Phlomoides megalantha chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · NC_085356.1 · 2–75 bp · −
psbA · NC_085356.1 · 306–1,364 bp · −
trnK-UUU · NC_085356.1 · 1,597–4,185 bp · −
matK · NC_085356.1 · 1,901–3,436 bp · −
rps16 · NC_085356.1 · 5,126–6,265 bp · −
trnQ-UUG · NC_085356.1 · 7,259–7,330 bp · −
trnS-GCU · NC_085356.1 · 8,454–8,541 bp · −
atpA · NC_085356.1 · 10,199–11,722 bp · −
atpF · NC_085356.1 · 11,811–13,021 bp · −
atpH · NC_085356.1 · 13,388–13,633 bp · −
atpI · NC_085356.1 · 14,624–15,367 bp · −
rps2 · NC_085356.1 · 15,598–16,497 bp · −
rpoC2 · NC_085356.1 · 16,528–20,718 bp · −
rpoC1 · NC_085356.1 · 20,873–23,710 bp · −
rpoB · NC_085356.1 · 23,737–26,949 bp · −
psbM · NC_085356.1 · 29,844–29,948 bp · −
trnD-GUC · NC_085356.1 · 30,487–30,560 bp · −
trnY-GUA · NC_085356.1 · 30,673–30,756 bp · −
trnE-UUC · NC_085356.1 · 30,816–30,888 bp · −
trnS-UGA · NC_085356.1 · 35,440–35,532 bp · −
trnfM-CAU · NC_085356.1 · 36,498–36,571 bp · −
rps14 · NC_085356.1 · 36,721–37,023 bp · −
psaB · NC_085356.1 · 37,151–39,355 bp · −
psaA · NC_085356.1 · 39,381–41,633 bp · −
ycf3 · NC_085356.1 · 42,370–44,304 bp · −
rps4 · NC_085356.1 · 44,994–45,599 bp · −
trnT-UGU · NC_085356.1 · 45,992–46,064 bp · −
ndhJ · NC_085356.1 · 48,280–48,756 bp · −
ndhK · NC_085356.1 · 48,857–49,618 bp · −
ndhC · NC_085356.1 · 49,588–49,950 bp · −
trnV-UAC · NC_085356.1 · 50,903–51,555 bp · −
atpE · NC_085356.1 · 52,039–52,440 bp · −
atpB · NC_085356.1 · 52,437–53,933 bp · −
psbJ · NC_085356.1 · 63,372–63,494 bp · −
psbL · NC_085356.1 · 63,632–63,748 bp · −
psbF · NC_085356.1 · 63,772–63,891 bp · −
psbE · NC_085356.1 · 63,906–64,157 bp · −
trnW-CCA · NC_085356.1 · 65,596–65,669 bp · −
trnP-UGG · NC_085356.1 · 65,833–65,906 bp · −
rpl20 · NC_085356.1 · 67,660–68,046 bp · −
rps12 · NC_085356.1 · 68,821–68,934 bp · −
rps12 · NC_085356.1 · 96,177–96,970 bp · −
clpP · NC_085356.1 · 69,061–70,928 bp · −
psbN · NC_085356.1 · 73,265–73,396 bp · −
rpoA · NC_085356.1 · 76,803–77,816 bp · −
rps11 · NC_085356.1 · 77,888–78,319 bp · −
rpl36 · NC_085356.1 · 78,407–78,520 bp · −
infA · NC_085356.1 · 78,616–78,849 bp · −
rps8 · NC_085356.1 · 78,972–79,385 bp · −
rpl14 · NC_085356.1 · 79,558–79,926 bp · −
rpl16 · NC_085356.1 · 80,054–81,359 bp · −
rps3 · NC_085356.1 · 81,515–82,177 bp · −
rpl22 · NC_085356.1 · 82,162–82,626 bp · −
rps19 · NC_085356.1 · 82,686–82,958 bp · −
rpl2 · NC_085356.1 · 83,017–84,508 bp · −
rpl23 · NC_085356.1 · 84,527–84,808 bp · −
trnI-CAU · NC_085356.1 · 84,974–85,047 bp · −
trnL-CAA · NC_085356.1 · 92,545–92,625 bp · −
ndhB · NC_085356.1 · 93,170–95,327 bp · −
rps7 · NC_085356.1 · 95,656–96,123 bp · −
trnN-GUU · NC_085356.1 · 107,076–107,147 bp · −
ndhF · NC_085356.1 · 108,537–110,759 bp · −
ndhD · NC_085356.1 · 113,281–114,783 bp · −
psaC · NC_085356.1 · 114,899–115,144 bp · −
ndhE · NC_085356.1 · 115,407–115,709 bp · −
ndhG · NC_085356.1 · 115,928–116,458 bp · −
ndhI · NC_085356.1 · 116,832–117,338 bp · −
ndhA · NC_085356.1 · 117,426–119,592 bp · −
ndhH · NC_085356.1 · 119,594–120,805 bp · −
rps15 · NC_085356.1 · 120,877–121,212 bp · −
ycf1 · NC_085356.1 · 121,525–126,969 bp · −
trnR-ACG · NC_085356.1 · 127,939–128,012 bp · −
rrn5 · NC_085356.1 · 128,247–128,367 bp · −
rrn4.5 · NC_085356.1 · 128,623–128,725 bp · −
rrn23 · NC_085356.1 · 128,826–131,634 bp · −
trnA-UGC · NC_085356.1 · 131,826–132,704 bp · −
trnI-GAU · NC_085356.1 · 132,769–133,777 bp · −
rrn16 · NC_085356.1 · 134,067–135,557 bp · −
trnV-GAC · NC_085356.1 · 135,785–135,856 bp · −
ycf2 · NC_085356.1 · 142,449–149,306 bp · −
psbK · NC_085356.1 · 7,667–7,846 bp · +
psbI · NC_085356.1 · 8,217–8,327 bp · +
trnG-UCC · NC_085356.1 · 9,100–9,858 bp · +
trnR-UCU · NC_085356.1 · 10,031–10,102 bp · +
trnC-GCA · NC_085356.1 · 28,056–28,126 bp · +
petN · NC_085356.1 · 28,963–29,052 bp · +
trnT-GGU · NC_085356.1 · 31,459–31,530 bp · +
psbD · NC_085356.1 · 32,778–33,839 bp · +
psbC · NC_085356.1 · 33,787–35,208 bp · +
psbZ · NC_085356.1 · 35,859–36,047 bp · +
trnG-GCC · NC_085356.1 · 36,277–36,347 bp · +
trnS-GGA · NC_085356.1 · 44,621–44,707 bp · +
trnL-UAA · NC_085356.1 · 46,672–47,237 bp · +
trnF-GAA · NC_085356.1 · 47,529–47,601 bp · +
trnM-CAU · NC_085356.1 · 51,744–51,816 bp · +
rbcL · NC_085356.1 · 54,719–56,185 bp · +
accD · NC_085356.1 · 56,861–58,327 bp · +
psaI · NC_085356.1 · 59,010–59,120 bp · +
ycf4 · NC_085356.1 · 59,553–60,107 bp · +
cemA · NC_085356.1 · 60,452–61,141 bp · +
petA · NC_085356.1 · 61,358–62,320 bp · +
petL · NC_085356.1 · 65,087–65,182 bp · +
petG · NC_085356.1 · 65,357–65,470 bp · +
psaJ · NC_085356.1 · 66,181–66,315 bp · +
rpl33 · NC_085356.1 · 66,788–66,988 bp · +
rps18 · NC_085356.1 · 67,137–67,442 bp · +
rps12 · NC_085356.1 · 137,472–138,265 bp · +
psbB · NC_085356.1 · 71,365–72,891 bp · +
psbT · NC_085356.1 · 73,090–73,191 bp · +
psbH · NC_085356.1 · 73,500–73,721 bp · +
petB · NC_085356.1 · 73,846–75,232 bp · +
petD · NC_085356.1 · 75,427–76,640 bp · +
ycf2 · NC_085356.1 · 85,136–91,993 bp · +
trnV-GAC · NC_085356.1 · 98,586–98,657 bp · +
rrn16 · NC_085356.1 · 98,885–100,375 bp · +
trnI-GAU · NC_085356.1 · 100,665–101,673 bp · +
trnA-UGC · NC_085356.1 · 101,738–102,616 bp · +
rrn23 · NC_085356.1 · 102,808–105,616 bp · +
rrn4.5 · NC_085356.1 · 105,717–105,819 bp · +
rrn5 · NC_085356.1 · 106,075–106,195 bp · +
trnR-ACG · NC_085356.1 · 106,430–106,503 bp · +
rpl32 · NC_085356.1 · 111,266–111,442 bp · +
trnL-UAG · NC_085356.1 · 111,965–112,044 bp · +
ccsA · NC_085356.1 · 112,129–113,100 bp · +
trnN-GUU · NC_085356.1 · 127,295–127,366 bp · +
rps7 · NC_085356.1 · 138,319–138,786 bp · +
ndhB · NC_085356.1 · 139,115–141,272 bp · +
trnL-CAA · NC_085356.1 · 141,817–141,897 bp · +
trnI-CAU · NC_085356.1 · 149,395–149,468 bp · +
rpl23 · NC_085356.1 · 149,634–149,915 bp · +
rpl2 · NC_085356.1 · 149,934–151,425 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Phlomoides megalantha
ANNOTATED PLASTOME
NC_085356.1
151,519 bp · 130 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37880 75760 113639 151519 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
131 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 2 75 74 Locate
psbA gene − 306 1364 1059 Locate
trnK-UUU gene − 1597 4185 2589 Locate
matK gene − 1901 3436 1536 Locate
rps16 gene − 5126 6265 1140 Locate
trnQ-UUG gene − 7259 7330 72 Locate
psbK gene + 7667 7846 180 Locate
psbI gene + 8217 8327 111 Locate
trnS-GCU gene − 8454 8541 88 Locate
trnG-UCC gene + 9100 9858 759 Locate
trnR-UCU gene + 10031 10102 72 Locate
atpA gene − 10199 11722 1524 Locate
atpF gene − 11811 13021 1211 Locate
atpH gene − 13388 13633 246 Locate
atpI gene − 14624 15367 744 Locate
rps2 gene − 15598 16497 900 Locate
rpoC2 gene − 16528 20718 4191 Locate
rpoC1 gene − 20873 23710 2838 Locate
rpoB gene − 23737 26949 3213 Locate
trnC-GCA gene + 28056 28126 71 Locate
petN gene + 28963 29052 90 Locate
psbM gene − 29844 29948 105 Locate
trnD-GUC gene − 30487 30560 74 Locate
trnY-GUA gene − 30673 30756 84 Locate
trnE-UUC gene − 30816 30888 73 Locate
trnT-GGU gene + 31459 31530 72 Locate
psbD gene + 32778 33839 1062 Locate
psbC gene + 33787 35208 1422 Locate
trnS-UGA gene − 35440 35532 93 Locate
psbZ gene + 35859 36047 189 Locate
trnG-GCC gene + 36277 36347 71 Locate
trnfM-CAU gene − 36498 36571 74 Locate
rps14 gene − 36721 37023 303 Locate
psaB gene − 37151 39355 2205 Locate
psaA gene − 39381 41633 2253 Locate
ycf3 gene − 42370 44304 1935 Locate
trnS-GGA gene + 44621 44707 87 Locate
rps4 gene − 44994 45599 606 Locate
trnT-UGU gene − 45992 46064 73 Locate
trnL-UAA gene + 46672 47237 566 Locate
trnF-GAA gene + 47529 47601 73 Locate
ndhJ gene − 48280 48756 477 Locate
ndhK gene − 48857 49618 762 Locate
ndhC gene − 49588 49950 363 Locate
trnV-UAC gene − 50903 51555 653 Locate
trnM-CAU gene + 51744 51816 73 Locate
atpE gene − 52039 52440 402 Locate
atpB gene − 52437 53933 1497 Locate
rbcL gene + 54719 56185 1467 Locate
accD gene + 56861 58327 1467 Locate
psaI gene + 59010 59120 111 Locate
ycf4 gene + 59553 60107 555 Locate
cemA gene + 60452 61141 690 Locate
petA gene + 61358 62320 963 Locate
psbJ gene − 63372 63494 123 Locate
psbL gene − 63632 63748 117 Locate
psbF gene − 63772 63891 120 Locate
psbE gene − 63906 64157 252 Locate
petL gene + 65087 65182 96 Locate
petG gene + 65357 65470 114 Locate
trnW-CCA gene − 65596 65669 74 Locate
trnP-UGG gene − 65833 65906 74 Locate
psaJ gene + 66181 66315 135 Locate
rpl33 gene + 66788 66988 201 Locate
rps18 gene + 67137 67442 306 Locate
rpl20 gene − 67660 68046 387 Locate
rps12 gene − 68821 68934 114 Locate
clpP gene − 69061 70928 1868 Locate
psbB gene + 71365 72891 1527 Locate
psbT gene + 73090 73191 102 Locate
psbN gene − 73265 73396 132 Locate
psbH gene + 73500 73721 222 Locate
petB gene + 73846 75232 1387 Locate
petD gene + 75427 76640 1214 Locate
rpoA gene − 76803 77816 1014 Locate
rps11 gene − 77888 78319 432 Locate
rpl36 gene − 78407 78520 114 Locate
infA gene − 78616 78849 234 Locate
rps8 gene − 78972 79385 414 Locate
rpl14 gene − 79558 79926 369 Locate
rpl16 gene − 80054 81359 1306 Locate
rps3 gene − 81515 82177 663 Locate
rpl22 gene − 82162 82626 465 Locate
rps19 gene − 82686 82958 273 Locate
rpl2 gene − 83017 84508 1492 Locate
rpl23 gene − 84527 84808 282 Locate
trnI-CAU gene − 84974 85047 74 Locate
ycf2 gene + 85136 91993 6858 Locate
trnL-CAA gene − 92545 92625 81 Locate
ndhB gene − 93170 95327 2158 Locate
rps7 gene − 95656 96123 468 Locate
rps12 gene − 96177 96970 794 Locate
trnV-GAC gene + 98586 98657 72 Locate
rrn16 gene + 98885 100375 1491 Locate
trnI-GAU gene + 100665 101673 1009 Locate
trnA-UGC gene + 101738 102616 879 Locate
rrn23 gene + 102808 105616 2809 Locate
rrn4.5 gene + 105717 105819 103 Locate
rrn5 gene + 106075 106195 121 Locate
trnR-ACG gene + 106430 106503 74 Locate
trnN-GUU gene − 107076 107147 72 Locate
ndhF gene − 108537 110759 2223 Locate
rpl32 gene + 111266 111442 177 Locate
trnL-UAG gene + 111965 112044 80 Locate
ccsA gene + 112129 113100 972 Locate
ndhD gene − 113281 114783 1503 Locate
psaC gene − 114899 115144 246 Locate
ndhE gene − 115407 115709 303 Locate
ndhG gene − 115928 116458 531 Locate
ndhI gene − 116832 117338 507 Locate
ndhA gene − 117426 119592 2167 Locate
ndhH gene − 119594 120805 1212 Locate
rps15 gene − 120877 121212 336 Locate
ycf1 gene − 121525 126969 5445 Locate
trnN-GUU gene + 127295 127366 72 Locate
trnR-ACG gene − 127939 128012 74 Locate
rrn5 gene − 128247 128367 121 Locate
rrn4.5 gene − 128623 128725 103 Locate
rrn23 gene − 128826 131634 2809 Locate
trnA-UGC gene − 131826 132704 879 Locate
trnI-GAU gene − 132769 133777 1009 Locate
rrn16 gene − 134067 135557 1491 Locate
trnV-GAC gene − 135785 135856 72 Locate
rps12 gene + 137472 138265 794 Locate
rps7 gene + 138319 138786 468 Locate
ndhB gene + 139115 141272 2158 Locate
trnL-CAA gene + 141817 141897 81 Locate
ycf2 gene − 142449 149306 6858 Locate
trnI-CAU gene + 149395 149468 74 Locate
rpl23 gene + 149634 149915 282 Locate
rpl2 gene + 149934 151425 1492 Locate
Status Available
Accession NC_085356.1
Length 151,519 bp
GC content 38.5%
Annotated genes 130
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 12 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources