Phlomoides tuberosa chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · OR565910.1 · 2–76 bp · −
psbA · OR565910.1 · 306–1,364 bp · −
trnK-UUU · OR565910.1 · 1,597–4,183 bp · −
matK · OR565910.1 · 1,901–3,436 bp · −
rps16 · OR565910.1 · 5,099–6,238 bp · −
trnQ-UUG · OR565910.1 · 7,232–7,303 bp · −
trnS-GCU · OR565910.1 · 8,434–8,521 bp · −
atpA · OR565910.1 · 10,181–11,704 bp · −
atpF · OR565910.1 · 11,794–13,007 bp · −
atpH · OR565910.1 · 13,373–13,618 bp · −
atpI · OR565910.1 · 14,614–15,357 bp · −
rps2 · OR565910.1 · 15,588–16,298 bp · −
rpoC2 · OR565910.1 · 16,518–20,708 bp · −
rpoC1 · OR565910.1 · 20,863–23,700 bp · −
rpoB · OR565910.1 · 23,727–26,939 bp · −
psbM · OR565910.1 · 29,819–29,923 bp · −
trnD-GUC · OR565910.1 · 30,462–30,535 bp · −
trnY-GUA · OR565910.1 · 30,648–30,731 bp · −
trnE-UUC · OR565910.1 · 30,791–30,863 bp · −
trnS-UGA · OR565910.1 · 35,429–35,521 bp · −
trnfM-CAU · OR565910.1 · 36,495–36,568 bp · −
rps14 · OR565910.1 · 36,718–37,020 bp · −
psaB · OR565910.1 · 37,148–39,352 bp · −
psaA · OR565910.1 · 39,378–41,630 bp · −
ycf3 · OR565910.1 · 42,358–44,292 bp · −
rps4 · OR565910.1 · 44,980–45,585 bp · −
trnT-UGU · OR565910.1 · 45,993–46,065 bp · −
ndhJ · OR565910.1 · 48,338–48,814 bp · −
ndhK · OR565910.1 · 48,915–49,592 bp · −
ndhC · OR565910.1 · 49,646–50,008 bp · −
trnV-UAC · OR565910.1 · 50,962–51,614 bp · −
atpE · OR565910.1 · 52,098–52,499 bp · −
atpB · OR565910.1 · 52,496–53,992 bp · −
psbJ · OR565910.1 · 63,635–63,757 bp · −
psbL · OR565910.1 · 63,895–64,011 bp · −
psbF · OR565910.1 · 64,035–64,154 bp · −
psbE · OR565910.1 · 64,169–64,420 bp · −
trnW-CCA · OR565910.1 · 65,855–65,928 bp · −
trnP-UGG · OR565910.1 · 66,091–66,164 bp · −
rpl20 · OR565910.1 · 67,911–68,297 bp · −
rps12 · OR565910.1 · 69,058–69,171 bp · −
rps12 · OR565910.1 · 96,386–97,179 bp · −
clpP · OR565910.1 · 69,294–71,161 bp · −
psbN · OR565910.1 · 73,491–73,622 bp · −
rpoA · OR565910.1 · 77,025–78,038 bp · −
rps11 · OR565910.1 · 78,110–78,541 bp · −
rpl36 · OR565910.1 · 78,629–78,742 bp · −
infA · OR565910.1 · 78,838–79,071 bp · −
rps8 · OR565910.1 · 79,195–79,608 bp · −
rpl14 · OR565910.1 · 79,784–80,152 bp · −
rpl16 · OR565910.1 · 80,279–81,584 bp · −
rps3 · OR565910.1 · 81,740–82,402 bp · −
rpl22 · OR565910.1 · 82,387–82,851 bp · −
rps19 · OR565910.1 · 82,911–83,189 bp · −
rpl2 · OR565910.1 · 83,242–84,733 bp · −
rpl23 · OR565910.1 · 84,752–85,033 bp · −
trnI-CAU · OR565910.1 · 85,199–85,272 bp · −
trnL-CAA · OR565910.1 · 92,754–92,834 bp · −
ndhB · OR565910.1 · 93,379–95,590 bp · −
rps7 · OR565910.1 · 95,865–96,332 bp · −
trnN-GUU · OR565910.1 · 107,285–107,356 bp · −
ndhF · OR565910.1 · 108,746–110,968 bp · −
ndhD · OR565910.1 · 113,492–115,012 bp · −
psaC · OR565910.1 · 115,115–115,360 bp · −
ndhE · OR565910.1 · 115,622–115,927 bp · −
ndhG · OR565910.1 · 116,138–116,668 bp · −
ndhI · OR565910.1 · 117,040–117,546 bp · −
ndhA · OR565910.1 · 117,633–119,798 bp · −
ndhH · OR565910.1 · 119,800–120,981 bp · −
rps15 · OR565910.1 · 121,082–121,354 bp · −
ycf1 · OR565910.1 · 121,737–127,229 bp · −
trnR-ACG · OR565910.1 · 128,199–128,272 bp · −
rrn5 · OR565910.1 · 128,507–128,627 bp · −
rrn4.5 · OR565910.1 · 128,883–128,985 bp · −
rrn23 · OR565910.1 · 129,084–131,893 bp · −
trnA-UGC · OR565910.1 · 132,086–132,964 bp · −
trnI-GAU · OR565910.1 · 133,029–134,037 bp · −
rrn16 · OR565910.1 · 134,327–135,817 bp · −
trnV-GAC · OR565910.1 · 136,045–136,116 bp · −
ycf15 · OR565910.1 · 142,420–142,668 bp · −
ycf2 · OR565910.1 · 142,711–149,550 bp · −
psbK · OR565910.1 · 7,640–7,825 bp · +
psbI · OR565910.1 · 8,201–8,311 bp · +
trnG-UCC · OR565910.1 · 9,079–9,837 bp · +
trnR-UCU · OR565910.1 · 10,013–10,084 bp · +
trnC-GCA · OR565910.1 · 28,036–28,116 bp · +
petN · OR565910.1 · 28,938–29,033 bp · +
trnT-GGU · OR565910.1 · 31,446–31,516 bp · +
psbD · OR565910.1 · 32,765–33,826 bp · +
psbC · OR565910.1 · 33,774–35,195 bp · +
psbZ · OR565910.1 · 35,855–36,043 bp · +
trnG-GCC · OR565910.1 · 36,274–36,344 bp · +
trnS-GGA · OR565910.1 · 44,609–44,695 bp · +
trnL-UAA · OR565910.1 · 46,729–47,301 bp · +
trnF-GAA · OR565910.1 · 47,594–47,666 bp · +
trnM-CAU · OR565910.1 · 51,804–51,875 bp · +
rbcL · OR565910.1 · 54,800–56,245 bp · +
accD · OR565910.1 · 56,934–58,400 bp · +
psaI · OR565910.1 · 59,080–59,190 bp · +
ycf4 · OR565910.1 · 59,623–60,177 bp · +
cemA · OR565910.1 · 60,737–61,426 bp · +
petA · OR565910.1 · 61,643–62,605 bp · +
petL · OR565910.1 · 65,347–65,442 bp · +
petG · OR565910.1 · 65,617–65,730 bp · +
psaJ · OR565910.1 · 66,439–66,573 bp · +
rpl33 · OR565910.1 · 67,043–67,243 bp · +
rps18 · OR565910.1 · 67,389–67,694 bp · +
rps12 · OR565910.1 · 137,732–138,525 bp · +
psbB · OR565910.1 · 71,597–73,123 bp · +
psbT · OR565910.1 · 73,316–73,417 bp · +
psbH · OR565910.1 · 73,726–73,947 bp · +
petB · OR565910.1 · 74,072–75,449 bp · +
petD · OR565910.1 · 75,644–76,862 bp · +
ycf2 · OR565910.1 · 85,361–92,200 bp · +
ycf15 · OR565910.1 · 92,243–92,491 bp · +
trnV-GAC · OR565910.1 · 98,795–98,866 bp · +
rrn16 · OR565910.1 · 99,094–100,584 bp · +
trnI-GAU · OR565910.1 · 100,874–101,882 bp · +
trnA-UGC · OR565910.1 · 101,947–102,825 bp · +
rrn23 · OR565910.1 · 103,018–105,827 bp · +
rrn4.5 · OR565910.1 · 105,926–106,028 bp · +
rrn5 · OR565910.1 · 106,284–106,404 bp · +
trnR-ACG · OR565910.1 · 106,639–106,712 bp · +
rpl32 · OR565910.1 · 111,474–111,650 bp · +
trnL-UAG · OR565910.1 · 112,177–112,256 bp · +
ccsA · OR565910.1 · 112,341–113,312 bp · +
trnN-GUU · OR565910.1 · 127,555–127,626 bp · +
rps7 · OR565910.1 · 138,579–139,046 bp · +
ndhB · OR565910.1 · 139,321–141,532 bp · +
trnL-CAA · OR565910.1 · 142,077–142,157 bp · +
trnI-CAU · OR565910.1 · 149,639–149,712 bp · +
rpl23 · OR565910.1 · 149,878–150,159 bp · +
rpl2 · OR565910.1 · 150,178–151,669 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Phlomoides tuberosa
ANNOTATED PLASTOME
OR565910.1
151,763 bp · 132 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37941 75882 113822 151763 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
133 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 2 76 75 Locate
psbA gene − 306 1364 1059 Locate
trnK-UUU gene − 1597 4183 2587 Locate
matK gene − 1901 3436 1536 Locate
rps16 gene − 5099 6238 1140 Locate
trnQ-UUG gene − 7232 7303 72 Locate
psbK gene + 7640 7825 186 Locate
psbI gene + 8201 8311 111 Locate
trnS-GCU gene − 8434 8521 88 Locate
trnG-UCC gene + 9079 9837 759 Locate
trnR-UCU gene + 10013 10084 72 Locate
atpA gene − 10181 11704 1524 Locate
atpF gene − 11794 13007 1214 Locate
atpH gene − 13373 13618 246 Locate
atpI gene − 14614 15357 744 Locate
rps2 gene − 15588 16298 711 Locate
rpoC2 gene − 16518 20708 4191 Locate
rpoC1 gene − 20863 23700 2838 Locate
rpoB gene − 23727 26939 3213 Locate
trnC-GCA gene + 28036 28116 81 Locate
petN gene + 28938 29033 96 Locate
psbM gene − 29819 29923 105 Locate
trnD-GUC gene − 30462 30535 74 Locate
trnY-GUA gene − 30648 30731 84 Locate
trnE-UUC gene − 30791 30863 73 Locate
trnT-GGU gene + 31446 31516 71 Locate
psbD gene + 32765 33826 1062 Locate
psbC gene + 33774 35195 1422 Locate
trnS-UGA gene − 35429 35521 93 Locate
psbZ gene + 35855 36043 189 Locate
trnG-GCC gene + 36274 36344 71 Locate
trnfM-CAU gene − 36495 36568 74 Locate
rps14 gene − 36718 37020 303 Locate
psaB gene − 37148 39352 2205 Locate
psaA gene − 39378 41630 2253 Locate
ycf3 gene − 42358 44292 1935 Locate
trnS-GGA gene + 44609 44695 87 Locate
rps4 gene − 44980 45585 606 Locate
trnT-UGU gene − 45993 46065 73 Locate
trnL-UAA gene + 46729 47301 573 Locate
trnF-GAA gene + 47594 47666 73 Locate
ndhJ gene − 48338 48814 477 Locate
ndhK gene − 48915 49592 678 Locate
ndhC gene − 49646 50008 363 Locate
trnV-UAC gene − 50962 51614 653 Locate
trnM-CAU gene + 51804 51875 72 Locate
atpE gene − 52098 52499 402 Locate
atpB gene − 52496 53992 1497 Locate
rbcL gene + 54800 56245 1446 Locate
accD gene + 56934 58400 1467 Locate
psaI gene + 59080 59190 111 Locate
ycf4 gene + 59623 60177 555 Locate
cemA gene + 60737 61426 690 Locate
petA gene + 61643 62605 963 Locate
psbJ gene − 63635 63757 123 Locate
psbL gene − 63895 64011 117 Locate
psbF gene − 64035 64154 120 Locate
psbE gene − 64169 64420 252 Locate
petL gene + 65347 65442 96 Locate
petG gene + 65617 65730 114 Locate
trnW-CCA gene − 65855 65928 74 Locate
trnP-UGG gene − 66091 66164 74 Locate
psaJ gene + 66439 66573 135 Locate
rpl33 gene + 67043 67243 201 Locate
rps18 gene + 67389 67694 306 Locate
rpl20 gene − 67911 68297 387 Locate
rps12 gene − 69058 69171 114 Locate
clpP gene − 69294 71161 1868 Locate
psbB gene + 71597 73123 1527 Locate
psbT gene + 73316 73417 102 Locate
psbN gene − 73491 73622 132 Locate
psbH gene + 73726 73947 222 Locate
petB gene + 74072 75449 1378 Locate
petD gene + 75644 76862 1219 Locate
rpoA gene − 77025 78038 1014 Locate
rps11 gene − 78110 78541 432 Locate
rpl36 gene − 78629 78742 114 Locate
infA gene − 78838 79071 234 Locate
rps8 gene − 79195 79608 414 Locate
rpl14 gene − 79784 80152 369 Locate
rpl16 gene − 80279 81584 1306 Locate
rps3 gene − 81740 82402 663 Locate
rpl22 gene − 82387 82851 465 Locate
rps19 gene − 82911 83189 279 Locate
rpl2 gene − 83242 84733 1492 Locate
rpl23 gene − 84752 85033 282 Locate
trnI-CAU gene − 85199 85272 74 Locate
ycf2 gene + 85361 92200 6840 Locate
ycf15 gene + 92243 92491 249 Locate
trnL-CAA gene − 92754 92834 81 Locate
ndhB gene − 93379 95590 2212 Locate
rps7 gene − 95865 96332 468 Locate
rps12 gene − 96386 97179 794 Locate
trnV-GAC gene + 98795 98866 72 Locate
rrn16 gene + 99094 100584 1491 Locate
trnI-GAU gene + 100874 101882 1009 Locate
trnA-UGC gene + 101947 102825 879 Locate
rrn23 gene + 103018 105827 2810 Locate
rrn4.5 gene + 105926 106028 103 Locate
rrn5 gene + 106284 106404 121 Locate
trnR-ACG gene + 106639 106712 74 Locate
trnN-GUU gene − 107285 107356 72 Locate
ndhF gene − 108746 110968 2223 Locate
rpl32 gene + 111474 111650 177 Locate
trnL-UAG gene + 112177 112256 80 Locate
ccsA gene + 112341 113312 972 Locate
ndhD gene − 113492 115012 1521 Locate
psaC gene − 115115 115360 246 Locate
ndhE gene − 115622 115927 306 Locate
ndhG gene − 116138 116668 531 Locate
ndhI gene − 117040 117546 507 Locate
ndhA gene − 117633 119798 2166 Locate
ndhH gene − 119800 120981 1182 Locate
rps15 gene − 121082 121354 273 Locate
ycf1 gene − 121737 127229 5493 Locate
trnN-GUU gene + 127555 127626 72 Locate
trnR-ACG gene − 128199 128272 74 Locate
rrn5 gene − 128507 128627 121 Locate
rrn4.5 gene − 128883 128985 103 Locate
rrn23 gene − 129084 131893 2810 Locate
trnA-UGC gene − 132086 132964 879 Locate
trnI-GAU gene − 133029 134037 1009 Locate
rrn16 gene − 134327 135817 1491 Locate
trnV-GAC gene − 136045 136116 72 Locate
rps12 gene + 137732 138525 794 Locate
rps7 gene + 138579 139046 468 Locate
ndhB gene + 139321 141532 2212 Locate
trnL-CAA gene + 142077 142157 81 Locate
ycf15 gene − 142420 142668 249 Locate
ycf2 gene − 142711 149550 6840 Locate
trnI-CAU gene + 149639 149712 74 Locate
rpl23 gene + 149878 150159 282 Locate
rpl2 gene + 150178 151669 1492 Locate
Status Available
Accession OR565910.1
Length 151,763 bp
GC content 38.5%
Annotated genes 132
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 14 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources