −
trnR-ACG · OR565940.1 · 128,632–128,705 bp · −
rrn5 · OR565940.1 · 128,940–129,060 bp · −
rrn4.5 · OR565940.1 · 129,316–129,418 bp · −
rrn23 · OR565940.1 · 129,517–132,326 bp · −
trnA-UGC · OR565940.1 · 132,519–133,397 bp · −
trnI-GAU · OR565940.1 · 133,462–134,470 bp · −
rrn16 · OR565940.1 · 134,760–136,250 bp · −
trnV-GAC · OR565940.1 · 136,478–136,549 bp · −
ycf15 · OR565940.1 · 142,847–143,095 bp · −
ycf2 · OR565940.1 · 143,138–149,995 bp · −
psbK · OR565940.1 · 7,612–7,797 bp · +
psbI · OR565940.1 · 8,172–8,282 bp · +
trnG-UCC · OR565940.1 · 9,187–9,946 bp · +
trnR-UCU · OR565940.1 · 10,123–10,194 bp · +
trnC-GCA · OR565940.1 · 28,162–28,237 bp · +
petN · OR565940.1 · 29,074–29,163 bp · +
trnT-GGU · OR565940.1 · 31,553–31,623 bp · +
psbD · OR565940.1 · 32,874–33,935 bp · +
psbC · OR565940.1 · 33,883–35,304 bp · +
psbZ · OR565940.1 · 35,951–36,139 bp · +
trnG-GCC · OR565940.1 · 36,369–36,439 bp · +
trnS-GGA · OR565940.1 · 44,739–44,825 bp · +
trnL-UAA · OR565940.1 · 46,872–47,445 bp · +
trnF-GAA · OR565940.1 · 47,737–47,809 bp · +
trnM-CAU · OR565940.1 · 51,956–52,028 bp · +
rbcL · OR565940.1 · 54,923–56,398 bp · +
accD · OR565940.1 · 57,072–58,538 bp · +
psaI · OR565940.1 · 59,225–59,335 bp · +
ycf4 · OR565940.1 · 59,771–60,325 bp · +
cemA · OR565940.1 · 60,893–61,582 bp · +
petA · OR565940.1 · 61,799–62,761 bp · +
petL · OR565940.1 · 65,519–65,614 bp · +
petG · OR565940.1 · 65,789–65,902 bp · +
psaJ · OR565940.1 · 66,619–66,753 bp · +
rpl33 · OR565940.1 · 67,219–67,419 bp · +
rps18 · OR565940.1 · 67,566–67,871 bp · +
rps12 · OR565940.1 · 138,166–138,959 bp · +
psbB · OR565940.1 · 71,765–73,291 bp · +
psbT · OR565940.1 · 73,486–73,593 bp · +
psbH · OR565940.1 · 73,889–74,110 bp · +
petB · OR565940.1 · 74,235–75,614 bp · +
petD · OR565940.1 · 75,809–77,030 bp · +
ycf2 · OR565940.1 · 85,537–92,394 bp · +
ycf15 · OR565940.1 · 92,437–92,685 bp · +
trnV-GAC · OR565940.1 · 98,983–99,054 bp · +
rrn16 · OR565940.1 · 99,282–100,772 bp · +
trnI-GAU · OR565940.1 · 101,062–102,070 bp · +
trnA-UGC · OR565940.1 · 102,135–103,013 bp · +
rrn23 · OR565940.1 · 103,206–106,015 bp · +
rrn4.5 · OR565940.1 · 106,114–106,216 bp · +
rrn5 · OR565940.1 · 106,472–106,592 bp · +
trnR-ACG · OR565940.1 · 106,827–106,900 bp · +
rpl32 · OR565940.1 · 111,655–111,831 bp · +
trnL-UAG · OR565940.1 · 112,555–112,634 bp · +
ccsA · OR565940.1 · 112,719–113,690 bp · +
trnN-GUU · OR565940.1 · 127,994–128,065 bp · +
rps7 · OR565940.1 · 139,013–139,480 bp · +
ndhB · OR565940.1 · 139,755–141,966 bp · +
trnL-CAA · OR565940.1 · 142,506–142,586 bp · +
trnI-CAU · OR565940.1 · 150,084–150,157 bp · +
rpl23 · OR565940.1 · 150,323–150,604 bp · +
rpl2 · OR565940.1 · 150,623–152,114 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Paraphlomis seticalyx
ANNOTATED PLASTOME
OR565940.1
152,208 bp · 132 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38052 76104 114156 152208 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
133 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 2 76 75 Locate
psbA gene − 308 1366 1059 Locate
trnK-UUU gene − 1599 4189 2591 Locate
matK gene − 1905 3440 1536 Locate
rps16 gene − 5115 6255 1141 Locate
trnQ-UUG gene − 7203 7275 73 Locate
psbK gene + 7612 7797 186 Locate
psbI gene + 8172 8282 111 Locate
trnS-GCU gene − 8407 8494 88 Locate
trnG-UCC gene + 9187 9946 760 Locate
trnR-UCU gene + 10123 10194 72 Locate
atpA gene − 10291 11814 1524 Locate
atpF gene − 11902 13123 1222 Locate
atpH gene − 13492 13737 246 Locate
atpI gene − 14743 15486 744 Locate
rps2 gene − 15717 16427 711 Locate
rpoC2 gene − 16727 20836 4110 Locate
rpoC1 gene − 20991 23822 2832 Locate
rpoB gene − 23849 27061 3213 Locate
trnC-GCA gene + 28162 28237 76 Locate
petN gene + 29074 29163 90 Locate
psbM gene − 29951 30055 105 Locate
trnD-GUC gene − 30579 30652 74 Locate
trnY-GUA gene − 30767 30850 84 Locate
trnE-UUC gene − 30910 30982 73 Locate
trnT-GGU gene + 31553 31623 71 Locate
psbD gene + 32874 33935 1062 Locate
psbC gene + 33883 35304 1422 Locate
trnS-UGA gene − 35534 35626 93 Locate
psbZ gene + 35951 36139 189 Locate
trnG-GCC gene + 36369 36439 71 Locate
trnfM-CAU gene − 36589 36662 74 Locate
rps14 gene − 36812 37114 303 Locate
psaB gene − 37242 39446 2205 Locate
psaA gene − 39472 41724 2253 Locate
ycf3 gene − 42452 44409 1958 Locate
trnS-GGA gene + 44739 44825 87 Locate
rps4 gene − 45124 45729 606 Locate
trnT-UGU gene − 46120 46192 73 Locate
trnL-UAA gene + 46872 47445 574 Locate
trnF-GAA gene + 47737 47809 73 Locate
ndhJ gene − 48485 48961 477 Locate
ndhK gene − 49062 49739 678 Locate
ndhC gene − 49793 50155 363 Locate
trnV-UAC gene − 51121 51767 647 Locate
trnM-CAU gene + 51956 52028 73 Locate
atpE gene − 52246 52647 402 Locate
atpB gene − 52644 54134 1491 Locate
rbcL gene + 54923 56398 1476 Locate
accD gene + 57072 58538 1467 Locate
psaI gene + 59225 59335 111 Locate
ycf4 gene + 59771 60325 555 Locate
cemA gene + 60893 61582 690 Locate
petA gene + 61799 62761 963 Locate
psbJ gene − 63806 63928 123 Locate
psbL gene − 64066 64182 117 Locate
psbF gene − 64206 64325 120 Locate
psbE gene − 64340 64591 252 Locate
petL gene + 65519 65614 96 Locate
petG gene + 65789 65902 114 Locate
trnW-CCA gene − 66028 66101 74 Locate
trnP-UGG gene − 66271 66344 74 Locate
psaJ gene + 66619 66753 135 Locate
rpl33 gene + 67219 67419 201 Locate
rps18 gene + 67566 67871 306 Locate
rpl20 gene − 68051 68437 387 Locate
rps12 gene − 69223 69336 114 Locate
clpP gene − 69463 71327 1865 Locate
psbB gene + 71765 73291 1527 Locate
psbT gene + 73486 73593 108 Locate
psbN gene − 73654 73785 132 Locate
psbH gene + 73889 74110 222 Locate
petB gene + 74235 75614 1380 Locate
petD gene + 75809 77030 1222 Locate
rpoA gene − 77193 78206 1014 Locate
rps11 gene − 78278 78709 432 Locate
rpl36 gene − 78797 78910 114 Locate
infA gene − 79006 79239 234 Locate
rps8 gene − 79364 79777 414 Locate
rpl14 gene − 79968 80336 369 Locate
rpl16 gene − 80463 81769 1307 Locate
rps3 gene − 81916 82578 663 Locate
rpl22 gene − 82563 83027 465 Locate
rps19 gene − 83087 83365 279 Locate
rpl2 gene − 83418 84909 1492 Locate
rpl23 gene − 84928 85209 282 Locate
trnI-CAU gene − 85375 85448 74 Locate
ycf2 gene + 85537 92394 6858 Locate
ycf15 gene + 92437 92685 249 Locate
trnL-CAA gene − 92946 93026 81 Locate
ndhB gene − 93566 95777 2212 Locate
rps7 gene − 96052 96519 468 Locate
rps12 gene − 96573 97366 794 Locate
trnV-GAC gene + 98983 99054 72 Locate
rrn16 gene + 99282 100772 1491 Locate
trnI-GAU gene + 101062 102070 1009 Locate
trnA-UGC gene + 102135 103013 879 Locate
rrn23 gene + 103206 106015 2810 Locate
rrn4.5 gene + 106114 106216 103 Locate
rrn5 gene + 106472 106592 121 Locate
trnR-ACG gene + 106827 106900 74 Locate
trnN-GUU gene − 107467 107538 72 Locate
ndhF gene − 108928 111150 2223 Locate
rpl32 gene + 111655 111831 177 Locate
trnL-UAG gene + 112555 112634 80 Locate
ccsA gene + 112719 113690 972 Locate
ndhD gene − 113873 115393 1521 Locate
psaC gene − 115492 115737 246 Locate
ndhE gene − 116000 116305 306 Locate
ndhG gene − 116527 117057 531 Locate
ndhI gene − 117436 117933 498 Locate
ndhA gene − 118020 120179 2160 Locate
ndhH gene − 120181 121362 1182 Locate
rps15 gene − 121463 121735 273 Locate
ycf1 gene − 122116 127668 5553 Locate
trnN-GUU gene + 127994 128065 72 Locate
trnR-ACG gene − 128632 128705 74 Locate
rrn5 gene − 128940 129060 121 Locate
rrn4.5 gene − 129316 129418 103 Locate
rrn23 gene − 129517 132326 2810 Locate
trnA-UGC gene − 132519 133397 879 Locate
trnI-GAU gene − 133462 134470 1009 Locate
rrn16 gene − 134760 136250 1491 Locate
trnV-GAC gene − 136478 136549 72 Locate
rps12 gene + 138166 138959 794 Locate
rps7 gene + 139013 139480 468 Locate
ndhB gene + 139755 141966 2212 Locate
trnL-CAA gene + 142506 142586 81 Locate
ycf15 gene − 142847 143095 249 Locate
ycf2 gene − 143138 149995 6858 Locate
trnI-CAU gene + 150084 150157 74 Locate
rpl23 gene + 150323 150604 282 Locate
rpl2 gene + 150623 152114 1492 Locate
Status Available
Accession OR565940.1
Length 152,208 bp
GC content 38.4%
Annotated genes 132
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 14 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources