Phlomoides alpina chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
trnR-UCU · MN814865.1 · 1,621–1,692 bp · −
trnG-UCC · MN814865.1 · 1,869–2,628 bp · −
psbI · MN814865.1 · 3,398–3,508 bp · −
psbK · MN814865.1 · 3,883–4,068 bp · −
rpl2 · MN814865.1 · 11,822–13,313 bp · −
rpl23 · MN814865.1 · 13,332–13,613 bp · −
trnI-CAU · MN814865.1 · 13,779–13,852 bp · −
trnL-CAA · MN814865.1 · 21,332–21,412 bp · −
ndhB · MN814865.1 · 21,957–24,168 bp · −
rps7 · MN814865.1 · 24,443–24,910 bp · −
rps12 · MN814865.1 · 24,964–25,757 bp · −
rrn16 · MN814865.1 · 27,672–29,161 bp · −
trnN-GUU · MN814865.1 · 35,862–35,933 bp · −
ccsA · MN814865.1 · 50,196–51,167 bp · −
trnL-UAG · MN814865.1 · 51,252–51,331 bp · −
rpl32 · MN814865.1 · 51,861–52,037 bp · −
ycf1 · MN814865.1 · 54,713–55,831 bp · −
trnR-ACG · MN814865.1 · 56,800–56,873 bp · −
rrn5 · MN814865.1 · 57,108–57,228 bp · −
rrn4.5 · MN814865.1 · 57,484–57,586 bp · −
rrn23 · MN814865.1 · 57,688–60,495 bp · −
trnA-UGC · MN814865.1 · 60,687–61,565 bp · −
trnI-GAU · MN814865.1 · 61,630–62,638 bp · −
rrn16 · MN814865.1 · 62,929–64,418 bp · −
trnV-GAC · MN814865.1 · 64,646–64,717 bp · −
ycf2 · MN814865.1 · 71,310–78,149 bp · −
petD · MN814865.1 · 86,645–87,858 bp · −
petB · MN814865.1 · 88,053–89,434 bp · −
psbH · MN814865.1 · 89,559–89,780 bp · −
psbT · MN814865.1 · 90,089–90,190 bp · −
psbB · MN814865.1 · 90,384–91,910 bp · −
rps18 · MN814865.1 · 95,821–96,126 bp · −
rpl33 · MN814865.1 · 96,276–96,476 bp · −
psaJ · MN814865.1 · 96,948–97,082 bp · −
petG · MN814865.1 · 97,791–97,904 bp · −
petL · MN814865.1 · 98,079–98,174 bp · −
petA · MN814865.1 · 100,929–101,891 bp · −
cemA · MN814865.1 · 102,108–102,797 bp · −
ycf4 · MN814865.1 · 103,358–103,912 bp · −
psaI · MN814865.1 · 104,347–104,457 bp · −
accD · MN814865.1 · 105,137–106,603 bp · −
rbcL · MN814865.1 · 107,293–108,738 bp · −
trnM-CAU · MN814865.1 · 111,662–111,734 bp · −
trnP-GAA · MN814865.1 · 115,878–115,950 bp · −
trnL-UAA · MN814865.1 · 116,242–116,814 bp · −
trnS-GGA · MN814865.1 · 118,834–118,920 bp · −
trnG-GCC · MN814865.1 · 127,187–127,257 bp · −
psbZ · MN814865.1 · 127,488–127,676 bp · −
psbC · MN814865.1 · 128,329–129,750 bp · −
psbD · MN814865.1 · 129,698–130,759 bp · −
trnT-GGU · MN814865.1 · 132,007–132,078 bp · −
petN · MN814865.1 · 134,503–134,592 bp · −
trnC-GCA · MN814865.1 · 135,430–135,500 bp · −
atpA · MN814865.1 · 1–1,524 bp · +
trnS-GCU · MN814865.1 · 3,188–3,275 bp · +
trnQ-UUG · MN814865.1 · 4,405–4,476 bp · +
rps16 · MN814865.1 · 5,467–6,606 bp · +
trnK-UUU · MN814865.1 · 7,541–10,130 bp · +
matK · MN814865.1 · 8,290–9,825 bp · +
psbA · MN814865.1 · 10,363–11,421 bp · +
trnH-GUG · MN814865.1 · 11,653–11,726 bp · +
ycf2 · MN814865.1 · 13,941–20,780 bp · +
rps12 · MN814865.1 · 94,343–94,456 bp · +
trnV-GAC · MN814865.1 · 27,373–27,444 bp · +
trnI-GAU · MN814865.1 · 29,452–30,460 bp · +
trnA-UGC · MN814865.1 · 30,525–31,403 bp · +
rrn23 · MN814865.1 · 31,595–34,402 bp · +
rrn4.5 · MN814865.1 · 34,504–34,606 bp · +
rrn5 · MN814865.1 · 34,862–34,982 bp · +
trnR-ACG · MN814865.1 · 35,217–35,290 bp · +
ycf1 · MN814865.1 · 36,259–41,751 bp · +
rps15 · MN814865.1 · 42,134–42,406 bp · +
ndhH · MN814865.1 · 42,507–43,688 bp · +
ndhI · MN814865.1 · 45,941–46,426 bp · +
ndhG · MN814865.1 · 46,829–47,359 bp · +
ndhE · MN814865.1 · 47,575–47,880 bp · +
psaC · MN814865.1 · 48,143–48,388 bp · +
ndhD · MN814865.1 · 48,513–50,015 bp · +
ndhF · MN814865.1 · 52,545–54,767 bp · +
trnN-GUU · MN814865.1 · 56,157–56,228 bp · +
rps12 · MN814865.1 · 66,333–67,126 bp · +
rps7 · MN814865.1 · 67,180–67,647 bp · +
ndhB · MN814865.1 · 67,922–70,133 bp · +
trnL-CAA · MN814865.1 · 70,678–70,758 bp · +
trnI-CAU · MN814865.1 · 78,238–78,311 bp · +
rpl23 · MN814865.1 · 78,477–78,758 bp · +
rpl2 · MN814865.1 · 78,777–80,268 bp · +
rps19 · MN814865.1 · 80,321–80,599 bp · +
rpl22 · MN814865.1 · 80,659–81,123 bp · +
rps3 · MN814865.1 · 81,108–81,770 bp · +
rpl16 · MN814865.1 · 81,926–83,230 bp · +
rpl14 · MN814865.1 · 83,357–83,725 bp · +
rps8 · MN814865.1 · 83,898–84,311 bp · +
infA · MN814865.1 · 84,434–84,667 bp · +
rpl36 · MN814865.1 · 84,763–84,876 bp · +
rps11 · MN814865.1 · 84,981–85,397 bp · +
rpoA · MN814865.1 · 85,469–86,482 bp · +
psbN · MN814865.1 · 89,884–90,015 bp · +
rpl20 · MN814865.1 · 95,217–95,603 bp · +
trnP-UGG · MN814865.1 · 97,356–97,429 bp · +
trnW-CCA · MN814865.1 · 97,593–97,666 bp · +
psbE · MN814865.1 · 99,108–99,359 bp · +
psbF · MN814865.1 · 99,374–99,493 bp · +
psbL · MN814865.1 · 99,517–99,633 bp · +
psbJ · MN814865.1 · 99,771–99,893 bp · +
atpB · MN814865.1 · 109,545–111,041 bp · +
atpE · MN814865.1 · 111,038–111,439 bp · +
trnV-UAC · MN814865.1 · 111,923–112,576 bp · +
ndhC · MN814865.1 · 113,529–113,891 bp · +
ndhK · MN814865.1 · 113,945–114,622 bp · +
ndhJ · MN814865.1 · 114,723–115,199 bp · +
trnT-UGU · MN814865.1 · 117,478–117,550 bp · +
rps4 · MN814865.1 · 117,943–118,548 bp · +
ycf3 · MN814865.1 · 119,237–121,171 bp · +
psaA · MN814865.1 · 121,901–124,153 bp · +
psaB · MN814865.1 · 124,179–126,383 bp · +
rps14 · MN814865.1 · 126,511–126,813 bp · +
trnM-CAU · MN814865.1 · 126,963–127,036 bp · +
trnS-UGA · MN814865.1 · 128,005–128,097 bp · +
trnE-UUC · MN814865.1 · 132,667–132,739 bp · +
trnY-GUA · MN814865.1 · 132,799–132,882 bp · +
trnD-GUC · MN814865.1 · 132,996–133,069 bp · +
psbM · MN814865.1 · 133,607–133,711 bp · +
rpoB · MN814865.1 · 136,607–139,819 bp · +
rpoC1 · MN814865.1 · 139,846–142,683 bp · +
rpoc2 · MN814865.1 · 142,850–147,028 bp · +
rps2 · MN814865.1 · 147,248–147,958 bp · +
atpI · MN814865.1 · 148,189–148,932 bp · +
atpH · MN814865.1 · 149,928–150,173 bp · +
atpF · MN814865.1 · 150,545–151,755 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Phlomoides alpina
ANNOTATED PLASTOME
MN814865.1
151,844 bp · 129 genes
Gene function
ATP synthase
Transfer RNA
Photosystem II
Ribosomal protein
Other
NADH dehydrogenase
Ribosomal RNA
Photosystem I
RNA polymerase
Cytochrome
0 37961 75922 113883 151844 bp
Forward strand 5′ → 3′
atpA trnS-GCU trnQ-UUG rps16 trnK-UUU matK psbA trnH-GUG ycf2 trnV-GAC trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG ycf1 rps15 ndhH ndhI ndhG ndhE psaC ndhD ndhF trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2 rps19 rpl22 rps3 rpl16 rpl14 rps8 infA rpl36 rps11 rpoA psbN rps12 rpl20 trnP-UGG trnW-CCA psbE psbF psbL psbJ atpB atpE trnV-UAC ndhC ndhK ndhJ trnT-UGU rps4 ycf3 psaA psaB rps14 trnM-CAU trnS-UGA trnE-UUC trnY-GUA trnD-GUC psbM rpoB rpoC1 rpoc2 rps2 atpI atpH atpF
trnR-UCU trnG-UCC psbI psbK rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 rrn16 trnN-GUU ccsA trnL-UAG rpl32 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf2 petD petB psbH psbT psbB rps18 rpl33 psaJ petG petL petA cemA ycf4 psaI accD rbcL trnM-CAU trnP-GAA trnL-UAA trnS-GGA trnG-GCC psbZ psbC psbD trnT-GGU petN trnC-GCA
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
130 local segments
Gene Type Group Strand Start End Length
atpA gene + 1 1524 1524 Locate
trnR-UCU gene − 1621 1692 72 Locate
trnG-UCC gene − 1869 2628 760 Locate
trnS-GCU gene + 3188 3275 88 Locate
psbI gene − 3398 3508 111 Locate
psbK gene − 3883 4068 186 Locate
trnQ-UUG gene + 4405 4476 72 Locate
rps16 gene + 5467 6606 1140 Locate
trnK-UUU gene + 7541 10130 2590 Locate
matK gene + 8290 9825 1536 Locate
psbA gene + 10363 11421 1059 Locate
trnH-GUG gene + 11653 11726 74 Locate
rpl2 gene − 11822 13313 1492 Locate
rpl23 gene − 13332 13613 282 Locate
trnI-CAU gene − 13779 13852 74 Locate
ycf2 gene + 13941 20780 6840 Locate
trnL-CAA gene − 21332 21412 81 Locate
ndhB gene − 21957 24168 2212 Locate
rps7 gene − 24443 24910 468 Locate
rps12 gene − 24964 25757 794 Locate
trnV-GAC gene + 27373 27444 72 Locate
rrn16 gene − 27672 29161 1490 Locate
trnI-GAU gene + 29452 30460 1009 Locate
trnA-UGC gene + 30525 31403 879 Locate
rrn23 gene + 31595 34402 2808 Locate
rrn4.5 gene + 34504 34606 103 Locate
rrn5 gene + 34862 34982 121 Locate
trnR-ACG gene + 35217 35290 74 Locate
trnN-GUU gene − 35862 35933 72 Locate
ycf1 gene + 36259 41751 5493 Locate
rps15 gene + 42134 42406 273 Locate
ndhH gene + 42507 43688 1182 Locate
ndhI gene + 45941 46426 486 Locate
ndhG gene + 46829 47359 531 Locate
ndhE gene + 47575 47880 306 Locate
psaC gene + 48143 48388 246 Locate
ndhD gene + 48513 50015 1503 Locate
ccsA gene − 50196 51167 972 Locate
trnL-UAG gene − 51252 51331 80 Locate
rpl32 gene − 51861 52037 177 Locate
ndhF gene + 52545 54767 2223 Locate
ycf1 gene − 54713 55831 1119 Locate
trnN-GUU gene + 56157 56228 72 Locate
trnR-ACG gene − 56800 56873 74 Locate
rrn5 gene − 57108 57228 121 Locate
rrn4.5 gene − 57484 57586 103 Locate
rrn23 gene − 57688 60495 2808 Locate
trnA-UGC gene − 60687 61565 879 Locate
trnI-GAU gene − 61630 62638 1009 Locate
rrn16 gene − 62929 64418 1490 Locate
trnV-GAC gene − 64646 64717 72 Locate
rps12 gene + 66333 67126 794 Locate
rps7 gene + 67180 67647 468 Locate
ndhB gene + 67922 70133 2212 Locate
trnL-CAA gene + 70678 70758 81 Locate
ycf2 gene − 71310 78149 6840 Locate
trnI-CAU gene + 78238 78311 74 Locate
rpl23 gene + 78477 78758 282 Locate
rpl2 gene + 78777 80268 1492 Locate
rps19 gene + 80321 80599 279 Locate
rpl22 gene + 80659 81123 465 Locate
rps3 gene + 81108 81770 663 Locate
rpl16 gene + 81926 83230 1305 Locate
rpl14 gene + 83357 83725 369 Locate
rps8 gene + 83898 84311 414 Locate
infA gene + 84434 84667 234 Locate
rpl36 gene + 84763 84876 114 Locate
rps11 gene + 84981 85397 417 Locate
rpoA gene + 85469 86482 1014 Locate
petD gene − 86645 87858 1214 Locate
petB gene − 88053 89434 1382 Locate
psbH gene − 89559 89780 222 Locate
psbN gene + 89884 90015 132 Locate
psbT gene − 90089 90190 102 Locate
psbB gene − 90384 91910 1527 Locate
rps12 gene + 94343 94456 114 Locate
rpl20 gene + 95217 95603 387 Locate
rps18 gene − 95821 96126 306 Locate
rpl33 gene − 96276 96476 201 Locate
psaJ gene − 96948 97082 135 Locate
trnP-UGG gene + 97356 97429 74 Locate
trnW-CCA gene + 97593 97666 74 Locate
petG gene − 97791 97904 114 Locate
petL gene − 98079 98174 96 Locate
psbE gene + 99108 99359 252 Locate
psbF gene + 99374 99493 120 Locate
psbL gene + 99517 99633 117 Locate
psbJ gene + 99771 99893 123 Locate
petA gene − 100929 101891 963 Locate
cemA gene − 102108 102797 690 Locate
ycf4 gene − 103358 103912 555 Locate
psaI gene − 104347 104457 111 Locate
accD gene − 105137 106603 1467 Locate
rbcL gene − 107293 108738 1446 Locate
atpB gene + 109545 111041 1497 Locate
atpE gene + 111038 111439 402 Locate
trnM-CAU gene − 111662 111734 73 Locate
trnV-UAC gene + 111923 112576 654 Locate
ndhC gene + 113529 113891 363 Locate
ndhK gene + 113945 114622 678 Locate
ndhJ gene + 114723 115199 477 Locate
trnP-GAA gene − 115878 115950 73 Locate
trnL-UAA gene − 116242 116814 573 Locate
trnT-UGU gene + 117478 117550 73 Locate
rps4 gene + 117943 118548 606 Locate
trnS-GGA gene − 118834 118920 87 Locate
ycf3 gene + 119237 121171 1935 Locate
psaA gene + 121901 124153 2253 Locate
psaB gene + 124179 126383 2205 Locate
rps14 gene + 126511 126813 303 Locate
trnM-CAU gene + 126963 127036 74 Locate
trnG-GCC gene − 127187 127257 71 Locate
psbZ gene − 127488 127676 189 Locate
trnS-UGA gene + 128005 128097 93 Locate
psbC gene − 128329 129750 1422 Locate
psbD gene − 129698 130759 1062 Locate
trnT-GGU gene − 132007 132078 72 Locate
trnE-UUC gene + 132667 132739 73 Locate
trnY-GUA gene + 132799 132882 84 Locate
trnD-GUC gene + 132996 133069 74 Locate
psbM gene + 133607 133711 105 Locate
petN gene − 134503 134592 90 Locate
trnC-GCA gene − 135430 135500 71 Locate
rpoB gene + 136607 139819 3213 Locate
rpoC1 gene + 139846 142683 2838 Locate
rpoc2 gene + 142850 147028 4179 Locate
rps2 gene + 147248 147958 711 Locate
atpI gene + 148189 148932 744 Locate
atpH gene + 149928 150173 246 Locate
atpF gene + 150545 151755 1211 Locate
Status Available
Accession MN814865.1
Length 151,844 bp
GC content 38.5%
Annotated genes 129
Gene sequence records 8
Atp Synthase 6 Translation Rna 37 Photosystem Ii 15 Ribosomal Protein 26 Other 12 Nad Dehydrogenase 11 Ribosomal Rna 8 Photosystem I 5 Rna Polymerase 4 Cytochrome 6
SSR 0
Direct 0
Inverted 0
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources