Paraphlomis setulosa chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · OR565960.1 · 2–76 bp · −
psbA · OR565960.1 · 307–1,365 bp · −
trnK-UUU · OR565960.1 · 1,598–4,181 bp · −
matK · OR565960.1 · 1,897–3,432 bp · −
rps16 · OR565960.1 · 5,109–6,254 bp · −
trnQ-UUG · OR565960.1 · 7,202–7,274 bp · −
trnS-GCU · OR565960.1 · 8,408–8,495 bp · −
atpA · OR565960.1 · 10,281–11,804 bp · −
atpF · OR565960.1 · 11,892–13,112 bp · −
atpH · OR565960.1 · 13,478–13,723 bp · −
atpI · OR565960.1 · 14,774–15,517 bp · −
rps2 · OR565960.1 · 15,748–16,458 bp · −
rpoC2 · OR565960.1 · 16,679–20,866 bp · −
rpoC1 · OR565960.1 · 21,021–23,851 bp · −
rpoB · OR565960.1 · 23,878–27,090 bp · −
psbM · OR565960.1 · 29,981–30,085 bp · −
trnD-GUC · OR565960.1 · 30,609–30,682 bp · −
trnY-GUA · OR565960.1 · 30,797–30,880 bp · −
trnE-UUC · OR565960.1 · 30,940–31,012 bp · −
trnS-UGA · OR565960.1 · 35,556–35,648 bp · −
trnfM-CAU · OR565960.1 · 36,598–36,671 bp · −
rps14 · OR565960.1 · 36,821–37,123 bp · −
psaB · OR565960.1 · 37,251–39,455 bp · −
psaA · OR565960.1 · 39,481–41,733 bp · −
ycf3 · OR565960.1 · 42,461–44,414 bp · −
rps4 · OR565960.1 · 45,115–45,720 bp · −
trnT-UGU · OR565960.1 · 46,111–46,183 bp · −
ndhJ · OR565960.1 · 48,463–48,939 bp · −
ndhK · OR565960.1 · 49,040–49,717 bp · −
ndhC · OR565960.1 · 49,771–50,133 bp · −
trnV-UAC · OR565960.1 · 51,099–51,751 bp · −
atpE · OR565960.1 · 52,230–52,631 bp · −
atpB · OR565960.1 · 52,628–54,124 bp · −
psbJ · OR565960.1 · 63,772–63,894 bp · −
psbL · OR565960.1 · 64,032–64,148 bp · −
psbF · OR565960.1 · 64,172–64,291 bp · −
psbE · OR565960.1 · 64,306–64,557 bp · −
trnW-CCA · OR565960.1 · 65,998–66,071 bp · −
trnP-UGG · OR565960.1 · 66,241–66,314 bp · −
rpl20 · OR565960.1 · 68,027–68,413 bp · −
rps12 · OR565960.1 · 69,180–69,293 bp · −
rps12 · OR565960.1 · 96,586–97,379 bp · −
clpP · OR565960.1 · 69,420–71,284 bp · −
psbN · OR565960.1 · 73,609–73,740 bp · −
rpoA · OR565960.1 · 77,139–78,152 bp · −
rps11 · OR565960.1 · 78,224–78,655 bp · −
rpl36 · OR565960.1 · 78,743–78,856 bp · −
infA · OR565960.1 · 78,952–79,185 bp · −
rps8 · OR565960.1 · 79,314–79,727 bp · −
rpl14 · OR565960.1 · 79,918–80,286 bp · −
rpl16 · OR565960.1 · 80,454–81,760 bp · −
rps3 · OR565960.1 · 81,907–82,569 bp · −
rpl22 · OR565960.1 · 82,554–83,018 bp · −
rps19 · OR565960.1 · 83,078–83,356 bp · −
rpl2 · OR565960.1 · 83,408–84,899 bp · −
rpl23 · OR565960.1 · 84,918–85,199 bp · −
trnI-CAU · OR565960.1 · 85,365–85,438 bp · −
trnL-CAA · OR565960.1 · 92,963–93,043 bp · −
ndhB · OR565960.1 · 93,579–95,790 bp · −
rps7 · OR565960.1 · 96,065–96,532 bp · −
trnN-GUU · OR565960.1 · 107,480–107,551 bp · −
ndhF · OR565960.1 · 108,941–111,157 bp · −
ndhD · OR565960.1 · 113,880–115,400 bp · −
psaC · OR565960.1 · 115,500–115,745 bp · −
ndhE · OR565960.1 · 116,008–116,313 bp · −
ndhG · OR565960.1 · 116,535–117,065 bp · −
ndhI · OR565960.1 · 117,444–117,950 bp · −
ndhA · OR565960.1 · 118,037–120,195 bp · −
ndhH · OR565960.1 · 120,197–121,378 bp · −
rps15 · OR565960.1 · 121,490–121,822 bp · −
ycf1 · OR565960.1 · 122,140–127,692 bp · −
trnR-ACG · OR565960.1 · 128,657–128,729 bp · −
rrn5 · OR565960.1 · 128,964–129,084 bp · −
rrn4.5 · OR565960.1 · 129,340–129,442 bp · −
rrn23 · OR565960.1 · 129,541–132,350 bp · −
trnA-UGC · OR565960.1 · 132,543–133,421 bp · −
trnI-GAU · OR565960.1 · 133,486–134,494 bp · −
rrn16 · OR565960.1 · 134,784–136,274 bp · −
trnV-GAC · OR565960.1 · 136,502–136,573 bp · −
ycf15 · OR565960.1 · 142,867–143,115 bp · −
ycf2 · OR565960.1 · 143,158–150,042 bp · −
psbK · OR565960.1 · 7,611–7,796 bp · +
psbI · OR565960.1 · 8,175–8,285 bp · +
trnG-UCC · OR565960.1 · 9,186–9,936 bp · +
trnR-UCU · OR565960.1 · 10,113–10,184 bp · +
trnC-GCA · OR565960.1 · 28,192–28,267 bp · +
petN · OR565960.1 · 29,098–29,193 bp · +
trnT-GGU · OR565960.1 · 31,572–31,642 bp · +
psbD · OR565960.1 · 32,893–33,954 bp · +
psbC · OR565960.1 · 33,902–35,323 bp · +
psbZ · OR565960.1 · 35,965–36,153 bp · +
trnG-GCC · OR565960.1 · 36,378–36,448 bp · +
trnS-GGA · OR565960.1 · 44,731–44,817 bp · +
trnL-UAA · OR565960.1 · 46,857–47,430 bp · +
trnF-GAA · OR565960.1 · 47,722–47,794 bp · +
trnM-CAU · OR565960.1 · 51,940–52,012 bp · +
rbcL · OR565960.1 · 54,906–56,360 bp · +
accD · OR565960.1 · 57,046–58,512 bp · +
psaI · OR565960.1 · 59,201–59,311 bp · +
ycf4 · OR565960.1 · 59,742–60,296 bp · +
cemA · OR565960.1 · 60,857–61,546 bp · +
petA · OR565960.1 · 61,763–62,725 bp · +
petL · OR565960.1 · 65,489–65,584 bp · +
petG · OR565960.1 · 65,759–65,872 bp · +
psaJ · OR565960.1 · 66,589–66,723 bp · +
rpl33 · OR565960.1 · 67,195–67,395 bp · +
rps18 · OR565960.1 · 67,542–67,847 bp · +
rps12 · OR565960.1 · 138,190–138,983 bp · +
psbB · OR565960.1 · 71,722–73,248 bp · +
psbT · OR565960.1 · 73,441–73,548 bp · +
psbH · OR565960.1 · 73,844–74,065 bp · +
petB · OR565960.1 · 74,180–75,560 bp · +
petD · OR565960.1 · 75,755–76,976 bp · +
ycf2 · OR565960.1 · 85,527–92,411 bp · +
ycf15 · OR565960.1 · 92,454–92,702 bp · +
trnV-GAC · OR565960.1 · 98,996–99,067 bp · +
rrn16 · OR565960.1 · 99,295–100,785 bp · +
trnI-GAU · OR565960.1 · 101,075–102,083 bp · +
trnA-UGC · OR565960.1 · 102,148–103,026 bp · +
rrn23 · OR565960.1 · 103,219–106,028 bp · +
rrn4.5 · OR565960.1 · 106,127–106,229 bp · +
rrn5 · OR565960.1 · 106,485–106,605 bp · +
trnR-ACG · OR565960.1 · 106,840–106,912 bp · +
rpl32 · OR565960.1 · 111,662–111,838 bp · +
trnL-UAG · OR565960.1 · 112,562–112,641 bp · +
ccsA · OR565960.1 · 112,726–113,697 bp · +
trnN-GUU · OR565960.1 · 128,018–128,089 bp · +
rps7 · OR565960.1 · 139,037–139,504 bp · +
ndhB · OR565960.1 · 139,779–141,990 bp · +
trnL-CAA · OR565960.1 · 142,526–142,606 bp · +
trnI-CAU · OR565960.1 · 150,131–150,204 bp · +
rpl23 · OR565960.1 · 150,370–150,651 bp · +
rpl2 · OR565960.1 · 150,670–152,161 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Paraphlomis setulosa
ANNOTATED PLASTOME
OR565960.1
152,254 bp · 132 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38064 76127 114190 152254 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
133 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 2 76 75 Locate
psbA gene − 307 1365 1059 Locate
trnK-UUU gene − 1598 4181 2584 Locate
matK gene − 1897 3432 1536 Locate
rps16 gene − 5109 6254 1146 Locate
trnQ-UUG gene − 7202 7274 73 Locate
psbK gene + 7611 7796 186 Locate
psbI gene + 8175 8285 111 Locate
trnS-GCU gene − 8408 8495 88 Locate
trnG-UCC gene + 9186 9936 751 Locate
trnR-UCU gene + 10113 10184 72 Locate
atpA gene − 10281 11804 1524 Locate
atpF gene − 11892 13112 1221 Locate
atpH gene − 13478 13723 246 Locate
atpI gene − 14774 15517 744 Locate
rps2 gene − 15748 16458 711 Locate
rpoC2 gene − 16679 20866 4188 Locate
rpoC1 gene − 21021 23851 2831 Locate
rpoB gene − 23878 27090 3213 Locate
trnC-GCA gene + 28192 28267 76 Locate
petN gene + 29098 29193 96 Locate
psbM gene − 29981 30085 105 Locate
trnD-GUC gene − 30609 30682 74 Locate
trnY-GUA gene − 30797 30880 84 Locate
trnE-UUC gene − 30940 31012 73 Locate
trnT-GGU gene + 31572 31642 71 Locate
psbD gene + 32893 33954 1062 Locate
psbC gene + 33902 35323 1422 Locate
trnS-UGA gene − 35556 35648 93 Locate
psbZ gene + 35965 36153 189 Locate
trnG-GCC gene + 36378 36448 71 Locate
trnfM-CAU gene − 36598 36671 74 Locate
rps14 gene − 36821 37123 303 Locate
psaB gene − 37251 39455 2205 Locate
psaA gene − 39481 41733 2253 Locate
ycf3 gene − 42461 44414 1954 Locate
trnS-GGA gene + 44731 44817 87 Locate
rps4 gene − 45115 45720 606 Locate
trnT-UGU gene − 46111 46183 73 Locate
trnL-UAA gene + 46857 47430 574 Locate
trnF-GAA gene + 47722 47794 73 Locate
ndhJ gene − 48463 48939 477 Locate
ndhK gene − 49040 49717 678 Locate
ndhC gene − 49771 50133 363 Locate
trnV-UAC gene − 51099 51751 653 Locate
trnM-CAU gene + 51940 52012 73 Locate
atpE gene − 52230 52631 402 Locate
atpB gene − 52628 54124 1497 Locate
rbcL gene + 54906 56360 1455 Locate
accD gene + 57046 58512 1467 Locate
psaI gene + 59201 59311 111 Locate
ycf4 gene + 59742 60296 555 Locate
cemA gene + 60857 61546 690 Locate
petA gene + 61763 62725 963 Locate
psbJ gene − 63772 63894 123 Locate
psbL gene − 64032 64148 117 Locate
psbF gene − 64172 64291 120 Locate
psbE gene − 64306 64557 252 Locate
petL gene + 65489 65584 96 Locate
petG gene + 65759 65872 114 Locate
trnW-CCA gene − 65998 66071 74 Locate
trnP-UGG gene − 66241 66314 74 Locate
psaJ gene + 66589 66723 135 Locate
rpl33 gene + 67195 67395 201 Locate
rps18 gene + 67542 67847 306 Locate
rpl20 gene − 68027 68413 387 Locate
rps12 gene − 69180 69293 114 Locate
clpP gene − 69420 71284 1865 Locate
psbB gene + 71722 73248 1527 Locate
psbT gene + 73441 73548 108 Locate
psbN gene − 73609 73740 132 Locate
psbH gene + 73844 74065 222 Locate
petB gene + 74180 75560 1381 Locate
petD gene + 75755 76976 1222 Locate
rpoA gene − 77139 78152 1014 Locate
rps11 gene − 78224 78655 432 Locate
rpl36 gene − 78743 78856 114 Locate
infA gene − 78952 79185 234 Locate
rps8 gene − 79314 79727 414 Locate
rpl14 gene − 79918 80286 369 Locate
rpl16 gene − 80454 81760 1307 Locate
rps3 gene − 81907 82569 663 Locate
rpl22 gene − 82554 83018 465 Locate
rps19 gene − 83078 83356 279 Locate
rpl2 gene − 83408 84899 1492 Locate
rpl23 gene − 84918 85199 282 Locate
trnI-CAU gene − 85365 85438 74 Locate
ycf2 gene + 85527 92411 6885 Locate
ycf15 gene + 92454 92702 249 Locate
trnL-CAA gene − 92963 93043 81 Locate
ndhB gene − 93579 95790 2212 Locate
rps7 gene − 96065 96532 468 Locate
rps12 gene − 96586 97379 794 Locate
trnV-GAC gene + 98996 99067 72 Locate
rrn16 gene + 99295 100785 1491 Locate
trnI-GAU gene + 101075 102083 1009 Locate
trnA-UGC gene + 102148 103026 879 Locate
rrn23 gene + 103219 106028 2810 Locate
rrn4.5 gene + 106127 106229 103 Locate
rrn5 gene + 106485 106605 121 Locate
trnR-ACG gene + 106840 106912 73 Locate
trnN-GUU gene − 107480 107551 72 Locate
ndhF gene − 108941 111157 2217 Locate
rpl32 gene + 111662 111838 177 Locate
trnL-UAG gene + 112562 112641 80 Locate
ccsA gene + 112726 113697 972 Locate
ndhD gene − 113880 115400 1521 Locate
psaC gene − 115500 115745 246 Locate
ndhE gene − 116008 116313 306 Locate
ndhG gene − 116535 117065 531 Locate
ndhI gene − 117444 117950 507 Locate
ndhA gene − 118037 120195 2159 Locate
ndhH gene − 120197 121378 1182 Locate
rps15 gene − 121490 121822 333 Locate
ycf1 gene − 122140 127692 5553 Locate
trnN-GUU gene + 128018 128089 72 Locate
trnR-ACG gene − 128657 128729 73 Locate
rrn5 gene − 128964 129084 121 Locate
rrn4.5 gene − 129340 129442 103 Locate
rrn23 gene − 129541 132350 2810 Locate
trnA-UGC gene − 132543 133421 879 Locate
trnI-GAU gene − 133486 134494 1009 Locate
rrn16 gene − 134784 136274 1491 Locate
trnV-GAC gene − 136502 136573 72 Locate
rps12 gene + 138190 138983 794 Locate
rps7 gene + 139037 139504 468 Locate
ndhB gene + 139779 141990 2212 Locate
trnL-CAA gene + 142526 142606 81 Locate
ycf15 gene − 142867 143115 249 Locate
ycf2 gene − 143158 150042 6885 Locate
trnI-CAU gene + 150131 150204 74 Locate
rpl23 gene + 150370 150651 282 Locate
rpl2 gene + 150670 152161 1492 Locate
Status Available
Accession OR565960.1
Length 152,254 bp
GC content 38.4%
Annotated genes 132
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 14 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources