Phlomoides tatsienensis chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · NC_085359.1 · 7–80 bp · −
psbA · NC_085359.1 · 311–1,369 bp · −
trnK-UUU · NC_085359.1 · 1,602–4,192 bp · −
matK · NC_085359.1 · 1,906–3,441 bp · −
rps16 · NC_085359.1 · 5,130–6,269 bp · −
trnQ-UUG · NC_085359.1 · 7,263–7,334 bp · −
trnS-GCU · NC_085359.1 · 8,461–8,548 bp · −
atpA · NC_085359.1 · 10,210–11,733 bp · −
atpF · NC_085359.1 · 11,822–13,033 bp · −
atpH · NC_085359.1 · 13,399–13,644 bp · −
atpI · NC_085359.1 · 14,633–15,376 bp · −
rps2 · NC_085359.1 · 15,607–16,506 bp · −
rpoC2 · NC_085359.1 · 16,537–20,727 bp · −
rpoC1 · NC_085359.1 · 20,882–23,720 bp · −
rpoB · NC_085359.1 · 23,747–26,959 bp · −
psbM · NC_085359.1 · 29,861–29,965 bp · −
trnD-GUC · NC_085359.1 · 30,504–30,577 bp · −
trnY-GUA · NC_085359.1 · 30,690–30,773 bp · −
trnE-UUC · NC_085359.1 · 30,833–30,905 bp · −
trnS-UGA · NC_085359.1 · 35,426–35,518 bp · −
trnfM-CAU · NC_085359.1 · 36,486–36,559 bp · −
rps14 · NC_085359.1 · 36,709–37,011 bp · −
psaB · NC_085359.1 · 37,139–39,343 bp · −
psaA · NC_085359.1 · 39,369–41,621 bp · −
ycf3 · NC_085359.1 · 42,352–44,290 bp · −
rps4 · NC_085359.1 · 44,986–45,591 bp · −
trnT-UGU · NC_085359.1 · 45,984–46,056 bp · −
ndhJ · NC_085359.1 · 48,334–48,810 bp · −
ndhK · NC_085359.1 · 48,911–49,672 bp · −
ndhC · NC_085359.1 · 49,642–50,004 bp · −
trnV-UAC · NC_085359.1 · 50,959–51,610 bp · −
atpE · NC_085359.1 · 52,093–52,494 bp · −
atpB · NC_085359.1 · 52,491–53,987 bp · −
psbJ · NC_085359.1 · 63,673–63,795 bp · −
psbL · NC_085359.1 · 63,933–64,049 bp · −
psbF · NC_085359.1 · 64,073–64,192 bp · −
psbE · NC_085359.1 · 64,207–64,458 bp · −
trnW-CCA · NC_085359.1 · 65,897–65,970 bp · −
trnP-UGG · NC_085359.1 · 66,134–66,207 bp · −
rpl20 · NC_085359.1 · 67,965–68,351 bp · −
rps12 · NC_085359.1 · 69,114–69,227 bp · −
rps12 · NC_085359.1 · 96,437–97,230 bp · −
clpP · NC_085359.1 · 69,354–71,222 bp · −
psbN · NC_085359.1 · 73,559–73,690 bp · −
rpoA · NC_085359.1 · 77,092–78,105 bp · −
rps11 · NC_085359.1 · 78,177–78,608 bp · −
rpl36 · NC_085359.1 · 78,696–78,809 bp · −
infA · NC_085359.1 · 78,905–79,138 bp · −
rps8 · NC_085359.1 · 79,261–79,674 bp · −
rpl14 · NC_085359.1 · 79,847–80,215 bp · −
rpl16 · NC_085359.1 · 80,342–81,649 bp · −
rps3 · NC_085359.1 · 81,805–82,467 bp · −
rpl22 · NC_085359.1 · 82,452–82,916 bp · −
rps19 · NC_085359.1 · 82,976–83,248 bp · −
rpl2 · NC_085359.1 · 83,307–84,798 bp · −
rpl23 · NC_085359.1 · 84,817–85,098 bp · −
trnI-CAU · NC_085359.1 · 85,264–85,337 bp · −
trnL-CAA · NC_085359.1 · 92,805–92,885 bp · −
ndhB · NC_085359.1 · 93,430–95,587 bp · −
rps7 · NC_085359.1 · 95,916–96,383 bp · −
trnN-GUU · NC_085359.1 · 107,372–107,443 bp · −
ndhF · NC_085359.1 · 108,833–111,055 bp · −
ndhD · NC_085359.1 · 113,588–115,090 bp · −
psaC · NC_085359.1 · 115,211–115,456 bp · −
ndhE · NC_085359.1 · 115,719–116,021 bp · −
ndhG · NC_085359.1 · 116,240–116,770 bp · −
ndhI · NC_085359.1 · 117,152–117,658 bp · −
ndhA · NC_085359.1 · 117,745–119,912 bp · −
ndhH · NC_085359.1 · 119,914–121,095 bp · −
rps15 · NC_085359.1 · 121,197–121,532 bp · −
ycf1 · NC_085359.1 · 121,851–127,343 bp · −
trnR-ACG · NC_085359.1 · 128,313–128,386 bp · −
rrn5 · NC_085359.1 · 128,621–128,741 bp · −
rrn4.5 · NC_085359.1 · 128,997–129,099 bp · −
rrn23 · NC_085359.1 · 129,205–132,013 bp · −
trnA-UGC · NC_085359.1 · 132,205–133,083 bp · −
trnI-GAU · NC_085359.1 · 133,148–134,156 bp · −
rrn16 · NC_085359.1 · 134,446–135,936 bp · −
trnV-GAC · NC_085359.1 · 136,164–136,235 bp · −
ycf2 · NC_085359.1 · 142,859–149,686 bp · −
psbK · NC_085359.1 · 7,671–7,856 bp · +
psbI · NC_085359.1 · 8,224–8,334 bp · +
trnG-UCC · NC_085359.1 · 9,107–9,865 bp · +
trnR-UCU · NC_085359.1 · 10,042–10,113 bp · +
trnC-GCA · NC_085359.1 · 28,067–28,137 bp · +
petN · NC_085359.1 · 28,969–29,058 bp · +
trnT-GGU · NC_085359.1 · 31,497–31,568 bp · +
psbD · NC_085359.1 · 32,817–33,878 bp · +
psbC · NC_085359.1 · 33,826–35,247 bp · +
psbZ · NC_085359.1 · 35,845–36,033 bp · +
trnG-GCC · NC_085359.1 · 36,263–36,333 bp · +
trnS-GGA · NC_085359.1 · 44,614–44,700 bp · +
trnL-UAA · NC_085359.1 · 46,726–47,291 bp · +
trnF-GAA · NC_085359.1 · 47,583–47,655 bp · +
trnM-CAU · NC_085359.1 · 51,799–51,871 bp · +
rbcL · NC_085359.1 · 54,776–56,242 bp · +
accD · NC_085359.1 · 56,917–58,383 bp · +
psaI · NC_085359.1 · 59,068–59,178 bp · +
ycf4 · NC_085359.1 · 59,635–60,189 bp · +
cemA · NC_085359.1 · 60,750–61,439 bp · +
petA · NC_085359.1 · 61,656–62,618 bp · +
petL · NC_085359.1 · 65,388–65,483 bp · +
petG · NC_085359.1 · 65,658–65,771 bp · +
psaJ · NC_085359.1 · 66,482–66,616 bp · +
rpl33 · NC_085359.1 · 67,090–67,290 bp · +
rps18 · NC_085359.1 · 67,440–67,745 bp · +
rps12 · NC_085359.1 · 137,882–138,675 bp · +
psbB · NC_085359.1 · 71,661–73,187 bp · +
psbT · NC_085359.1 · 73,384–73,485 bp · +
psbH · NC_085359.1 · 73,794–74,015 bp · +
petB · NC_085359.1 · 74,140–75,521 bp · +
petD · NC_085359.1 · 75,716–76,929 bp · +
ycf2 · NC_085359.1 · 85,426–92,253 bp · +
trnV-GAC · NC_085359.1 · 98,877–98,948 bp · +
rrn16 · NC_085359.1 · 99,176–100,666 bp · +
trnI-GAU · NC_085359.1 · 100,956–101,964 bp · +
trnA-UGC · NC_085359.1 · 102,029–102,907 bp · +
rrn23 · NC_085359.1 · 103,099–105,907 bp · +
rrn4.5 · NC_085359.1 · 106,013–106,115 bp · +
rrn5 · NC_085359.1 · 106,371–106,491 bp · +
trnR-ACG · NC_085359.1 · 106,726–106,799 bp · +
rpl32 · NC_085359.1 · 111,561–111,737 bp · +
trnL-UAG · NC_085359.1 · 112,272–112,351 bp · +
ccsA · NC_085359.1 · 112,436–113,407 bp · +
trnN-GUU · NC_085359.1 · 127,669–127,740 bp · +
rps7 · NC_085359.1 · 138,729–139,196 bp · +
ndhB · NC_085359.1 · 139,525–141,682 bp · +
trnL-CAA · NC_085359.1 · 142,227–142,307 bp · +
trnI-CAU · NC_085359.1 · 149,775–149,848 bp · +
rpl23 · NC_085359.1 · 150,014–150,295 bp · +
rpl2 · NC_085359.1 · 150,314–151,805 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Phlomoides tatsienensis
ANNOTATED PLASTOME
NC_085359.1
151,899 bp · 130 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37975 75950 113924 151899 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
131 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 7 80 74 Locate
psbA gene − 311 1369 1059 Locate
trnK-UUU gene − 1602 4192 2591 Locate
matK gene − 1906 3441 1536 Locate
rps16 gene − 5130 6269 1140 Locate
trnQ-UUG gene − 7263 7334 72 Locate
psbK gene + 7671 7856 186 Locate
psbI gene + 8224 8334 111 Locate
trnS-GCU gene − 8461 8548 88 Locate
trnG-UCC gene + 9107 9865 759 Locate
trnR-UCU gene + 10042 10113 72 Locate
atpA gene − 10210 11733 1524 Locate
atpF gene − 11822 13033 1212 Locate
atpH gene − 13399 13644 246 Locate
atpI gene − 14633 15376 744 Locate
rps2 gene − 15607 16506 900 Locate
rpoC2 gene − 16537 20727 4191 Locate
rpoC1 gene − 20882 23720 2839 Locate
rpoB gene − 23747 26959 3213 Locate
trnC-GCA gene + 28067 28137 71 Locate
petN gene + 28969 29058 90 Locate
psbM gene − 29861 29965 105 Locate
trnD-GUC gene − 30504 30577 74 Locate
trnY-GUA gene − 30690 30773 84 Locate
trnE-UUC gene − 30833 30905 73 Locate
trnT-GGU gene + 31497 31568 72 Locate
psbD gene + 32817 33878 1062 Locate
psbC gene + 33826 35247 1422 Locate
trnS-UGA gene − 35426 35518 93 Locate
psbZ gene + 35845 36033 189 Locate
trnG-GCC gene + 36263 36333 71 Locate
trnfM-CAU gene − 36486 36559 74 Locate
rps14 gene − 36709 37011 303 Locate
psaB gene − 37139 39343 2205 Locate
psaA gene − 39369 41621 2253 Locate
ycf3 gene − 42352 44290 1939 Locate
trnS-GGA gene + 44614 44700 87 Locate
rps4 gene − 44986 45591 606 Locate
trnT-UGU gene − 45984 46056 73 Locate
trnL-UAA gene + 46726 47291 566 Locate
trnF-GAA gene + 47583 47655 73 Locate
ndhJ gene − 48334 48810 477 Locate
ndhK gene − 48911 49672 762 Locate
ndhC gene − 49642 50004 363 Locate
trnV-UAC gene − 50959 51610 652 Locate
trnM-CAU gene + 51799 51871 73 Locate
atpE gene − 52093 52494 402 Locate
atpB gene − 52491 53987 1497 Locate
rbcL gene + 54776 56242 1467 Locate
accD gene + 56917 58383 1467 Locate
psaI gene + 59068 59178 111 Locate
ycf4 gene + 59635 60189 555 Locate
cemA gene + 60750 61439 690 Locate
petA gene + 61656 62618 963 Locate
psbJ gene − 63673 63795 123 Locate
psbL gene − 63933 64049 117 Locate
psbF gene − 64073 64192 120 Locate
psbE gene − 64207 64458 252 Locate
petL gene + 65388 65483 96 Locate
petG gene + 65658 65771 114 Locate
trnW-CCA gene − 65897 65970 74 Locate
trnP-UGG gene − 66134 66207 74 Locate
psaJ gene + 66482 66616 135 Locate
rpl33 gene + 67090 67290 201 Locate
rps18 gene + 67440 67745 306 Locate
rpl20 gene − 67965 68351 387 Locate
rps12 gene − 69114 69227 114 Locate
clpP gene − 69354 71222 1869 Locate
psbB gene + 71661 73187 1527 Locate
psbT gene + 73384 73485 102 Locate
psbN gene − 73559 73690 132 Locate
psbH gene + 73794 74015 222 Locate
petB gene + 74140 75521 1382 Locate
petD gene + 75716 76929 1214 Locate
rpoA gene − 77092 78105 1014 Locate
rps11 gene − 78177 78608 432 Locate
rpl36 gene − 78696 78809 114 Locate
infA gene − 78905 79138 234 Locate
rps8 gene − 79261 79674 414 Locate
rpl14 gene − 79847 80215 369 Locate
rpl16 gene − 80342 81649 1308 Locate
rps3 gene − 81805 82467 663 Locate
rpl22 gene − 82452 82916 465 Locate
rps19 gene − 82976 83248 273 Locate
rpl2 gene − 83307 84798 1492 Locate
rpl23 gene − 84817 85098 282 Locate
trnI-CAU gene − 85264 85337 74 Locate
ycf2 gene + 85426 92253 6828 Locate
trnL-CAA gene − 92805 92885 81 Locate
ndhB gene − 93430 95587 2158 Locate
rps7 gene − 95916 96383 468 Locate
rps12 gene − 96437 97230 794 Locate
trnV-GAC gene + 98877 98948 72 Locate
rrn16 gene + 99176 100666 1491 Locate
trnI-GAU gene + 100956 101964 1009 Locate
trnA-UGC gene + 102029 102907 879 Locate
rrn23 gene + 103099 105907 2809 Locate
rrn4.5 gene + 106013 106115 103 Locate
rrn5 gene + 106371 106491 121 Locate
trnR-ACG gene + 106726 106799 74 Locate
trnN-GUU gene − 107372 107443 72 Locate
ndhF gene − 108833 111055 2223 Locate
rpl32 gene + 111561 111737 177 Locate
trnL-UAG gene + 112272 112351 80 Locate
ccsA gene + 112436 113407 972 Locate
ndhD gene − 113588 115090 1503 Locate
psaC gene − 115211 115456 246 Locate
ndhE gene − 115719 116021 303 Locate
ndhG gene − 116240 116770 531 Locate
ndhI gene − 117152 117658 507 Locate
ndhA gene − 117745 119912 2168 Locate
ndhH gene − 119914 121095 1182 Locate
rps15 gene − 121197 121532 336 Locate
ycf1 gene − 121851 127343 5493 Locate
trnN-GUU gene + 127669 127740 72 Locate
trnR-ACG gene − 128313 128386 74 Locate
rrn5 gene − 128621 128741 121 Locate
rrn4.5 gene − 128997 129099 103 Locate
rrn23 gene − 129205 132013 2809 Locate
trnA-UGC gene − 132205 133083 879 Locate
trnI-GAU gene − 133148 134156 1009 Locate
rrn16 gene − 134446 135936 1491 Locate
trnV-GAC gene − 136164 136235 72 Locate
rps12 gene + 137882 138675 794 Locate
rps7 gene + 138729 139196 468 Locate
ndhB gene + 139525 141682 2158 Locate
trnL-CAA gene + 142227 142307 81 Locate
ycf2 gene − 142859 149686 6828 Locate
trnI-CAU gene + 149775 149848 74 Locate
rpl23 gene + 150014 150295 282 Locate
rpl2 gene + 150314 151805 1492 Locate
Status Available
Accession NC_085359.1
Length 151,899 bp
GC content 38.5%
Annotated genes 130
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 12 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources