Phlomoides szechuanensis chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · NC_085358.1 · 7–80 bp · −
psbA · NC_085358.1 · 335–1,393 bp · −
trnK-UUU · NC_085358.1 · 1,626–4,216 bp · −
matK · NC_085358.1 · 1,931–3,466 bp · −
rps16 · NC_085358.1 · 5,154–6,293 bp · −
trnQ-UUG · NC_085358.1 · 7,287–7,358 bp · −
trnS-GCU · NC_085358.1 · 8,499–8,586 bp · −
atpA · NC_085358.1 · 10,237–11,760 bp · −
atpF · NC_085358.1 · 11,849–13,059 bp · −
atpH · NC_085358.1 · 13,429–13,674 bp · −
atpI · NC_085358.1 · 14,668–15,411 bp · −
rps2 · NC_085358.1 · 15,642–16,352 bp · −
rpoC2 · NC_085358.1 · 16,574–20,764 bp · −
rpoC1 · NC_085358.1 · 20,915–23,752 bp · −
rpoB · NC_085358.1 · 23,779–26,991 bp · −
psbM · NC_085358.1 · 29,883–29,987 bp · −
trnD-GUC · NC_085358.1 · 30,529–30,602 bp · −
trnY-GUA · NC_085358.1 · 30,715–30,798 bp · −
trnE-UUC · NC_085358.1 · 30,858–30,930 bp · −
trnS-UGA · NC_085358.1 · 35,505–35,597 bp · −
trnfM-CAU · NC_085358.1 · 36,568–36,641 bp · −
rps14 · NC_085358.1 · 36,791–37,093 bp · −
psaB · NC_085358.1 · 37,221–39,425 bp · −
psaA · NC_085358.1 · 39,451–41,703 bp · −
ycf3 · NC_085358.1 · 42,438–44,377 bp · −
rps4 · NC_085358.1 · 45,069–45,674 bp · −
trnT-UGU · NC_085358.1 · 46,069–46,141 bp · −
ndhJ · NC_085358.1 · 48,419–48,895 bp · −
ndhK · NC_085358.1 · 48,996–49,757 bp · −
ndhC · NC_085358.1 · 49,727–50,089 bp · −
trnV-UAC · NC_085358.1 · 51,043–51,695 bp · −
atpE · NC_085358.1 · 52,179–52,580 bp · −
atpB · NC_085358.1 · 52,577–54,073 bp · −
psbJ · NC_085358.1 · 63,764–63,886 bp · −
psbL · NC_085358.1 · 64,024–64,140 bp · −
psbF · NC_085358.1 · 64,164–64,283 bp · −
psbE · NC_085358.1 · 64,298–64,549 bp · −
trnW-CCA · NC_085358.1 · 65,988–66,061 bp · −
trnP-UGG · NC_085358.1 · 66,225–66,298 bp · −
rpl20 · NC_085358.1 · 68,055–68,441 bp · −
rps12 · NC_085358.1 · 69,200–69,313 bp · −
rps12 · NC_085358.1 · 96,537–97,330 bp · −
clpP · NC_085358.1 · 69,441–71,310 bp · −
psbN · NC_085358.1 · 73,643–73,774 bp · −
rpoA · NC_085358.1 · 77,170–78,183 bp · −
rps11 · NC_085358.1 · 78,255–78,686 bp · −
rpl36 · NC_085358.1 · 78,774–78,887 bp · −
infA · NC_085358.1 · 78,983–79,216 bp · −
rps8 · NC_085358.1 · 79,334–79,747 bp · −
rpl14 · NC_085358.1 · 79,920–80,288 bp · −
rpl16 · NC_085358.1 · 80,415–81,719 bp · −
rps3 · NC_085358.1 · 81,875–82,537 bp · −
rpl22 · NC_085358.1 · 82,522–82,986 bp · −
rps19 · NC_085358.1 · 83,046–83,318 bp · −
rpl2 · NC_085358.1 · 83,377–84,868 bp · −
rpl23 · NC_085358.1 · 84,887–85,168 bp · −
trnI-CAU · NC_085358.1 · 85,334–85,407 bp · −
trnL-CAA · NC_085358.1 · 92,905–92,985 bp · −
ndhB · NC_085358.1 · 93,530–95,687 bp · −
rps7 · NC_085358.1 · 96,016–96,483 bp · −
trnN-GUU · NC_085358.1 · 107,436–107,507 bp · −
ndhF · NC_085358.1 · 108,897–111,119 bp · −
ndhD · NC_085358.1 · 113,651–115,153 bp · −
psaC · NC_085358.1 · 115,271–115,516 bp · −
ndhE · NC_085358.1 · 115,779–116,081 bp · −
ndhG · NC_085358.1 · 116,300–116,830 bp · −
ndhI · NC_085358.1 · 117,209–117,715 bp · −
ndhA · NC_085358.1 · 117,802–119,968 bp · −
ndhH · NC_085358.1 · 119,970–121,151 bp · −
rps15 · NC_085358.1 · 121,253–121,588 bp · −
ycf1 · NC_085358.1 · 121,920–127,403 bp · −
trnR-ACG · NC_085358.1 · 128,373–128,446 bp · −
rrn5 · NC_085358.1 · 128,681–128,801 bp · −
rrn4.5 · NC_085358.1 · 129,057–129,159 bp · −
rrn23 · NC_085358.1 · 129,260–132,068 bp · −
trnA-UGC · NC_085358.1 · 132,260–133,138 bp · −
trnI-GAU · NC_085358.1 · 133,203–134,211 bp · −
rrn16 · NC_085358.1 · 134,501–135,991 bp · −
trnV-GAC · NC_085358.1 · 136,219–136,290 bp · −
ycf2 · NC_085358.1 · 142,883–149,740 bp · −
psbK · NC_085358.1 · 7,695–7,880 bp · +
psbI · NC_085358.1 · 8,249–8,359 bp · +
trnG-UCC · NC_085358.1 · 9,145–9,903 bp · +
trnR-UCU · NC_085358.1 · 10,069–10,140 bp · +
trnC-GCA · NC_085358.1 · 28,099–28,169 bp · +
petN · NC_085358.1 · 29,002–29,091 bp · +
trnT-GGU · NC_085358.1 · 31,524–31,595 bp · +
psbD · NC_085358.1 · 32,844–33,905 bp · +
psbC · NC_085358.1 · 33,853–35,274 bp · +
psbZ · NC_085358.1 · 35,929–36,117 bp · +
trnG-GCC · NC_085358.1 · 36,347–36,417 bp · +
trnS-GGA · NC_085358.1 · 44,695–44,781 bp · +
trnL-UAA · NC_085358.1 · 46,811–47,376 bp · +
trnF-GAA · NC_085358.1 · 47,668–47,740 bp · +
trnM-CAU · NC_085358.1 · 51,884–51,956 bp · +
rbcL · NC_085358.1 · 54,861–56,327 bp · +
accD · NC_085358.1 · 57,002–58,468 bp · +
psaI · NC_085358.1 · 59,153–59,263 bp · +
ycf4 · NC_085358.1 · 59,696–60,250 bp · +
cemA · NC_085358.1 · 60,811–61,500 bp · +
petA · NC_085358.1 · 61,717–62,679 bp · +
petL · NC_085358.1 · 65,479–65,574 bp · +
petG · NC_085358.1 · 65,749–65,862 bp · +
psaJ · NC_085358.1 · 66,573–66,707 bp · +
rpl33 · NC_085358.1 · 67,180–67,380 bp · +
rps18 · NC_085358.1 · 67,530–67,835 bp · +
rps12 · NC_085358.1 · 137,906–138,699 bp · +
psbB · NC_085358.1 · 71,748–73,274 bp · +
psbT · NC_085358.1 · 73,468–73,569 bp · +
psbH · NC_085358.1 · 73,878–74,099 bp · +
petB · NC_085358.1 · 74,224–75,603 bp · +
petD · NC_085358.1 · 75,798–77,007 bp · +
ycf2 · NC_085358.1 · 85,496–92,353 bp · +
trnV-GAC · NC_085358.1 · 98,946–99,017 bp · +
rrn16 · NC_085358.1 · 99,245–100,735 bp · +
trnI-GAU · NC_085358.1 · 101,025–102,033 bp · +
trnA-UGC · NC_085358.1 · 102,098–102,976 bp · +
rrn23 · NC_085358.1 · 103,168–105,976 bp · +
rrn4.5 · NC_085358.1 · 106,077–106,179 bp · +
rrn5 · NC_085358.1 · 106,435–106,555 bp · +
trnR-ACG · NC_085358.1 · 106,790–106,863 bp · +
rpl32 · NC_085358.1 · 111,626–111,802 bp · +
trnL-UAG · NC_085358.1 · 112,335–112,414 bp · +
ccsA · NC_085358.1 · 112,499–113,470 bp · +
trnN-GUU · NC_085358.1 · 127,729–127,800 bp · +
rps7 · NC_085358.1 · 138,753–139,220 bp · +
ndhB · NC_085358.1 · 139,549–141,706 bp · +
trnL-CAA · NC_085358.1 · 142,251–142,331 bp · +
trnI-CAU · NC_085358.1 · 149,829–149,902 bp · +
rpl23 · NC_085358.1 · 150,068–150,349 bp · +
rpl2 · NC_085358.1 · 150,368–151,859 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Phlomoides szechuanensis
ANNOTATED PLASTOME
NC_085358.1
151,953 bp · 130 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37988 75976 113965 151953 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
131 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 7 80 74 Locate
psbA gene − 335 1393 1059 Locate
trnK-UUU gene − 1626 4216 2591 Locate
matK gene − 1931 3466 1536 Locate
rps16 gene − 5154 6293 1140 Locate
trnQ-UUG gene − 7287 7358 72 Locate
psbK gene + 7695 7880 186 Locate
psbI gene + 8249 8359 111 Locate
trnS-GCU gene − 8499 8586 88 Locate
trnG-UCC gene + 9145 9903 759 Locate
trnR-UCU gene + 10069 10140 72 Locate
atpA gene − 10237 11760 1524 Locate
atpF gene − 11849 13059 1211 Locate
atpH gene − 13429 13674 246 Locate
atpI gene − 14668 15411 744 Locate
rps2 gene − 15642 16352 711 Locate
rpoC2 gene − 16574 20764 4191 Locate
rpoC1 gene − 20915 23752 2838 Locate
rpoB gene − 23779 26991 3213 Locate
trnC-GCA gene + 28099 28169 71 Locate
petN gene + 29002 29091 90 Locate
psbM gene − 29883 29987 105 Locate
trnD-GUC gene − 30529 30602 74 Locate
trnY-GUA gene − 30715 30798 84 Locate
trnE-UUC gene − 30858 30930 73 Locate
trnT-GGU gene + 31524 31595 72 Locate
psbD gene + 32844 33905 1062 Locate
psbC gene + 33853 35274 1422 Locate
trnS-UGA gene − 35505 35597 93 Locate
psbZ gene + 35929 36117 189 Locate
trnG-GCC gene + 36347 36417 71 Locate
trnfM-CAU gene − 36568 36641 74 Locate
rps14 gene − 36791 37093 303 Locate
psaB gene − 37221 39425 2205 Locate
psaA gene − 39451 41703 2253 Locate
ycf3 gene − 42438 44377 1940 Locate
trnS-GGA gene + 44695 44781 87 Locate
rps4 gene − 45069 45674 606 Locate
trnT-UGU gene − 46069 46141 73 Locate
trnL-UAA gene + 46811 47376 566 Locate
trnF-GAA gene + 47668 47740 73 Locate
ndhJ gene − 48419 48895 477 Locate
ndhK gene − 48996 49757 762 Locate
ndhC gene − 49727 50089 363 Locate
trnV-UAC gene − 51043 51695 653 Locate
trnM-CAU gene + 51884 51956 73 Locate
atpE gene − 52179 52580 402 Locate
atpB gene − 52577 54073 1497 Locate
rbcL gene + 54861 56327 1467 Locate
accD gene + 57002 58468 1467 Locate
psaI gene + 59153 59263 111 Locate
ycf4 gene + 59696 60250 555 Locate
cemA gene + 60811 61500 690 Locate
petA gene + 61717 62679 963 Locate
psbJ gene − 63764 63886 123 Locate
psbL gene − 64024 64140 117 Locate
psbF gene − 64164 64283 120 Locate
psbE gene − 64298 64549 252 Locate
petL gene + 65479 65574 96 Locate
petG gene + 65749 65862 114 Locate
trnW-CCA gene − 65988 66061 74 Locate
trnP-UGG gene − 66225 66298 74 Locate
psaJ gene + 66573 66707 135 Locate
rpl33 gene + 67180 67380 201 Locate
rps18 gene + 67530 67835 306 Locate
rpl20 gene − 68055 68441 387 Locate
rps12 gene − 69200 69313 114 Locate
clpP gene − 69441 71310 1870 Locate
psbB gene + 71748 73274 1527 Locate
psbT gene + 73468 73569 102 Locate
psbN gene − 73643 73774 132 Locate
psbH gene + 73878 74099 222 Locate
petB gene + 74224 75603 1380 Locate
petD gene + 75798 77007 1210 Locate
rpoA gene − 77170 78183 1014 Locate
rps11 gene − 78255 78686 432 Locate
rpl36 gene − 78774 78887 114 Locate
infA gene − 78983 79216 234 Locate
rps8 gene − 79334 79747 414 Locate
rpl14 gene − 79920 80288 369 Locate
rpl16 gene − 80415 81719 1305 Locate
rps3 gene − 81875 82537 663 Locate
rpl22 gene − 82522 82986 465 Locate
rps19 gene − 83046 83318 273 Locate
rpl2 gene − 83377 84868 1492 Locate
rpl23 gene − 84887 85168 282 Locate
trnI-CAU gene − 85334 85407 74 Locate
ycf2 gene + 85496 92353 6858 Locate
trnL-CAA gene − 92905 92985 81 Locate
ndhB gene − 93530 95687 2158 Locate
rps7 gene − 96016 96483 468 Locate
rps12 gene − 96537 97330 794 Locate
trnV-GAC gene + 98946 99017 72 Locate
rrn16 gene + 99245 100735 1491 Locate
trnI-GAU gene + 101025 102033 1009 Locate
trnA-UGC gene + 102098 102976 879 Locate
rrn23 gene + 103168 105976 2809 Locate
rrn4.5 gene + 106077 106179 103 Locate
rrn5 gene + 106435 106555 121 Locate
trnR-ACG gene + 106790 106863 74 Locate
trnN-GUU gene − 107436 107507 72 Locate
ndhF gene − 108897 111119 2223 Locate
rpl32 gene + 111626 111802 177 Locate
trnL-UAG gene + 112335 112414 80 Locate
ccsA gene + 112499 113470 972 Locate
ndhD gene − 113651 115153 1503 Locate
psaC gene − 115271 115516 246 Locate
ndhE gene − 115779 116081 303 Locate
ndhG gene − 116300 116830 531 Locate
ndhI gene − 117209 117715 507 Locate
ndhA gene − 117802 119968 2167 Locate
ndhH gene − 119970 121151 1182 Locate
rps15 gene − 121253 121588 336 Locate
ycf1 gene − 121920 127403 5484 Locate
trnN-GUU gene + 127729 127800 72 Locate
trnR-ACG gene − 128373 128446 74 Locate
rrn5 gene − 128681 128801 121 Locate
rrn4.5 gene − 129057 129159 103 Locate
rrn23 gene − 129260 132068 2809 Locate
trnA-UGC gene − 132260 133138 879 Locate
trnI-GAU gene − 133203 134211 1009 Locate
rrn16 gene − 134501 135991 1491 Locate
trnV-GAC gene − 136219 136290 72 Locate
rps12 gene + 137906 138699 794 Locate
rps7 gene + 138753 139220 468 Locate
ndhB gene + 139549 141706 2158 Locate
trnL-CAA gene + 142251 142331 81 Locate
ycf2 gene − 142883 149740 6858 Locate
trnI-CAU gene + 149829 149902 74 Locate
rpl23 gene + 150068 150349 282 Locate
rpl2 gene + 150368 151859 1492 Locate
Status Available
Accession NC_085358.1
Length 151,953 bp
GC content 38.5%
Annotated genes 130
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 12 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources