Paraphlomis sp YC-2025b chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · PV741117.1 · 2–76 bp · −
psbA · PV741117.1 · 318–1,376 bp · −
trnK-UUU · PV741117.1 · 1,609–4,197 bp · −
matK · PV741117.1 · 1,913–3,448 bp · −
rps16 · PV741117.1 · 5,126–6,266 bp · −
trnQ-UUG · PV741117.1 · 7,209–7,280 bp · −
trnS-GCU · PV741117.1 · 8,418–8,505 bp · −
atpA · PV741117.1 · 10,290–11,813 bp · −
atpF · PV741117.1 · 11,901–13,125 bp · −
atpH · PV741117.1 · 13,490–13,735 bp · −
atpI · PV741117.1 · 14,736–15,479 bp · −
rps2 · PV741117.1 · 15,710–16,420 bp · −
rpoC2 · PV741117.1 · 16,640–20,827 bp · −
rpoC1 · PV741117.1 · 20,982–23,813 bp · −
rpoB · PV741117.1 · 23,840–27,052 bp · −
psbM · PV741117.1 · 29,948–30,052 bp · −
trnD-GUC · PV741117.1 · 30,576–30,649 bp · −
trnY-GUA · PV741117.1 · 30,765–30,848 bp · −
trnE-UUC · PV741117.1 · 30,908–30,977 bp · −
trnE-UUC · PV741117.1 · 30,908–30,980 bp · −
trnS-UGA · PV741117.1 · 35,552–35,644 bp · −
trnfM-CAU · PV741117.1 · 36,606–36,679 bp · −
rps14 · PV741117.1 · 36,829–37,131 bp · −
psaB · PV741117.1 · 37,259–39,463 bp · −
psaA · PV741117.1 · 39,489–41,741 bp · −
ycf3 · PV741117.1 · 42,469–44,424 bp · −
rps4 · PV741117.1 · 45,138–45,743 bp · −
trnT-UGU · PV741117.1 · 46,144–46,216 bp · −
ndhJ · PV741117.1 · 48,495–48,971 bp · −
ndhK · PV741117.1 · 49,072–49,749 bp · −
ndhC · PV741117.1 · 49,803–50,165 bp · −
trnV-UAC · PV741117.1 · 51,125–51,777 bp · −
atpE · PV741117.1 · 52,256–52,657 bp · −
atpB · PV741117.1 · 52,654–54,144 bp · −
psbJ · PV741117.1 · 63,833–63,955 bp · −
psbL · PV741117.1 · 64,093–64,209 bp · −
psbF · PV741117.1 · 64,233–64,352 bp · −
psbE · PV741117.1 · 64,367–64,618 bp · −
trnW-CCA · PV741117.1 · 66,054–66,127 bp · −
trnP-UGG · PV741117.1 · 66,295–66,368 bp · −
rpl20 · PV741117.1 · 68,120–68,506 bp · −
rps12 · PV741117.1 · 69,262–69,375 bp · −
rps12 · PV741117.1 · 96,623–97,416 bp · −
clpP · PV741117.1 · 69,504–71,382 bp · −
psbN · PV741117.1 · 73,702–73,833 bp · −
rpoA · PV741117.1 · 77,238–78,251 bp · −
rps11 · PV741117.1 · 78,323–78,754 bp · −
rpl36 · PV741117.1 · 78,842–78,955 bp · −
infA · PV741117.1 · 79,051–79,284 bp · −
rps8 · PV741117.1 · 79,407–79,820 bp · −
rpl14 · PV741117.1 · 80,012–80,380 bp · −
rpl16 · PV741117.1 · 80,507–81,814 bp · −
rps3 · PV741117.1 · 81,961–82,623 bp · −
rpl22 · PV741117.1 · 82,608–83,072 bp · −
rps19 · PV741117.1 · 83,132–83,410 bp · −
rpl2 · PV741117.1 · 83,463–84,954 bp · −
rpl23 · PV741117.1 · 84,973–85,254 bp · −
trnI-CAU · PV741117.1 · 85,420–85,493 bp · −
trnL-CAA · PV741117.1 · 93,000–93,080 bp · −
ndhB · PV741117.1 · 93,620–95,831 bp · −
rps7 · PV741117.1 · 96,102–96,569 bp · −
trnN-GUU · PV741117.1 · 107,517–107,588 bp · −
ndhF · PV741117.1 · 108,978–111,200 bp · −
ndhD · PV741117.1 · 113,924–115,453 bp · −
psaC · PV741117.1 · 115,544–115,789 bp · −
ndhE · PV741117.1 · 116,052–116,357 bp · −
ndhG · PV741117.1 · 116,579–117,109 bp · −
ndhI · PV741117.1 · 117,479–117,985 bp · −
ndhA · PV741117.1 · 118,072–120,237 bp · −
ndhH · PV741117.1 · 120,239–121,420 bp · −
rps15 · PV741117.1 · 121,527–121,799 bp · −
ycf1 · PV741117.1 · 122,178–127,712 bp · −
trnR-ACG · PV741117.1 · 128,676–128,749 bp · −
rrn5 · PV741117.1 · 128,984–129,104 bp · −
rrn4.5 · PV741117.1 · 129,360–129,462 bp · −
rrn23 · PV741117.1 · 129,561–132,370 bp · −
trnA-UGC · PV741117.1 · 132,563–133,441 bp · −
trnI-GAU · PV741117.1 · 133,506–134,514 bp · −
rrn16 · PV741117.1 · 134,804–136,294 bp · −
trnV-GAC · PV741117.1 · 136,522–136,593 bp · −
ycf15 · PV741117.1 · 142,887–143,150 bp · −
ycf2 · PV741117.1 · 143,178–150,044 bp · −
psbK · PV741117.1 · 7,617–7,802 bp · +
psbI · PV741117.1 · 8,179–8,289 bp · +
trnG-UCC · PV741117.1 · 9,190–9,945 bp · +
trnR-UCU · PV741117.1 · 10,122–10,193 bp · +
trnC-GCA · PV741117.1 · 28,160–28,235 bp · +
petN · PV741117.1 · 29,072–29,161 bp · +
trnT-GGU · PV741117.1 · 31,570–31,640 bp · +
psbD · PV741117.1 · 32,892–33,953 bp · +
psbC · PV741117.1 · 33,901–35,322 bp · +
psbZ · PV741117.1 · 35,970–36,158 bp · +
trnG-GCC · PV741117.1 · 36,388–36,458 bp · +
trnS-GGA · PV741117.1 · 44,754–44,840 bp · +
trnL-UAA · PV741117.1 · 46,889–47,462 bp · +
trnF-GAA · PV741117.1 · 47,754–47,826 bp · +
trnM-CAU · PV741117.1 · 51,966–52,038 bp · +
rbcL · PV741117.1 · 55,304–56,404 bp · +
accD · PV741117.1 · 57,094–58,560 bp · +
psaI · PV741117.1 · 59,247–59,357 bp · +
ycf4 · PV741117.1 · 59,803–60,357 bp · +
cemA · PV741117.1 · 60,924–61,613 bp · +
petA · PV741117.1 · 61,830–62,792 bp · +
petL · PV741117.1 · 65,544–65,639 bp · +
petG · PV741117.1 · 65,814–65,927 bp · +
psaJ · PV741117.1 · 66,643–66,777 bp · +
rpl33 · PV741117.1 · 67,251–67,451 bp · +
rps18 · PV741117.1 · 67,598–67,903 bp · +
rps12 · PV741117.1 · 138,210–139,003 bp · +
psbB · PV741117.1 · 71,820–73,346 bp · +
psbT · PV741117.1 · 73,534–73,641 bp · +
psbH · PV741117.1 · 73,937–74,158 bp · +
petB · PV741117.1 · 74,283–75,659 bp · +
petD · PV741117.1 · 75,854–77,075 bp · +
ycf2 · PV741117.1 · 85,582–92,448 bp · +
ycf15 · PV741117.1 · 92,476–92,739 bp · +
trnV-GAC · PV741117.1 · 99,033–99,104 bp · +
rrn16 · PV741117.1 · 99,332–100,822 bp · +
trnI-GAU · PV741117.1 · 101,112–102,120 bp · +
trnA-UGC · PV741117.1 · 102,185–103,063 bp · +
rrn23 · PV741117.1 · 103,256–106,065 bp · +
rrn4.5 · PV741117.1 · 106,164–106,266 bp · +
rrn5 · PV741117.1 · 106,522–106,642 bp · +
trnR-ACG · PV741117.1 · 106,877–106,950 bp · +
rpl32 · PV741117.1 · 111,707–111,883 bp · +
trnL-UAG · PV741117.1 · 112,606–112,685 bp · +
ccsA · PV741117.1 · 112,770–113,741 bp · +
trnN-GUU · PV741117.1 · 128,038–128,109 bp · +
rps7 · PV741117.1 · 139,057–139,524 bp · +
ndhB · PV741117.1 · 139,795–142,006 bp · +
trnL-CAA · PV741117.1 · 142,546–142,626 bp · +
trnI-CAU · PV741117.1 · 150,133–150,206 bp · +
rpl23 · PV741117.1 · 150,372–150,653 bp · +
rpl2 · PV741117.1 · 150,672–152,163 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Paraphlomis sp YC-2025b
ANNOTATED PLASTOME
PV741117.1
152,257 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38064 76128 114193 152257 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 2 76 75 Locate
psbA gene − 318 1376 1059 Locate
trnK-UUU gene − 1609 4197 2589 Locate
matK gene − 1913 3448 1536 Locate
rps16 gene − 5126 6266 1141 Locate
trnQ-UUG gene − 7209 7280 72 Locate
psbK gene + 7617 7802 186 Locate
psbI gene + 8179 8289 111 Locate
trnS-GCU gene − 8418 8505 88 Locate
trnG-UCC gene + 9190 9945 756 Locate
trnR-UCU gene + 10122 10193 72 Locate
atpA gene − 10290 11813 1524 Locate
atpF gene − 11901 13125 1225 Locate
atpH gene − 13490 13735 246 Locate
atpI gene − 14736 15479 744 Locate
rps2 gene − 15710 16420 711 Locate
rpoC2 gene − 16640 20827 4188 Locate
rpoC1 gene − 20982 23813 2832 Locate
rpoB gene − 23840 27052 3213 Locate
trnC-GCA gene + 28160 28235 76 Locate
petN gene + 29072 29161 90 Locate
psbM gene − 29948 30052 105 Locate
trnD-GUC gene − 30576 30649 74 Locate
trnY-GUA gene − 30765 30848 84 Locate
trnE-UUC tRNA − 30908 30977 70 Locate
trnE-UUC gene − 30908 30980 73 Locate
trnT-GGU gene + 31570 31640 71 Locate
psbD gene + 32892 33953 1062 Locate
psbC gene + 33901 35322 1422 Locate
trnS-UGA gene − 35552 35644 93 Locate
psbZ gene + 35970 36158 189 Locate
trnG-GCC gene + 36388 36458 71 Locate
trnfM-CAU gene − 36606 36679 74 Locate
rps14 gene − 36829 37131 303 Locate
psaB gene − 37259 39463 2205 Locate
psaA gene − 39489 41741 2253 Locate
ycf3 gene − 42469 44424 1956 Locate
trnS-GGA gene + 44754 44840 87 Locate
rps4 gene − 45138 45743 606 Locate
trnT-UGU gene − 46144 46216 73 Locate
trnL-UAA gene + 46889 47462 574 Locate
trnF-GAA gene + 47754 47826 73 Locate
ndhJ gene − 48495 48971 477 Locate
ndhK gene − 49072 49749 678 Locate
ndhC gene − 49803 50165 363 Locate
trnV-UAC gene − 51125 51777 653 Locate
trnM-CAU gene + 51966 52038 73 Locate
atpE gene − 52256 52657 402 Locate
atpB gene − 52654 54144 1491 Locate
rbcL gene + 55304 56404 1101 Locate
accD gene + 57094 58560 1467 Locate
psaI gene + 59247 59357 111 Locate
ycf4 gene + 59803 60357 555 Locate
cemA gene + 60924 61613 690 Locate
petA gene + 61830 62792 963 Locate
psbJ gene − 63833 63955 123 Locate
psbL gene − 64093 64209 117 Locate
psbF gene − 64233 64352 120 Locate
psbE gene − 64367 64618 252 Locate
petL gene + 65544 65639 96 Locate
petG gene + 65814 65927 114 Locate
trnW-CCA gene − 66054 66127 74 Locate
trnP-UGG gene − 66295 66368 74 Locate
psaJ gene + 66643 66777 135 Locate
rpl33 gene + 67251 67451 201 Locate
rps18 gene + 67598 67903 306 Locate
rpl20 gene − 68120 68506 387 Locate
rps12 gene − 69262 69375 114 Locate
clpP gene − 69504 71382 1879 Locate
psbB gene + 71820 73346 1527 Locate
psbT gene + 73534 73641 108 Locate
psbN gene − 73702 73833 132 Locate
psbH gene + 73937 74158 222 Locate
petB gene + 74283 75659 1377 Locate
petD gene + 75854 77075 1222 Locate
rpoA gene − 77238 78251 1014 Locate
rps11 gene − 78323 78754 432 Locate
rpl36 gene − 78842 78955 114 Locate
infA gene − 79051 79284 234 Locate
rps8 gene − 79407 79820 414 Locate
rpl14 gene − 80012 80380 369 Locate
rpl16 gene − 80507 81814 1308 Locate
rps3 gene − 81961 82623 663 Locate
rpl22 gene − 82608 83072 465 Locate
rps19 gene − 83132 83410 279 Locate
rpl2 gene − 83463 84954 1492 Locate
rpl23 gene − 84973 85254 282 Locate
trnI-CAU gene − 85420 85493 74 Locate
ycf2 gene + 85582 92448 6867 Locate
ycf15 gene + 92476 92739 264 Locate
trnL-CAA gene − 93000 93080 81 Locate
ndhB gene − 93620 95831 2212 Locate
rps7 gene − 96102 96569 468 Locate
rps12 gene − 96623 97416 794 Locate
trnV-GAC gene + 99033 99104 72 Locate
rrn16 gene + 99332 100822 1491 Locate
trnI-GAU gene + 101112 102120 1009 Locate
trnA-UGC gene + 102185 103063 879 Locate
rrn23 gene + 103256 106065 2810 Locate
rrn4.5 gene + 106164 106266 103 Locate
rrn5 gene + 106522 106642 121 Locate
trnR-ACG gene + 106877 106950 74 Locate
trnN-GUU gene − 107517 107588 72 Locate
ndhF gene − 108978 111200 2223 Locate
rpl32 gene + 111707 111883 177 Locate
trnL-UAG gene + 112606 112685 80 Locate
ccsA gene + 112770 113741 972 Locate
ndhD gene − 113924 115453 1530 Locate
psaC gene − 115544 115789 246 Locate
ndhE gene − 116052 116357 306 Locate
ndhG gene − 116579 117109 531 Locate
ndhI gene − 117479 117985 507 Locate
ndhA gene − 118072 120237 2166 Locate
ndhH gene − 120239 121420 1182 Locate
rps15 gene − 121527 121799 273 Locate
ycf1 gene − 122178 127712 5535 Locate
trnN-GUU gene + 128038 128109 72 Locate
trnR-ACG gene − 128676 128749 74 Locate
rrn5 gene − 128984 129104 121 Locate
rrn4.5 gene − 129360 129462 103 Locate
rrn23 gene − 129561 132370 2810 Locate
trnA-UGC gene − 132563 133441 879 Locate
trnI-GAU gene − 133506 134514 1009 Locate
rrn16 gene − 134804 136294 1491 Locate
trnV-GAC gene − 136522 136593 72 Locate
rps12 gene + 138210 139003 794 Locate
rps7 gene + 139057 139524 468 Locate
ndhB gene + 139795 142006 2212 Locate
trnL-CAA gene + 142546 142626 81 Locate
ycf15 gene − 142887 143150 264 Locate
ycf2 gene − 143178 150044 6867 Locate
trnI-CAU gene + 150133 150206 74 Locate
rpl23 gene + 150372 150653 282 Locate
rpl2 gene + 150672 152163 1492 Locate
Status Available
Accession PV741117.1
Length 152,257 bp
GC content 38.4%
Annotated genes 133
Gene sequence records 0
Translation Rna 38 Photosystem Ii 15 Other 14 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 0
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources