Phlomoides ornata chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · NC_085357.1 · 7–80 bp · −
psbA · NC_085357.1 · 312–1,370 bp · −
trnK-UUU · NC_085357.1 · 1,603–4,193 bp · −
matK · NC_085357.1 · 1,908–3,443 bp · −
rps16 · NC_085357.1 · 5,134–6,273 bp · −
trnQ-UUG · NC_085357.1 · 7,267–7,338 bp · −
trnS-GCU · NC_085357.1 · 8,464–8,551 bp · −
atpA · NC_085357.1 · 10,213–11,736 bp · −
atpF · NC_085357.1 · 11,825–13,037 bp · −
atpH · NC_085357.1 · 13,410–13,655 bp · −
atpI · NC_085357.1 · 14,645–15,388 bp · −
rps2 · NC_085357.1 · 15,619–16,518 bp · −
rpoC2 · NC_085357.1 · 16,549–20,739 bp · −
rpoC1 · NC_085357.1 · 20,894–23,732 bp · −
rpoB · NC_085357.1 · 23,759–26,971 bp · −
psbM · NC_085357.1 · 29,875–29,979 bp · −
trnD-GUC · NC_085357.1 · 30,518–30,591 bp · −
trnY-GUA · NC_085357.1 · 30,704–30,787 bp · −
trnE-UUC · NC_085357.1 · 30,847–30,919 bp · −
trnS-UGA · NC_085357.1 · 35,501–35,593 bp · −
trnfM-CAU · NC_085357.1 · 36,560–36,633 bp · −
rps14 · NC_085357.1 · 36,783–37,085 bp · −
psaB · NC_085357.1 · 37,213–39,417 bp · −
psaA · NC_085357.1 · 39,443–41,695 bp · −
ycf3 · NC_085357.1 · 42,424–44,363 bp · −
rps4 · NC_085357.1 · 45,052–45,657 bp · −
trnT-UGU · NC_085357.1 · 46,050–46,122 bp · −
ndhJ · NC_085357.1 · 48,399–48,875 bp · −
ndhK · NC_085357.1 · 48,976–49,737 bp · −
ndhC · NC_085357.1 · 49,707–50,069 bp · −
trnV-UAC · NC_085357.1 · 51,024–51,676 bp · −
atpE · NC_085357.1 · 52,160–52,561 bp · −
atpB · NC_085357.1 · 52,558–54,054 bp · −
psbJ · NC_085357.1 · 63,720–63,842 bp · −
psbL · NC_085357.1 · 63,980–64,096 bp · −
psbF · NC_085357.1 · 64,120–64,239 bp · −
psbE · NC_085357.1 · 64,254–64,505 bp · −
trnW-CCA · NC_085357.1 · 65,945–66,018 bp · −
trnP-UGG · NC_085357.1 · 66,182–66,255 bp · −
rpl20 · NC_085357.1 · 68,008–68,394 bp · −
rps12 · NC_085357.1 · 69,154–69,267 bp · −
rps12 · NC_085357.1 · 96,495–97,288 bp · −
clpP · NC_085357.1 · 69,395–71,263 bp · −
psbN · NC_085357.1 · 73,599–73,730 bp · −
rpoA · NC_085357.1 · 77,131–78,144 bp · −
rps11 · NC_085357.1 · 78,216–78,647 bp · −
rpl36 · NC_085357.1 · 78,735–78,848 bp · −
infA · NC_085357.1 · 78,944–79,177 bp · −
rps8 · NC_085357.1 · 79,301–79,714 bp · −
rpl14 · NC_085357.1 · 79,887–80,255 bp · −
rpl16 · NC_085357.1 · 80,382–81,686 bp · −
rps3 · NC_085357.1 · 81,833–82,495 bp · −
rpl22 · NC_085357.1 · 82,480–82,944 bp · −
rps19 · NC_085357.1 · 83,004–83,276 bp · −
rpl2 · NC_085357.1 · 83,335–84,826 bp · −
rpl23 · NC_085357.1 · 84,845–85,126 bp · −
trnI-CAU · NC_085357.1 · 85,292–85,365 bp · −
trnL-CAA · NC_085357.1 · 92,863–92,943 bp · −
ndhB · NC_085357.1 · 93,488–95,645 bp · −
rps7 · NC_085357.1 · 95,974–96,441 bp · −
trnN-GUU · NC_085357.1 · 107,395–107,466 bp · −
ndhF · NC_085357.1 · 108,856–111,078 bp · −
ndhD · NC_085357.1 · 113,607–115,109 bp · −
psaC · NC_085357.1 · 115,230–115,475 bp · −
ndhE · NC_085357.1 · 115,738–116,040 bp · −
ndhG · NC_085357.1 · 116,259–116,789 bp · −
ndhI · NC_085357.1 · 117,173–117,679 bp · −
ndhA · NC_085357.1 · 117,766–119,932 bp · −
ndhH · NC_085357.1 · 119,934–121,115 bp · −
rps15 · NC_085357.1 · 121,217–121,552 bp · −
ycf1 · NC_085357.1 · 121,871–127,354 bp · −
trnR-ACG · NC_085357.1 · 128,325–128,398 bp · −
rrn5 · NC_085357.1 · 128,633–128,753 bp · −
rrn4.5 · NC_085357.1 · 129,009–129,111 bp · −
rrn23 · NC_085357.1 · 129,212–132,020 bp · −
trnI-GAU · NC_085357.1 · 133,155–134,163 bp · −
rrn16 · NC_085357.1 · 134,453–135,943 bp · −
trnV-GAC · NC_085357.1 · 136,171–136,242 bp · −
ycf2 · NC_085357.1 · 142,835–149,692 bp · −
psbK · NC_085357.1 · 7,675–7,860 bp · +
psbI · NC_085357.1 · 8,228–8,338 bp · +
trnG-UCC · NC_085357.1 · 9,110–9,868 bp · +
trnR-UCU · NC_085357.1 · 10,045–10,116 bp · +
trnC-GCA · NC_085357.1 · 28,092–28,162 bp · +
petN · NC_085357.1 · 28,994–29,083 bp · +
trnT-GGU · NC_085357.1 · 31,515–31,586 bp · +
psbD · NC_085357.1 · 32,839–33,900 bp · +
psbC · NC_085357.1 · 33,848–35,269 bp · +
psbZ · NC_085357.1 · 35,921–36,109 bp · +
trnG-GCC · NC_085357.1 · 36,339–36,409 bp · +
trnS-GGA · NC_085357.1 · 44,681–44,767 bp · +
trnL-UAA · NC_085357.1 · 46,791–47,356 bp · +
trnF-GAA · NC_085357.1 · 47,648–47,720 bp · +
trnM-CAU · NC_085357.1 · 51,865–51,937 bp · +
rbcL · NC_085357.1 · 54,843–56,309 bp · +
accD · NC_085357.1 · 56,985–58,451 bp · +
psaI · NC_085357.1 · 59,136–59,246 bp · +
ycf4 · NC_085357.1 · 59,679–60,233 bp · +
cemA · NC_085357.1 · 60,794–61,483 bp · +
petA · NC_085357.1 · 61,700–62,662 bp · +
petL · NC_085357.1 · 65,436–65,531 bp · +
petG · NC_085357.1 · 65,706–65,819 bp · +
psaJ · NC_085357.1 · 66,529–66,663 bp · +
rpl33 · NC_085357.1 · 67,134–67,334 bp · +
rps18 · NC_085357.1 · 67,483–67,788 bp · +
rps12 · NC_085357.1 · 137,858–138,651 bp · +
psbB · NC_085357.1 · 71,701–73,227 bp · +
psbT · NC_085357.1 · 73,424–73,525 bp · +
psbH · NC_085357.1 · 73,834–74,055 bp · +
petB · NC_085357.1 · 74,180–75,560 bp · +
petD · NC_085357.1 · 75,755–76,968 bp · +
ycf2 · NC_085357.1 · 85,454–92,311 bp · +
trnV-GAC · NC_085357.1 · 98,904–98,975 bp · +
rrn16 · NC_085357.1 · 99,203–100,693 bp · +
trnI-GAU · NC_085357.1 · 100,983–101,991 bp · +
trnA-UGC · NC_085357.1 · 102,056–102,934 bp · +
rrn23 · NC_085357.1 · 103,126–105,934 bp · +
rrn4.5 · NC_085357.1 · 106,035–106,137 bp · +
rrn5 · NC_085357.1 · 106,393–106,513 bp · +
trnR-ACG · NC_085357.1 · 106,748–106,821 bp · +
rpl32 · NC_085357.1 · 111,584–111,760 bp · +
trnL-UAG · NC_085357.1 · 112,291–112,370 bp · +
ccsA · NC_085357.1 · 112,455–113,426 bp · +
trnN-GUU · NC_085357.1 · 127,680–127,751 bp · +
rps7 · NC_085357.1 · 138,705–139,172 bp · +
ndhB · NC_085357.1 · 139,501–141,658 bp · +
trnL-CAA · NC_085357.1 · 142,203–142,283 bp · +
trnI-CAU · NC_085357.1 · 149,781–149,854 bp · +
rpl23 · NC_085357.1 · 150,020–150,301 bp · +
rpl2 · NC_085357.1 · 150,320–151,811 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Phlomoides ornata
ANNOTATED PLASTOME
NC_085357.1
151,905 bp · 129 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37976 75952 113929 151905 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnI-GAU rrn16 trnV-GAC ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
130 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 7 80 74 Locate
psbA gene − 312 1370 1059 Locate
trnK-UUU gene − 1603 4193 2591 Locate
matK gene − 1908 3443 1536 Locate
rps16 gene − 5134 6273 1140 Locate
trnQ-UUG gene − 7267 7338 72 Locate
psbK gene + 7675 7860 186 Locate
psbI gene + 8228 8338 111 Locate
trnS-GCU gene − 8464 8551 88 Locate
trnG-UCC gene + 9110 9868 759 Locate
trnR-UCU gene + 10045 10116 72 Locate
atpA gene − 10213 11736 1524 Locate
atpF gene − 11825 13037 1213 Locate
atpH gene − 13410 13655 246 Locate
atpI gene − 14645 15388 744 Locate
rps2 gene − 15619 16518 900 Locate
rpoC2 gene − 16549 20739 4191 Locate
rpoC1 gene − 20894 23732 2839 Locate
rpoB gene − 23759 26971 3213 Locate
trnC-GCA gene + 28092 28162 71 Locate
petN gene + 28994 29083 90 Locate
psbM gene − 29875 29979 105 Locate
trnD-GUC gene − 30518 30591 74 Locate
trnY-GUA gene − 30704 30787 84 Locate
trnE-UUC gene − 30847 30919 73 Locate
trnT-GGU gene + 31515 31586 72 Locate
psbD gene + 32839 33900 1062 Locate
psbC gene + 33848 35269 1422 Locate
trnS-UGA gene − 35501 35593 93 Locate
psbZ gene + 35921 36109 189 Locate
trnG-GCC gene + 36339 36409 71 Locate
trnfM-CAU gene − 36560 36633 74 Locate
rps14 gene − 36783 37085 303 Locate
psaB gene − 37213 39417 2205 Locate
psaA gene − 39443 41695 2253 Locate
ycf3 gene − 42424 44363 1940 Locate
trnS-GGA gene + 44681 44767 87 Locate
rps4 gene − 45052 45657 606 Locate
trnT-UGU gene − 46050 46122 73 Locate
trnL-UAA gene + 46791 47356 566 Locate
trnF-GAA gene + 47648 47720 73 Locate
ndhJ gene − 48399 48875 477 Locate
ndhK gene − 48976 49737 762 Locate
ndhC gene − 49707 50069 363 Locate
trnV-UAC gene − 51024 51676 653 Locate
trnM-CAU gene + 51865 51937 73 Locate
atpE gene − 52160 52561 402 Locate
atpB gene − 52558 54054 1497 Locate
rbcL gene + 54843 56309 1467 Locate
accD gene + 56985 58451 1467 Locate
psaI gene + 59136 59246 111 Locate
ycf4 gene + 59679 60233 555 Locate
cemA gene + 60794 61483 690 Locate
petA gene + 61700 62662 963 Locate
psbJ gene − 63720 63842 123 Locate
psbL gene − 63980 64096 117 Locate
psbF gene − 64120 64239 120 Locate
psbE gene − 64254 64505 252 Locate
petL gene + 65436 65531 96 Locate
petG gene + 65706 65819 114 Locate
trnW-CCA gene − 65945 66018 74 Locate
trnP-UGG gene − 66182 66255 74 Locate
psaJ gene + 66529 66663 135 Locate
rpl33 gene + 67134 67334 201 Locate
rps18 gene + 67483 67788 306 Locate
rpl20 gene − 68008 68394 387 Locate
rps12 gene − 69154 69267 114 Locate
clpP gene − 69395 71263 1869 Locate
psbB gene + 71701 73227 1527 Locate
psbT gene + 73424 73525 102 Locate
psbN gene − 73599 73730 132 Locate
psbH gene + 73834 74055 222 Locate
petB gene + 74180 75560 1381 Locate
petD gene + 75755 76968 1214 Locate
rpoA gene − 77131 78144 1014 Locate
rps11 gene − 78216 78647 432 Locate
rpl36 gene − 78735 78848 114 Locate
infA gene − 78944 79177 234 Locate
rps8 gene − 79301 79714 414 Locate
rpl14 gene − 79887 80255 369 Locate
rpl16 gene − 80382 81686 1305 Locate
rps3 gene − 81833 82495 663 Locate
rpl22 gene − 82480 82944 465 Locate
rps19 gene − 83004 83276 273 Locate
rpl2 gene − 83335 84826 1492 Locate
rpl23 gene − 84845 85126 282 Locate
trnI-CAU gene − 85292 85365 74 Locate
ycf2 gene + 85454 92311 6858 Locate
trnL-CAA gene − 92863 92943 81 Locate
ndhB gene − 93488 95645 2158 Locate
rps7 gene − 95974 96441 468 Locate
rps12 gene − 96495 97288 794 Locate
trnV-GAC gene + 98904 98975 72 Locate
rrn16 gene + 99203 100693 1491 Locate
trnI-GAU gene + 100983 101991 1009 Locate
trnA-UGC gene + 102056 102934 879 Locate
rrn23 gene + 103126 105934 2809 Locate
rrn4.5 gene + 106035 106137 103 Locate
rrn5 gene + 106393 106513 121 Locate
trnR-ACG gene + 106748 106821 74 Locate
trnN-GUU gene − 107395 107466 72 Locate
ndhF gene − 108856 111078 2223 Locate
rpl32 gene + 111584 111760 177 Locate
trnL-UAG gene + 112291 112370 80 Locate
ccsA gene + 112455 113426 972 Locate
ndhD gene − 113607 115109 1503 Locate
psaC gene − 115230 115475 246 Locate
ndhE gene − 115738 116040 303 Locate
ndhG gene − 116259 116789 531 Locate
ndhI gene − 117173 117679 507 Locate
ndhA gene − 117766 119932 2167 Locate
ndhH gene − 119934 121115 1182 Locate
rps15 gene − 121217 121552 336 Locate
ycf1 gene − 121871 127354 5484 Locate
trnN-GUU gene + 127680 127751 72 Locate
trnR-ACG gene − 128325 128398 74 Locate
rrn5 gene − 128633 128753 121 Locate
rrn4.5 gene − 129009 129111 103 Locate
rrn23 gene − 129212 132020 2809 Locate
trnI-GAU gene − 133155 134163 1009 Locate
rrn16 gene − 134453 135943 1491 Locate
trnV-GAC gene − 136171 136242 72 Locate
rps12 gene + 137858 138651 794 Locate
rps7 gene + 138705 139172 468 Locate
ndhB gene + 139501 141658 2158 Locate
trnL-CAA gene + 142203 142283 81 Locate
ycf2 gene − 142835 149692 6858 Locate
trnI-CAU gene + 149781 149854 74 Locate
rpl23 gene + 150020 150301 282 Locate
rpl2 gene + 150320 151811 1492 Locate
Status Available
Accession NC_085357.1
Length 151,905 bp
GC content 38.5%
Annotated genes 129
Gene sequence records 8
Translation Rna 36 Photosystem Ii 15 Other 12 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources