Paraphlomis strictiflora chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · OR565937.1 · 2–76 bp · −
psbA · OR565937.1 · 308–1,366 bp · −
trnK-UUU · OR565937.1 · 1,599–4,187 bp · −
matK · OR565937.1 · 1,903–3,438 bp · −
rps16 · OR565937.1 · 5,114–6,254 bp · −
trnQ-UUG · OR565937.1 · 7,191–7,262 bp · −
trnS-GCU · OR565937.1 · 8,394–8,481 bp · −
atpA · OR565937.1 · 10,278–11,801 bp · −
atpF · OR565937.1 · 11,889–13,110 bp · −
atpH · OR565937.1 · 13,478–13,723 bp · −
atpI · OR565937.1 · 14,747–15,490 bp · −
rps2 · OR565937.1 · 15,721–16,431 bp · −
rpoC2 · OR565937.1 · 16,652–20,839 bp · −
rpoC1 · OR565937.1 · 20,994–23,825 bp · −
rpoB · OR565937.1 · 23,852–27,064 bp · −
psbM · OR565937.1 · 29,961–30,065 bp · −
trnD-GUC · OR565937.1 · 30,589–30,662 bp · −
trnY-GUA · OR565937.1 · 30,777–30,860 bp · −
trnE-UUC · OR565937.1 · 30,920–30,992 bp · −
trnS-UGA · OR565937.1 · 35,560–35,652 bp · −
trnfM-CAU · OR565937.1 · 36,615–36,688 bp · −
rps14 · OR565937.1 · 36,838–37,140 bp · −
psaB · OR565937.1 · 37,268–39,472 bp · −
psaA · OR565937.1 · 39,498–41,750 bp · −
ycf3 · OR565937.1 · 42,478–44,433 bp · −
rps4 · OR565937.1 · 45,148–45,753 bp · −
trnT-UGU · OR565937.1 · 46,155–46,227 bp · −
ndhJ · OR565937.1 · 48,505–48,981 bp · −
ndhK · OR565937.1 · 49,098–49,775 bp · −
ndhC · OR565937.1 · 49,829–50,191 bp · −
trnV-UAC · OR565937.1 · 51,157–51,803 bp · −
atpE · OR565937.1 · 52,282–52,683 bp · −
atpB · OR565937.1 · 52,680–54,170 bp · −
psbJ · OR565937.1 · 63,842–63,964 bp · −
psbL · OR565937.1 · 64,102–64,218 bp · −
psbF · OR565937.1 · 64,242–64,361 bp · −
psbE · OR565937.1 · 64,376–64,627 bp · −
trnW-CCA · OR565937.1 · 66,068–66,141 bp · −
trnP-UGG · OR565937.1 · 66,311–66,384 bp · −
rpl20 · OR565937.1 · 68,090–68,476 bp · −
rps12 · OR565937.1 · 69,244–69,357 bp · −
rps12 · OR565937.1 · 96,604–97,397 bp · −
clpP · OR565937.1 · 69,484–71,351 bp · −
psbN · OR565937.1 · 73,677–73,808 bp · −
rpoA · OR565937.1 · 77,215–78,228 bp · −
rps11 · OR565937.1 · 78,300–78,731 bp · −
rpl36 · OR565937.1 · 78,819–78,932 bp · −
infA · OR565937.1 · 79,028–79,261 bp · −
rps8 · OR565937.1 · 79,386–79,799 bp · −
rpl14 · OR565937.1 · 79,990–80,358 bp · −
rpl16 · OR565937.1 · 80,485–81,791 bp · −
rps3 · OR565937.1 · 81,938–82,600 bp · −
rpl22 · OR565937.1 · 82,585–83,049 bp · −
rps19 · OR565937.1 · 83,109–83,387 bp · −
rpl2 · OR565937.1 · 83,440–84,931 bp · −
rpl23 · OR565937.1 · 84,950–85,231 bp · −
trnI-CAU · OR565937.1 · 85,397–85,470 bp · −
trnL-CAA · OR565937.1 · 92,977–93,057 bp · −
ndhB · OR565937.1 · 93,597–95,808 bp · −
rps7 · OR565937.1 · 96,083–96,550 bp · −
trnN-GUU · OR565937.1 · 107,498–107,569 bp · −
ndhF · OR565937.1 · 108,959–111,181 bp · −
ndhD · OR565937.1 · 113,896–115,416 bp · −
psaC · OR565937.1 · 115,514–115,759 bp · −
ndhE · OR565937.1 · 116,022–116,327 bp · −
ndhG · OR565937.1 · 116,549–117,079 bp · −
ndhI · OR565937.1 · 117,459–117,956 bp · −
ndhA · OR565937.1 · 118,043–120,201 bp · −
ndhH · OR565937.1 · 120,203–121,384 bp · −
rps15 · OR565937.1 · 121,485–121,820 bp · −
ycf1 · OR565937.1 · 122,138–127,699 bp · −
trnR-ACG · OR565937.1 · 128,664–128,736 bp · −
rrn5 · OR565937.1 · 128,971–129,091 bp · −
rrn4.5 · OR565937.1 · 129,347–129,449 bp · −
rrn23 · OR565937.1 · 129,548–132,357 bp · −
trnA-UGC · OR565937.1 · 132,550–133,428 bp · −
trnI-GAU · OR565937.1 · 133,493–134,501 bp · −
rrn16 · OR565937.1 · 134,791–136,281 bp · −
trnV-GAC · OR565937.1 · 136,509–136,580 bp · −
ycf15 · OR565937.1 · 142,878–143,141 bp · −
ycf2 · OR565937.1 · 143,169–150,035 bp · −
psbK · OR565937.1 · 7,599–7,784 bp · +
psbI · OR565937.1 · 8,160–8,270 bp · +
trnG-UCC · OR565937.1 · 9,174–9,933 bp · +
trnR-UCU · OR565937.1 · 10,110–10,181 bp · +
trnC-GCA · OR565937.1 · 28,167–28,247 bp · +
petN · OR565937.1 · 29,079–29,168 bp · +
trnT-GGU · OR565937.1 · 31,552–31,622 bp · +
psbD · OR565937.1 · 32,899–33,960 bp · +
psbC · OR565937.1 · 33,908–35,329 bp · +
psbZ · OR565937.1 · 35,977–36,165 bp · +
trnG-GCC · OR565937.1 · 36,395–36,465 bp · +
trnS-GGA · OR565937.1 · 44,763–44,849 bp · +
trnL-UAA · OR565937.1 · 46,905–47,478 bp · +
trnF-GAA · OR565937.1 · 47,770–47,842 bp · +
trnM-CAU · OR565937.1 · 51,992–52,064 bp · +
rbcL · OR565937.1 · 54,959–56,425 bp · +
accD · OR565937.1 · 57,115–58,581 bp · +
psaI · OR565937.1 · 59,268–59,378 bp · +
ycf4 · OR565937.1 · 59,814–60,368 bp · +
cemA · OR565937.1 · 60,936–61,625 bp · +
petA · OR565937.1 · 61,842–62,804 bp · +
petL · OR565937.1 · 65,559–65,654 bp · +
petG · OR565937.1 · 65,829–65,942 bp · +
psaJ · OR565937.1 · 66,659–66,793 bp · +
rpl33 · OR565937.1 · 67,259–67,459 bp · +
rps18 · OR565937.1 · 67,606–67,911 bp · +
rps12 · OR565937.1 · 138,197–138,990 bp · +
psbB · OR565937.1 · 71,789–73,315 bp · +
psbT · OR565937.1 · 73,509–73,616 bp · +
psbH · OR565937.1 · 73,912–74,133 bp · +
petB · OR565937.1 · 74,258–75,636 bp · +
petD · OR565937.1 · 75,831–77,052 bp · +
ycf2 · OR565937.1 · 85,559–92,425 bp · +
ycf15 · OR565937.1 · 92,468–92,716 bp · +
trnV-GAC · OR565937.1 · 99,014–99,085 bp · +
rrn16 · OR565937.1 · 99,313–100,803 bp · +
trnI-GAU · OR565937.1 · 101,093–102,101 bp · +
trnA-UGC · OR565937.1 · 102,166–103,044 bp · +
rrn23 · OR565937.1 · 103,237–106,046 bp · +
rrn4.5 · OR565937.1 · 106,145–106,247 bp · +
rrn5 · OR565937.1 · 106,503–106,623 bp · +
trnR-ACG · OR565937.1 · 106,858–106,930 bp · +
rpl32 · OR565937.1 · 111,686–111,862 bp · +
trnL-UAG · OR565937.1 · 112,585–112,664 bp · +
ccsA · OR565937.1 · 112,749–113,720 bp · +
trnN-GUU · OR565937.1 · 128,025–128,096 bp · +
rps7 · OR565937.1 · 139,044–139,511 bp · +
ndhB · OR565937.1 · 139,786–141,997 bp · +
trnL-CAA · OR565937.1 · 142,537–142,617 bp · +
trnI-CAU · OR565937.1 · 150,124–150,197 bp · +
rpl23 · OR565937.1 · 150,363–150,644 bp · +
rpl2 · OR565937.1 · 150,663–152,154 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Paraphlomis strictiflora
ANNOTATED PLASTOME
OR565937.1
152,248 bp · 132 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38062 76124 114186 152248 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
133 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 2 76 75 Locate
psbA gene − 308 1366 1059 Locate
trnK-UUU gene − 1599 4187 2589 Locate
matK gene − 1903 3438 1536 Locate
rps16 gene − 5114 6254 1141 Locate
trnQ-UUG gene − 7191 7262 72 Locate
psbK gene + 7599 7784 186 Locate
psbI gene + 8160 8270 111 Locate
trnS-GCU gene − 8394 8481 88 Locate
trnG-UCC gene + 9174 9933 760 Locate
trnR-UCU gene + 10110 10181 72 Locate
atpA gene − 10278 11801 1524 Locate
atpF gene − 11889 13110 1222 Locate
atpH gene − 13478 13723 246 Locate
atpI gene − 14747 15490 744 Locate
rps2 gene − 15721 16431 711 Locate
rpoC2 gene − 16652 20839 4188 Locate
rpoC1 gene − 20994 23825 2832 Locate
rpoB gene − 23852 27064 3213 Locate
trnC-GCA gene + 28167 28247 81 Locate
petN gene + 29079 29168 90 Locate
psbM gene − 29961 30065 105 Locate
trnD-GUC gene − 30589 30662 74 Locate
trnY-GUA gene − 30777 30860 84 Locate
trnE-UUC gene − 30920 30992 73 Locate
trnT-GGU gene + 31552 31622 71 Locate
psbD gene + 32899 33960 1062 Locate
psbC gene + 33908 35329 1422 Locate
trnS-UGA gene − 35560 35652 93 Locate
psbZ gene + 35977 36165 189 Locate
trnG-GCC gene + 36395 36465 71 Locate
trnfM-CAU gene − 36615 36688 74 Locate
rps14 gene − 36838 37140 303 Locate
psaB gene − 37268 39472 2205 Locate
psaA gene − 39498 41750 2253 Locate
ycf3 gene − 42478 44433 1956 Locate
trnS-GGA gene + 44763 44849 87 Locate
rps4 gene − 45148 45753 606 Locate
trnT-UGU gene − 46155 46227 73 Locate
trnL-UAA gene + 46905 47478 574 Locate
trnF-GAA gene + 47770 47842 73 Locate
ndhJ gene − 48505 48981 477 Locate
ndhK gene − 49098 49775 678 Locate
ndhC gene − 49829 50191 363 Locate
trnV-UAC gene − 51157 51803 647 Locate
trnM-CAU gene + 51992 52064 73 Locate
atpE gene − 52282 52683 402 Locate
atpB gene − 52680 54170 1491 Locate
rbcL gene + 54959 56425 1467 Locate
accD gene + 57115 58581 1467 Locate
psaI gene + 59268 59378 111 Locate
ycf4 gene + 59814 60368 555 Locate
cemA gene + 60936 61625 690 Locate
petA gene + 61842 62804 963 Locate
psbJ gene − 63842 63964 123 Locate
psbL gene − 64102 64218 117 Locate
psbF gene − 64242 64361 120 Locate
psbE gene − 64376 64627 252 Locate
petL gene + 65559 65654 96 Locate
petG gene + 65829 65942 114 Locate
trnW-CCA gene − 66068 66141 74 Locate
trnP-UGG gene − 66311 66384 74 Locate
psaJ gene + 66659 66793 135 Locate
rpl33 gene + 67259 67459 201 Locate
rps18 gene + 67606 67911 306 Locate
rpl20 gene − 68090 68476 387 Locate
rps12 gene − 69244 69357 114 Locate
clpP gene − 69484 71351 1868 Locate
psbB gene + 71789 73315 1527 Locate
psbT gene + 73509 73616 108 Locate
psbN gene − 73677 73808 132 Locate
psbH gene + 73912 74133 222 Locate
petB gene + 74258 75636 1379 Locate
petD gene + 75831 77052 1222 Locate
rpoA gene − 77215 78228 1014 Locate
rps11 gene − 78300 78731 432 Locate
rpl36 gene − 78819 78932 114 Locate
infA gene − 79028 79261 234 Locate
rps8 gene − 79386 79799 414 Locate
rpl14 gene − 79990 80358 369 Locate
rpl16 gene − 80485 81791 1307 Locate
rps3 gene − 81938 82600 663 Locate
rpl22 gene − 82585 83049 465 Locate
rps19 gene − 83109 83387 279 Locate
rpl2 gene − 83440 84931 1492 Locate
rpl23 gene − 84950 85231 282 Locate
trnI-CAU gene − 85397 85470 74 Locate
ycf2 gene + 85559 92425 6867 Locate
ycf15 gene + 92468 92716 249 Locate
trnL-CAA gene − 92977 93057 81 Locate
ndhB gene − 93597 95808 2212 Locate
rps7 gene − 96083 96550 468 Locate
rps12 gene − 96604 97397 794 Locate
trnV-GAC gene + 99014 99085 72 Locate
rrn16 gene + 99313 100803 1491 Locate
trnI-GAU gene + 101093 102101 1009 Locate
trnA-UGC gene + 102166 103044 879 Locate
rrn23 gene + 103237 106046 2810 Locate
rrn4.5 gene + 106145 106247 103 Locate
rrn5 gene + 106503 106623 121 Locate
trnR-ACG gene + 106858 106930 73 Locate
trnN-GUU gene − 107498 107569 72 Locate
ndhF gene − 108959 111181 2223 Locate
rpl32 gene + 111686 111862 177 Locate
trnL-UAG gene + 112585 112664 80 Locate
ccsA gene + 112749 113720 972 Locate
ndhD gene − 113896 115416 1521 Locate
psaC gene − 115514 115759 246 Locate
ndhE gene − 116022 116327 306 Locate
ndhG gene − 116549 117079 531 Locate
ndhI gene − 117459 117956 498 Locate
ndhA gene − 118043 120201 2159 Locate
ndhH gene − 120203 121384 1182 Locate
rps15 gene − 121485 121820 336 Locate
ycf1 gene − 122138 127699 5562 Locate
trnN-GUU gene + 128025 128096 72 Locate
trnR-ACG gene − 128664 128736 73 Locate
rrn5 gene − 128971 129091 121 Locate
rrn4.5 gene − 129347 129449 103 Locate
rrn23 gene − 129548 132357 2810 Locate
trnA-UGC gene − 132550 133428 879 Locate
trnI-GAU gene − 133493 134501 1009 Locate
rrn16 gene − 134791 136281 1491 Locate
trnV-GAC gene − 136509 136580 72 Locate
rps12 gene + 138197 138990 794 Locate
rps7 gene + 139044 139511 468 Locate
ndhB gene + 139786 141997 2212 Locate
trnL-CAA gene + 142537 142617 81 Locate
ycf15 gene − 142878 143141 264 Locate
ycf2 gene − 143169 150035 6867 Locate
trnI-CAU gene + 150124 150197 74 Locate
rpl23 gene + 150363 150644 282 Locate
rpl2 gene + 150663 152154 1492 Locate
Status Available
Accession OR565937.1
Length 152,248 bp
GC content 38.4%
Annotated genes 132
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 14 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources