Phlomoides umbrosa chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · NC_061394.1 · 9–82 bp · −
psbA · NC_061394.1 · 313–1,371 bp · −
trnK-UUU · NC_061394.1 · 1,604–4,194 bp · −
matK · NC_061394.1 · 1,909–3,444 bp · −
rps16 · NC_061394.1 · 5,129–6,268 bp · −
trnQ-UUG · NC_061394.1 · 7,005–7,076 bp · −
trnS-GCU · NC_061394.1 · 8,219–8,306 bp · −
atpA · NC_061394.1 · 9,960–11,483 bp · −
atpF · NC_061394.1 · 11,572–12,781 bp · −
atpH · NC_061394.1 · 13,159–13,404 bp · −
atpI · NC_061394.1 · 14,393–15,136 bp · −
rps2 · NC_061394.1 · 15,367–16,077 bp · −
rpoC2 · NC_061394.1 · 16,297–20,487 bp · −
rpoC1 · NC_061394.1 · 20,642–23,479 bp · −
rpoB · NC_061394.1 · 23,506–26,718 bp · −
psbM · NC_061394.1 · 29,609–29,713 bp · −
trnD-GUC · NC_061394.1 · 30,252–30,325 bp · −
trnY-GUA · NC_061394.1 · 30,438–30,521 bp · −
trnE-UUC · NC_061394.1 · 30,581–30,653 bp · −
trnS-UGA · NC_061394.1 · 35,230–35,322 bp · −
trnfM-CAU · NC_061394.1 · 36,290–36,363 bp · −
rps14 · NC_061394.1 · 36,513–36,815 bp · −
psaB · NC_061394.1 · 36,943–39,147 bp · −
psaA · NC_061394.1 · 39,173–41,425 bp · −
ycf3 · NC_061394.1 · 42,158–44,100 bp · −
rps4 · NC_061394.1 · 44,791–45,396 bp · −
trnT-UGU · NC_061394.1 · 45,789–45,861 bp · −
ndhJ · NC_061394.1 · 48,140–48,616 bp · −
ndhK · NC_061394.1 · 48,717–49,394 bp · −
ndhC · NC_061394.1 · 49,448–49,810 bp · −
trnV-UAC · NC_061394.1 · 50,779–51,431 bp · −
atpE · NC_061394.1 · 51,915–52,316 bp · −
atpB · NC_061394.1 · 52,313–53,809 bp · −
psbJ · NC_061394.1 · 63,453–63,575 bp · −
psbL · NC_061394.1 · 63,713–63,829 bp · −
psbF · NC_061394.1 · 63,853–63,972 bp · −
psbE · NC_061394.1 · 63,987–64,238 bp · −
trnW-CCA · NC_061394.1 · 65,677–65,750 bp · −
trnP-UGG · NC_061394.1 · 65,914–65,987 bp · −
rpl20 · NC_061394.1 · 67,741–68,127 bp · −
rps12 · NC_061394.1 · 68,888–69,001 bp · −
rps12 · NC_061394.1 · 96,215–97,008 bp · −
clpP · NC_061394.1 · 69,128–70,995 bp · −
psbN · NC_061394.1 · 73,328–73,459 bp · −
rpoA · NC_061394.1 · 76,862–77,875 bp · −
rps11 · NC_061394.1 · 77,947–78,363 bp · −
rpl36 · NC_061394.1 · 78,466–78,579 bp · −
infA · NC_061394.1 · 78,675–78,908 bp · −
rps8 · NC_061394.1 · 79,025–79,438 bp · −
rpl14 · NC_061394.1 · 79,610–79,978 bp · −
rpl16 · NC_061394.1 · 80,105–81,409 bp · −
rps3 · NC_061394.1 · 81,565–82,227 bp · −
rpl22 · NC_061394.1 · 82,212–82,682 bp · −
rps19 · NC_061394.1 · 82,742–82,891 bp · −
rpl2 · NC_061394.1 · 83,073–84,564 bp · −
rpl23 · NC_061394.1 · 84,583–84,864 bp · −
trnI-CAU · NC_061394.1 · 85,030–85,103 bp · −
trnL-CAA · NC_061394.1 · 92,583–92,663 bp · −
ndhB · NC_061394.1 · 93,208–95,419 bp · −
rps7 · NC_061394.1 · 95,694–96,161 bp · −
trnN-GUU · NC_061394.1 · 107,114–107,185 bp · −
ndhF · NC_061394.1 · 108,575–110,797 bp · −
ndhD · NC_061394.1 · 113,347–114,876 bp · −
psaC · NC_061394.1 · 114,968–115,213 bp · −
ndhE · NC_061394.1 · 115,476–115,781 bp · −
ndhG · NC_061394.1 · 115,997–116,527 bp · −
ndhI · NC_061394.1 · 116,910–117,416 bp · −
ndhA · NC_061394.1 · 117,503–119,669 bp · −
ndhH · NC_061394.1 · 119,671–120,852 bp · −
rps15 · NC_061394.1 · 120,954–121,226 bp · −
ycf1 · NC_061394.1 · 121,621–127,095 bp · −
trnR-ACG · NC_061394.1 · 128,065–128,138 bp · −
rrn5 · NC_061394.1 · 128,373–128,493 bp · −
rrn4.5 · NC_061394.1 · 128,749–128,851 bp · −
rrn23 · NC_061394.1 · 128,950–131,760 bp · −
trnA-UGC · NC_061394.1 · 131,952–132,830 bp · −
trnI-GAU · NC_061394.1 · 132,895–133,903 bp · −
rrn16 · NC_061394.1 · 134,193–135,683 bp · −
trnV-GAC · NC_061394.1 · 135,911–135,982 bp · −
ycf2 · NC_061394.1 · 142,575–149,414 bp · −
psbK · NC_061394.1 · 7,413–7,598 bp · +
psbI · NC_061394.1 · 7,969–8,079 bp · +
trnG-UCC · NC_061394.1 · 8,865–9,625 bp · +
trnR-UCU · NC_061394.1 · 9,792–9,863 bp · +
trnC-GCA · NC_061394.1 · 27,826–27,896 bp · +
petN · NC_061394.1 · 28,728–28,817 bp · +
trnT-GGU · NC_061394.1 · 31,249–31,320 bp · +
psbD · NC_061394.1 · 32,568–33,629 bp · +
psbC · NC_061394.1 · 33,577–34,998 bp · +
psbZ · NC_061394.1 · 35,650–35,838 bp · +
trnG-GCC · NC_061394.1 · 36,069–36,139 bp · +
trnS-GGA · NC_061394.1 · 44,418–44,504 bp · +
trnL-UAA · NC_061394.1 · 46,531–47,096 bp · +
trnF-GAA · NC_061394.1 · 47,389–47,461 bp · +
trnM-CAU · NC_061394.1 · 51,620–51,692 bp · +
rbcL · NC_061394.1 · 54,612–56,057 bp · +
accD · NC_061394.1 · 56,732–58,198 bp · +
psaI · NC_061394.1 · 58,882–58,992 bp · +
ycf4 · NC_061394.1 · 59,425–59,979 bp · +
cemA · NC_061394.1 · 60,540–61,229 bp · +
petA · NC_061394.1 · 61,446–62,408 bp · +
petL · NC_061394.1 · 65,168–65,263 bp · +
petG · NC_061394.1 · 65,438–65,551 bp · +
psaJ · NC_061394.1 · 66,262–66,396 bp · +
rpl33 · NC_061394.1 · 66,869–67,069 bp · +
rps18 · NC_061394.1 · 67,217–67,522 bp · +
psbB · NC_061394.1 · 71,434–72,960 bp · +
psbT · NC_061394.1 · 73,153–73,254 bp · +
psbH · NC_061394.1 · 73,563–73,784 bp · +
petB · NC_061394.1 · 73,909–75,295 bp · +
petD · NC_061394.1 · 75,490–76,699 bp · +
ycf2 · NC_061394.1 · 85,192–92,031 bp · +
trnV-GAC · NC_061394.1 · 98,624–98,695 bp · +
rrn16 · NC_061394.1 · 98,923–100,413 bp · +
trnI-GAU · NC_061394.1 · 100,703–101,711 bp · +
trnA-UGC · NC_061394.1 · 101,776–102,654 bp · +
rrn23 · NC_061394.1 · 102,846–105,656 bp · +
rrn4.5 · NC_061394.1 · 105,755–105,857 bp · +
rrn5 · NC_061394.1 · 106,113–106,233 bp · +
trnR-ACG · NC_061394.1 · 106,468–106,541 bp · +
ycf1 · NC_061394.1 · 107,511–108,610 bp · +
rpl32 · NC_061394.1 · 111,319–111,495 bp · +
trnL-UAG · NC_061394.1 · 112,031–112,106 bp · +
ccsA · NC_061394.1 · 112,195–113,166 bp · +
trnN-GUU · NC_061394.1 · 127,421–127,492 bp · +
rps7 · NC_061394.1 · 138,445–138,912 bp · +
ndhB · NC_061394.1 · 139,187–141,398 bp · +
trnL-CAA · NC_061394.1 · 141,943–142,023 bp · +
trnI-CAU · NC_061394.1 · 149,503–149,576 bp · +
rpl23 · NC_061394.1 · 149,742–150,023 bp · +
rpl2 · NC_061394.1 · 150,042–151,533 bp · +
rps19 · NC_061394.1 · 151,586–151,628 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Phlomoides umbrosa
ANNOTATED PLASTOME
NC_061394.1
152,008 bp · 131 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38002 76004 114006 152008 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG ycf1 rpl32 trnL-UAG ccsA trnN-GUU rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2 rps19
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
132 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 9 82 74 Locate
psbA gene − 313 1371 1059 Locate
trnK-UUU gene − 1604 4194 2591 Locate
matK gene − 1909 3444 1536 Locate
rps16 gene − 5129 6268 1140 Locate
trnQ-UUG gene − 7005 7076 72 Locate
psbK gene + 7413 7598 186 Locate
psbI gene + 7969 8079 111 Locate
trnS-GCU gene − 8219 8306 88 Locate
trnG-UCC gene + 8865 9625 761 Locate
trnR-UCU gene + 9792 9863 72 Locate
atpA gene − 9960 11483 1524 Locate
atpF gene − 11572 12781 1210 Locate
atpH gene − 13159 13404 246 Locate
atpI gene − 14393 15136 744 Locate
rps2 gene − 15367 16077 711 Locate
rpoC2 gene − 16297 20487 4191 Locate
rpoC1 gene − 20642 23479 2838 Locate
rpoB gene − 23506 26718 3213 Locate
trnC-GCA gene + 27826 27896 71 Locate
petN gene + 28728 28817 90 Locate
psbM gene − 29609 29713 105 Locate
trnD-GUC gene − 30252 30325 74 Locate
trnY-GUA gene − 30438 30521 84 Locate
trnE-UUC gene − 30581 30653 73 Locate
trnT-GGU gene + 31249 31320 72 Locate
psbD gene + 32568 33629 1062 Locate
psbC gene + 33577 34998 1422 Locate
trnS-UGA gene − 35230 35322 93 Locate
psbZ gene + 35650 35838 189 Locate
trnG-GCC gene + 36069 36139 71 Locate
trnfM-CAU gene − 36290 36363 74 Locate
rps14 gene − 36513 36815 303 Locate
psaB gene − 36943 39147 2205 Locate
psaA gene − 39173 41425 2253 Locate
ycf3 gene − 42158 44100 1943 Locate
trnS-GGA gene + 44418 44504 87 Locate
rps4 gene − 44791 45396 606 Locate
trnT-UGU gene − 45789 45861 73 Locate
trnL-UAA gene + 46531 47096 566 Locate
trnF-GAA gene + 47389 47461 73 Locate
ndhJ gene − 48140 48616 477 Locate
ndhK gene − 48717 49394 678 Locate
ndhC gene − 49448 49810 363 Locate
trnV-UAC gene − 50779 51431 653 Locate
trnM-CAU gene + 51620 51692 73 Locate
atpE gene − 51915 52316 402 Locate
atpB gene − 52313 53809 1497 Locate
rbcL gene + 54612 56057 1446 Locate
accD gene + 56732 58198 1467 Locate
psaI gene + 58882 58992 111 Locate
ycf4 gene + 59425 59979 555 Locate
cemA gene + 60540 61229 690 Locate
petA gene + 61446 62408 963 Locate
psbJ gene − 63453 63575 123 Locate
psbL gene − 63713 63829 117 Locate
psbF gene − 63853 63972 120 Locate
psbE gene − 63987 64238 252 Locate
petL gene + 65168 65263 96 Locate
petG gene + 65438 65551 114 Locate
trnW-CCA gene − 65677 65750 74 Locate
trnP-UGG gene − 65914 65987 74 Locate
psaJ gene + 66262 66396 135 Locate
rpl33 gene + 66869 67069 201 Locate
rps18 gene + 67217 67522 306 Locate
rpl20 gene − 67741 68127 387 Locate
rps12 gene − 68888 69001 114 Locate
clpP gene − 69128 70995 1868 Locate
psbB gene + 71434 72960 1527 Locate
psbT gene + 73153 73254 102 Locate
psbN gene − 73328 73459 132 Locate
psbH gene + 73563 73784 222 Locate
petB gene + 73909 75295 1387 Locate
petD gene + 75490 76699 1210 Locate
rpoA gene − 76862 77875 1014 Locate
rps11 gene − 77947 78363 417 Locate
rpl36 gene − 78466 78579 114 Locate
infA gene − 78675 78908 234 Locate
rps8 gene − 79025 79438 414 Locate
rpl14 gene − 79610 79978 369 Locate
rpl16 gene − 80105 81409 1305 Locate
rps3 gene − 81565 82227 663 Locate
rpl22 gene − 82212 82682 471 Locate
rps19 gene − 82742 82891 150 Locate
rpl2 gene − 83073 84564 1492 Locate
rpl23 gene − 84583 84864 282 Locate
trnI-CAU gene − 85030 85103 74 Locate
ycf2 gene + 85192 92031 6840 Locate
trnL-CAA gene − 92583 92663 81 Locate
ndhB gene − 93208 95419 2212 Locate
rps7 gene − 95694 96161 468 Locate
rps12 gene − 96215 97008 794 Locate
trnV-GAC gene + 98624 98695 72 Locate
rrn16 gene + 98923 100413 1491 Locate
trnI-GAU gene + 100703 101711 1009 Locate
trnA-UGC gene + 101776 102654 879 Locate
rrn23 gene + 102846 105656 2811 Locate
rrn4.5 gene + 105755 105857 103 Locate
rrn5 gene + 106113 106233 121 Locate
trnR-ACG gene + 106468 106541 74 Locate
trnN-GUU gene − 107114 107185 72 Locate
ycf1 gene + 107511 108610 1100 Locate
ndhF gene − 108575 110797 2223 Locate
rpl32 gene + 111319 111495 177 Locate
trnL-UAG gene + 112031 112106 76 Locate
ccsA gene + 112195 113166 972 Locate
ndhD gene − 113347 114876 1530 Locate
psaC gene − 114968 115213 246 Locate
ndhE gene − 115476 115781 306 Locate
ndhG gene − 115997 116527 531 Locate
ndhI gene − 116910 117416 507 Locate
ndhA gene − 117503 119669 2167 Locate
ndhH gene − 119671 120852 1182 Locate
rps15 gene − 120954 121226 273 Locate
ycf1 gene − 121621 127095 5475 Locate
trnN-GUU gene + 127421 127492 72 Locate
trnR-ACG gene − 128065 128138 74 Locate
rrn5 gene − 128373 128493 121 Locate
rrn4.5 gene − 128749 128851 103 Locate
rrn23 gene − 128950 131760 2811 Locate
trnA-UGC gene − 131952 132830 879 Locate
trnI-GAU gene − 132895 133903 1009 Locate
rrn16 gene − 134193 135683 1491 Locate
trnV-GAC gene − 135911 135982 72 Locate
rps7 gene + 138445 138912 468 Locate
ndhB gene + 139187 141398 2212 Locate
trnL-CAA gene + 141943 142023 81 Locate
ycf2 gene − 142575 149414 6840 Locate
trnI-CAU gene + 149503 149576 74 Locate
rpl23 gene + 149742 150023 282 Locate
rpl2 gene + 150042 151533 1492 Locate
rps19 gene + 151586 151628 43 Locate
Status Available
Accession NC_061394.1
Length 152,008 bp
GC content 38.5%
Annotated genes 131
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 13 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources