Paraphlomis yingdeensis chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · OR565948.1 · 2–76 bp · −
psbA · OR565948.1 · 308–1,366 bp · −
trnK-UUU · OR565948.1 · 1,599–4,187 bp · −
matK · OR565948.1 · 1,903–3,438 bp · −
rps16 · OR565948.1 · 5,114–6,254 bp · −
trnQ-UUG · OR565948.1 · 7,202–7,273 bp · −
trnS-GCU · OR565948.1 · 8,405–8,492 bp · −
atpA · OR565948.1 · 10,297–11,820 bp · −
atpF · OR565948.1 · 11,908–13,129 bp · −
atpH · OR565948.1 · 13,498–13,743 bp · −
atpI · OR565948.1 · 14,742–15,485 bp · −
rps2 · OR565948.1 · 15,716–16,426 bp · −
rpoC2 · OR565948.1 · 16,647–20,834 bp · −
rpoC1 · OR565948.1 · 20,989–23,820 bp · −
rpoB · OR565948.1 · 23,847–27,059 bp · −
psbM · OR565948.1 · 29,930–30,034 bp · −
trnD-GUC · OR565948.1 · 30,558–30,631 bp · −
trnY-GUA · OR565948.1 · 30,746–30,829 bp · −
trnE-UUC · OR565948.1 · 30,889–30,961 bp · −
trnS-UGA · OR565948.1 · 35,503–35,595 bp · −
trnfM-CAU · OR565948.1 · 36,558–36,631 bp · −
rps14 · OR565948.1 · 36,781–37,083 bp · −
psaB · OR565948.1 · 37,211–39,415 bp · −
psaA · OR565948.1 · 39,441–41,693 bp · −
ycf3 · OR565948.1 · 42,421–44,384 bp · −
rps4 · OR565948.1 · 45,099–45,704 bp · −
trnT-UGU · OR565948.1 · 46,095–46,167 bp · −
ndhJ · OR565948.1 · 48,447–48,923 bp · −
ndhK · OR565948.1 · 49,024–49,701 bp · −
ndhC · OR565948.1 · 49,755–50,117 bp · −
trnV-UAC · OR565948.1 · 51,083–51,729 bp · −
atpE · OR565948.1 · 52,208–52,609 bp · −
atpB · OR565948.1 · 52,606–54,102 bp · −
psbJ · OR565948.1 · 63,773–63,895 bp · −
psbL · OR565948.1 · 64,033–64,149 bp · −
psbF · OR565948.1 · 64,173–64,292 bp · −
psbE · OR565948.1 · 64,307–64,558 bp · −
trnW-CCA · OR565948.1 · 65,987–66,060 bp · −
trnP-UGG · OR565948.1 · 66,230–66,303 bp · −
rpl20 · OR565948.1 · 68,017–68,403 bp · −
rps12 · OR565948.1 · 69,176–69,289 bp · −
rps12 · OR565948.1 · 96,538–97,331 bp · −
clpP · OR565948.1 · 69,422–71,287 bp · −
psbN · OR565948.1 · 73,611–73,742 bp · −
rpoA · OR565948.1 · 77,149–78,162 bp · −
rps11 · OR565948.1 · 78,234–78,665 bp · −
rpl36 · OR565948.1 · 78,753–78,866 bp · −
infA · OR565948.1 · 78,962–79,195 bp · −
rps8 · OR565948.1 · 79,320–79,733 bp · −
rpl14 · OR565948.1 · 79,924–80,292 bp · −
rpl16 · OR565948.1 · 80,419–81,725 bp · −
rps3 · OR565948.1 · 81,872–82,534 bp · −
rpl22 · OR565948.1 · 82,519–82,983 bp · −
rps19 · OR565948.1 · 83,043–83,321 bp · −
rpl2 · OR565948.1 · 83,374–84,865 bp · −
rpl23 · OR565948.1 · 84,884–85,165 bp · −
trnI-CAU · OR565948.1 · 85,331–85,404 bp · −
trnL-CAA · OR565948.1 · 92,911–92,991 bp · −
ndhB · OR565948.1 · 93,531–95,742 bp · −
rps7 · OR565948.1 · 96,017–96,484 bp · −
trnN-GUU · OR565948.1 · 107,432–107,503 bp · −
ndhF · OR565948.1 · 108,893–111,115 bp · −
ndhD · OR565948.1 · 113,849–115,369 bp · −
psaC · OR565948.1 · 115,467–115,712 bp · −
ndhE · OR565948.1 · 115,975–116,280 bp · −
ndhG · OR565948.1 · 116,502–117,032 bp · −
ndhI · OR565948.1 · 117,411–117,908 bp · −
ndhA · OR565948.1 · 117,995–120,154 bp · −
ndhH · OR565948.1 · 120,156–121,337 bp · −
rps15 · OR565948.1 · 121,438–121,773 bp · −
ycf1 · OR565948.1 · 122,091–127,634 bp · −
trnR-ACG · OR565948.1 · 128,598–128,671 bp · −
rrn5 · OR565948.1 · 128,906–129,026 bp · −
rrn4.5 · OR565948.1 · 129,282–129,384 bp · −
rrn23 · OR565948.1 · 129,483–132,292 bp · −
trnA-UGC · OR565948.1 · 132,485–133,363 bp · −
trnI-GAU · OR565948.1 · 133,428–134,436 bp · −
rrn16 · OR565948.1 · 134,726–136,216 bp · −
trnV-GAC · OR565948.1 · 136,444–136,515 bp · −
ycf15 · OR565948.1 · 142,813–143,076 bp · −
ycf2 · OR565948.1 · 143,104–149,970 bp · −
psbK · OR565948.1 · 7,610–7,795 bp · +
psbI · OR565948.1 · 8,171–8,281 bp · +
trnG-UCC · OR565948.1 · 9,193–9,952 bp · +
trnR-UCU · OR565948.1 · 10,126–10,200 bp · +
trnC-GCA · OR565948.1 · 28,161–28,241 bp · +
petN · OR565948.1 · 29,059–29,154 bp · +
trnT-GGU · OR565948.1 · 31,521–31,591 bp · +
psbD · OR565948.1 · 32,842–33,903 bp · +
psbC · OR565948.1 · 33,851–35,272 bp · +
psbZ · OR565948.1 · 35,920–36,108 bp · +
trnG-GCC · OR565948.1 · 36,338–36,408 bp · +
trnS-GGA · OR565948.1 · 44,714–44,800 bp · +
trnL-UAA · OR565948.1 · 46,847–47,420 bp · +
trnF-GAA · OR565948.1 · 47,712–47,784 bp · +
trnM-CAU · OR565948.1 · 51,918–51,990 bp · +
rbcL · OR565948.1 · 54,897–56,342 bp · +
accD · OR565948.1 · 57,039–58,505 bp · +
psaI · OR565948.1 · 59,192–59,302 bp · +
ycf4 · OR565948.1 · 59,738–60,292 bp · +
cemA · OR565948.1 · 60,860–61,549 bp · +
petA · OR565948.1 · 61,766–62,728 bp · +
petL · OR565948.1 · 65,478–65,573 bp · +
petG · OR565948.1 · 65,748–65,861 bp · +
psaJ · OR565948.1 · 66,578–66,712 bp · +
rpl33 · OR565948.1 · 67,185–67,385 bp · +
rps18 · OR565948.1 · 67,532–67,837 bp · +
rps12 · OR565948.1 · 138,132–138,925 bp · +
psbB · OR565948.1 · 71,725–73,251 bp · +
psbT · OR565948.1 · 73,443–73,550 bp · +
psbH · OR565948.1 · 73,846–74,067 bp · +
petB · OR565948.1 · 74,192–75,570 bp · +
petD · OR565948.1 · 75,765–76,986 bp · +
ycf2 · OR565948.1 · 85,493–92,359 bp · +
ycf15 · OR565948.1 · 92,402–92,650 bp · +
trnV-GAC · OR565948.1 · 98,948–99,019 bp · +
rrn16 · OR565948.1 · 99,247–100,737 bp · +
trnI-GAU · OR565948.1 · 101,027–102,035 bp · +
trnA-UGC · OR565948.1 · 102,100–102,978 bp · +
rrn23 · OR565948.1 · 103,171–105,980 bp · +
rrn4.5 · OR565948.1 · 106,079–106,181 bp · +
rrn5 · OR565948.1 · 106,437–106,557 bp · +
trnR-ACG · OR565948.1 · 106,792–106,865 bp · +
rpl32 · OR565948.1 · 111,620–111,796 bp · +
trnL-UAG · OR565948.1 · 112,520–112,599 bp · +
ccsA · OR565948.1 · 112,695–113,666 bp · +
trnN-GUU · OR565948.1 · 127,960–128,031 bp · +
rps7 · OR565948.1 · 138,979–139,446 bp · +
ndhB · OR565948.1 · 139,721–141,932 bp · +
trnL-CAA · OR565948.1 · 142,472–142,552 bp · +
trnI-CAU · OR565948.1 · 150,059–150,132 bp · +
rpl23 · OR565948.1 · 150,298–150,579 bp · +
rpl2 · OR565948.1 · 150,598–152,089 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Paraphlomis yingdeensis
ANNOTATED PLASTOME
OR565948.1
152,183 bp · 132 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38046 76092 114137 152183 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
133 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 2 76 75 Locate
psbA gene − 308 1366 1059 Locate
trnK-UUU gene − 1599 4187 2589 Locate
matK gene − 1903 3438 1536 Locate
rps16 gene − 5114 6254 1141 Locate
trnQ-UUG gene − 7202 7273 72 Locate
psbK gene + 7610 7795 186 Locate
psbI gene + 8171 8281 111 Locate
trnS-GCU gene − 8405 8492 88 Locate
trnG-UCC gene + 9193 9952 760 Locate
trnR-UCU gene + 10126 10200 75 Locate
atpA gene − 10297 11820 1524 Locate
atpF gene − 11908 13129 1222 Locate
atpH gene − 13498 13743 246 Locate
atpI gene − 14742 15485 744 Locate
rps2 gene − 15716 16426 711 Locate
rpoC2 gene − 16647 20834 4188 Locate
rpoC1 gene − 20989 23820 2832 Locate
rpoB gene − 23847 27059 3213 Locate
trnC-GCA gene + 28161 28241 81 Locate
petN gene + 29059 29154 96 Locate
psbM gene − 29930 30034 105 Locate
trnD-GUC gene − 30558 30631 74 Locate
trnY-GUA gene − 30746 30829 84 Locate
trnE-UUC gene − 30889 30961 73 Locate
trnT-GGU gene + 31521 31591 71 Locate
psbD gene + 32842 33903 1062 Locate
psbC gene + 33851 35272 1422 Locate
trnS-UGA gene − 35503 35595 93 Locate
psbZ gene + 35920 36108 189 Locate
trnG-GCC gene + 36338 36408 71 Locate
trnfM-CAU gene − 36558 36631 74 Locate
rps14 gene − 36781 37083 303 Locate
psaB gene − 37211 39415 2205 Locate
psaA gene − 39441 41693 2253 Locate
ycf3 gene − 42421 44384 1964 Locate
trnS-GGA gene + 44714 44800 87 Locate
rps4 gene − 45099 45704 606 Locate
trnT-UGU gene − 46095 46167 73 Locate
trnL-UAA gene + 46847 47420 574 Locate
trnF-GAA gene + 47712 47784 73 Locate
ndhJ gene − 48447 48923 477 Locate
ndhK gene − 49024 49701 678 Locate
ndhC gene − 49755 50117 363 Locate
trnV-UAC gene − 51083 51729 647 Locate
trnM-CAU gene + 51918 51990 73 Locate
atpE gene − 52208 52609 402 Locate
atpB gene − 52606 54102 1497 Locate
rbcL gene + 54897 56342 1446 Locate
accD gene + 57039 58505 1467 Locate
psaI gene + 59192 59302 111 Locate
ycf4 gene + 59738 60292 555 Locate
cemA gene + 60860 61549 690 Locate
petA gene + 61766 62728 963 Locate
psbJ gene − 63773 63895 123 Locate
psbL gene − 64033 64149 117 Locate
psbF gene − 64173 64292 120 Locate
psbE gene − 64307 64558 252 Locate
petL gene + 65478 65573 96 Locate
petG gene + 65748 65861 114 Locate
trnW-CCA gene − 65987 66060 74 Locate
trnP-UGG gene − 66230 66303 74 Locate
psaJ gene + 66578 66712 135 Locate
rpl33 gene + 67185 67385 201 Locate
rps18 gene + 67532 67837 306 Locate
rpl20 gene − 68017 68403 387 Locate
rps12 gene − 69176 69289 114 Locate
clpP gene − 69422 71287 1866 Locate
psbB gene + 71725 73251 1527 Locate
psbT gene + 73443 73550 108 Locate
psbN gene − 73611 73742 132 Locate
psbH gene + 73846 74067 222 Locate
petB gene + 74192 75570 1379 Locate
petD gene + 75765 76986 1222 Locate
rpoA gene − 77149 78162 1014 Locate
rps11 gene − 78234 78665 432 Locate
rpl36 gene − 78753 78866 114 Locate
infA gene − 78962 79195 234 Locate
rps8 gene − 79320 79733 414 Locate
rpl14 gene − 79924 80292 369 Locate
rpl16 gene − 80419 81725 1307 Locate
rps3 gene − 81872 82534 663 Locate
rpl22 gene − 82519 82983 465 Locate
rps19 gene − 83043 83321 279 Locate
rpl2 gene − 83374 84865 1492 Locate
rpl23 gene − 84884 85165 282 Locate
trnI-CAU gene − 85331 85404 74 Locate
ycf2 gene + 85493 92359 6867 Locate
ycf15 gene + 92402 92650 249 Locate
trnL-CAA gene − 92911 92991 81 Locate
ndhB gene − 93531 95742 2212 Locate
rps7 gene − 96017 96484 468 Locate
rps12 gene − 96538 97331 794 Locate
trnV-GAC gene + 98948 99019 72 Locate
rrn16 gene + 99247 100737 1491 Locate
trnI-GAU gene + 101027 102035 1009 Locate
trnA-UGC gene + 102100 102978 879 Locate
rrn23 gene + 103171 105980 2810 Locate
rrn4.5 gene + 106079 106181 103 Locate
rrn5 gene + 106437 106557 121 Locate
trnR-ACG gene + 106792 106865 74 Locate
trnN-GUU gene − 107432 107503 72 Locate
ndhF gene − 108893 111115 2223 Locate
rpl32 gene + 111620 111796 177 Locate
trnL-UAG gene + 112520 112599 80 Locate
ccsA gene + 112695 113666 972 Locate
ndhD gene − 113849 115369 1521 Locate
psaC gene − 115467 115712 246 Locate
ndhE gene − 115975 116280 306 Locate
ndhG gene − 116502 117032 531 Locate
ndhI gene − 117411 117908 498 Locate
ndhA gene − 117995 120154 2160 Locate
ndhH gene − 120156 121337 1182 Locate
rps15 gene − 121438 121773 336 Locate
ycf1 gene − 122091 127634 5544 Locate
trnN-GUU gene + 127960 128031 72 Locate
trnR-ACG gene − 128598 128671 74 Locate
rrn5 gene − 128906 129026 121 Locate
rrn4.5 gene − 129282 129384 103 Locate
rrn23 gene − 129483 132292 2810 Locate
trnA-UGC gene − 132485 133363 879 Locate
trnI-GAU gene − 133428 134436 1009 Locate
rrn16 gene − 134726 136216 1491 Locate
trnV-GAC gene − 136444 136515 72 Locate
rps12 gene + 138132 138925 794 Locate
rps7 gene + 138979 139446 468 Locate
ndhB gene + 139721 141932 2212 Locate
trnL-CAA gene + 142472 142552 81 Locate
ycf15 gene − 142813 143076 264 Locate
ycf2 gene − 143104 149970 6867 Locate
trnI-CAU gene + 150059 150132 74 Locate
rpl23 gene + 150298 150579 282 Locate
rpl2 gene + 150598 152089 1492 Locate
Status Available
Accession OR565948.1
Length 152,183 bp
GC content 38.4%
Annotated genes 132
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 14 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources