Physostegia virginiana chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · NC_085368.1 · 1–31 bp · −
trnH-GUG · NC_085368.1 · 152,837–152,880 bp · −
psbA · NC_085368.1 · 385–1,443 bp · −
trnK-UUU · NC_085368.1 · 1,677–4,225 bp · −
matK · NC_085368.1 · 1,984–3,522 bp · −
rps16 · NC_085368.1 · 5,113–6,253 bp · −
trnQ-UUG · NC_085368.1 · 7,392–7,463 bp · −
trnS-GCU · NC_085368.1 · 8,585–8,672 bp · −
atpA · NC_085368.1 · 10,350–11,873 bp · −
atpF · NC_085368.1 · 11,960–13,180 bp · −
atpH · NC_085368.1 · 13,548–13,793 bp · −
atpI · NC_085368.1 · 14,809–15,552 bp · −
rps2 · NC_085368.1 · 15,788–16,498 bp · −
rpoC2 · NC_085368.1 · 19,278–23,459 bp · −
rpoC1 · NC_085368.1 · 23,618–26,457 bp · −
rpoB · NC_085368.1 · 26,484–29,696 bp · −
psbM · NC_085368.1 · 32,367–32,471 bp · −
trnD-GUC · NC_085368.1 · 32,987–33,060 bp · −
trnY-GUA · NC_085368.1 · 33,174–33,257 bp · −
trnE-UUC · NC_085368.1 · 33,317–33,389 bp · −
trnS-UGA · NC_085368.1 · 37,809–37,901 bp · −
trnfM-CAU · NC_085368.1 · 38,861–38,934 bp · −
rps14 · NC_085368.1 · 39,084–39,386 bp · −
psaB · NC_085368.1 · 39,514–41,718 bp · −
psaA · NC_085368.1 · 41,744–43,996 bp · −
ycf3 · NC_085368.1 · 44,754–46,696 bp · −
rps4 · NC_085368.1 · 47,398–48,006 bp · −
trnT-UGU · NC_085368.1 · 48,402–48,474 bp · −
ndhJ · NC_085368.1 · 50,747–51,223 bp · −
ndhK · NC_085368.1 · 51,317–51,994 bp · −
ndhC · NC_085368.1 · 52,047–52,409 bp · −
trnV-UAC · NC_085368.1 · 52,807–53,457 bp · −
atpE · NC_085368.1 · 53,937–54,338 bp · −
atpB · NC_085368.1 · 54,359–55,831 bp · −
psbJ · NC_085368.1 · 65,267–65,389 bp · −
psbL · NC_085368.1 · 65,527–65,643 bp · −
psbF · NC_085368.1 · 65,667–65,786 bp · −
psbE · NC_085368.1 · 65,801–66,052 bp · −
trnW-CCA · NC_085368.1 · 67,224–67,297 bp · −
trnP-UGG · NC_085368.1 · 67,467–67,540 bp · −
rpl20 · NC_085368.1 · 69,293–69,679 bp · −
rps12 · NC_085368.1 · 70,430–70,543 bp · −
rps12 · NC_085368.1 · 97,729–98,522 bp · −
clpP · NC_085368.1 · 70,660–72,544 bp · −
psbN · NC_085368.1 · 74,860–74,991 bp · −
rpoA · NC_085368.1 · 78,381–79,394 bp · −
rps11 · NC_085368.1 · 79,457–79,888 bp · −
rpl36 · NC_085368.1 · 79,976–80,098 bp · −
infA · NC_085368.1 · 80,185–80,418 bp · −
rps8 · NC_085368.1 · 80,540–80,953 bp · −
rpl14 · NC_085368.1 · 81,124–81,492 bp · −
rpl16 · NC_085368.1 · 81,619–82,952 bp · −
rps3 · NC_085368.1 · 83,099–83,761 bp · −
rpl22 · NC_085368.1 · 83,746–84,210 bp · −
rps19 · NC_085368.1 · 84,270–84,548 bp · −
rpl2 · NC_085368.1 · 84,610–86,097 bp · −
rpl23 · NC_085368.1 · 86,116–86,397 bp · −
trnI-CAU · NC_085368.1 · 86,556–86,629 bp · −
trnL-CAA · NC_085368.1 · 94,123–94,203 bp · −
ndhB · NC_085368.1 · 94,748–96,959 bp · −
rps7 · NC_085368.1 · 97,208–97,675 bp · −
trnN-GUU · NC_085368.1 · 108,464–108,536 bp · −
ndhF · NC_085368.1 · 109,917–112,139 bp · −
ndhD · NC_085368.1 · 114,770–116,269 bp · −
psaC · NC_085368.1 · 116,383–116,628 bp · −
ndhE · NC_085368.1 · 116,892–117,197 bp · −
ndhG · NC_085368.1 · 117,406–117,936 bp · −
ndhI · NC_085368.1 · 118,322–118,801 bp · −
ndhA · NC_085368.1 · 118,882–121,044 bp · −
ndhH · NC_085368.1 · 121,046–122,227 bp · −
rps15 · NC_085368.1 · 122,328–122,600 bp · −
ycf1 · NC_085368.1 · 122,967–128,447 bp · −
trnR-ACG · NC_085368.1 · 129,381–129,454 bp · −
rrn5 · NC_085368.1 · 129,689–129,809 bp · −
rrn4.5 · NC_085368.1 · 130,065–130,167 bp · −
rrn23 · NC_085368.1 · 130,266–133,076 bp · −
trnA-UGC · NC_085368.1 · 133,276–134,155 bp · −
trnI-GAU · NC_085368.1 · 134,220–135,226 bp · −
rrn16 · NC_085368.1 · 135,515–137,005 bp · −
trnV-GAC · NC_085368.1 · 137,232–137,303 bp · −
ycf2 · NC_085368.1 · 143,711–150,544 bp · −
psbK · NC_085368.1 · 7,800–7,985 bp · +
psbI · NC_085368.1 · 8,351–8,461 bp · +
trnG-UCC · NC_085368.1 · 9,307–10,049 bp · +
trnR-UCU · NC_085368.1 · 10,182–10,253 bp · +
trnC-GCA · NC_085368.1 · 30,604–30,674 bp · +
petN · NC_085368.1 · 31,499–31,588 bp · +
trnT-GGU · NC_085368.1 · 33,863–33,934 bp · +
psbD · NC_085368.1 · 35,148–36,209 bp · +
psbC · NC_085368.1 · 36,157–37,578 bp · +
psbZ · NC_085368.1 · 38,227–38,415 bp · +
trnG-UCC · NC_085368.1 · 38,636–38,706 bp · +
trnS-GGA · NC_085368.1 · 47,022–47,108 bp · +
trnL-UAA · NC_085368.1 · 49,135–49,713 bp · +
trnF-GAA · NC_085368.1 · 50,009–50,081 bp · +
trnM-CAU · NC_085368.1 · 53,646–53,718 bp · +
rbcL · NC_085368.1 · 56,603–58,069 bp · +
accD · NC_085368.1 · 58,728–60,194 bp · +
psaI · NC_085368.1 · 60,752–60,862 bp · +
ycf4 · NC_085368.1 · 61,288–61,842 bp · +
cemA · NC_085368.1 · 62,395–63,084 bp · +
petA · NC_085368.1 · 63,299–64,261 bp · +
petL · NC_085368.1 · 66,724–66,819 bp · +
petG · NC_085368.1 · 66,994–67,107 bp · +
psaJ · NC_085368.1 · 67,811–67,945 bp · +
rpl33 · NC_085368.1 · 68,419–68,619 bp · +
rps18 · NC_085368.1 · 68,773–69,078 bp · +
rps12 · NC_085368.1 · 138,787–139,580 bp · +
psbB · NC_085368.1 · 72,982–74,508 bp · +
psbT · NC_085368.1 · 74,673–74,774 bp · +
psbH · NC_085368.1 · 75,095–75,316 bp · +
petB · NC_085368.1 · 75,441–76,816 bp · +
petD · NC_085368.1 · 77,004–78,218 bp · +
ycf2 · NC_085368.1 · 86,741–93,598 bp · +
trnV-GAC · NC_085368.1 · 100,006–100,077 bp · +
rrn16 · NC_085368.1 · 100,304–101,794 bp · +
trnI-GAU · NC_085368.1 · 102,083–103,089 bp · +
trnA-UGC · NC_085368.1 · 103,154–104,033 bp · +
rrn23 · NC_085368.1 · 104,233–107,043 bp · +
rrn4.5 · NC_085368.1 · 107,142–107,244 bp · +
rrn5 · NC_085368.1 · 107,500–107,620 bp · +
trnR-ACG · NC_085368.1 · 107,855–107,928 bp · +
ycf1 · NC_085368.1 · 108,862–109,971 bp · +
rpl32 · NC_085368.1 · 112,577–112,753 bp · +
trnL-UAC · NC_085368.1 · 113,454–113,533 bp · +
ccsA · NC_085368.1 · 113,622–114,593 bp · +
trnN-GUU · NC_085368.1 · 128,773–128,845 bp · +
rps7 · NC_085368.1 · 139,634–140,101 bp · +
ndhB · NC_085368.1 · 140,350–142,561 bp · +
trnL-CAA · NC_085368.1 · 143,106–143,186 bp · +
trnI-CAU · NC_085368.1 · 150,626–150,699 bp · +
rpl23 · NC_085368.1 · 150,858–151,139 bp · +
rpl2 · NC_085368.1 · 151,158–152,645 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Physostegia virginiana
ANNOTATED PLASTOME
NC_085368.1
152,880 bp · 131 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38220 76440 114660 152880 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-UCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG ycf1 rpl32 trnL-UAC ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf2 trnH-GUG
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
133 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 1 31 31 Locate
psbA gene − 385 1443 1059 Locate
trnK-UUU gene − 1677 4225 2549 Locate
matK gene − 1984 3522 1539 Locate
rps16 gene − 5113 6253 1141 Locate
trnQ-UUG gene − 7392 7463 72 Locate
psbK gene + 7800 7985 186 Locate
psbI gene + 8351 8461 111 Locate
trnS-GCU gene − 8585 8672 88 Locate
trnG-UCC gene + 9307 10049 743 Locate
trnR-UCU gene + 10182 10253 72 Locate
atpA gene − 10350 11873 1524 Locate
atpF gene − 11960 13180 1221 Locate
atpH gene − 13548 13793 246 Locate
atpI gene − 14809 15552 744 Locate
rps2 gene − 15788 16498 711 Locate
rpoC2 gene − 19278 23459 4182 Locate
rpoC1 gene − 23618 26457 2840 Locate
rpoB gene − 26484 29696 3213 Locate
trnC-GCA gene + 30604 30674 71 Locate
petN gene + 31499 31588 90 Locate
psbM gene − 32367 32471 105 Locate
trnD-GUC gene − 32987 33060 74 Locate
trnY-GUA gene − 33174 33257 84 Locate
trnE-UUC gene − 33317 33389 73 Locate
trnT-GGU gene + 33863 33934 72 Locate
psbD gene + 35148 36209 1062 Locate
psbC gene + 36157 37578 1422 Locate
trnS-UGA gene − 37809 37901 93 Locate
psbZ gene + 38227 38415 189 Locate
trnG-UCC gene + 38636 38706 71 Locate
trnfM-CAU gene − 38861 38934 74 Locate
rps14 gene − 39084 39386 303 Locate
psaB gene − 39514 41718 2205 Locate
psaA gene − 41744 43996 2253 Locate
ycf3 gene − 44754 46696 1943 Locate
trnS-GGA gene + 47022 47108 87 Locate
rps4 gene − 47398 48006 609 Locate
trnT-UGU gene − 48402 48474 73 Locate
trnL-UAA gene + 49135 49713 579 Locate
trnF-GAA gene + 50009 50081 73 Locate
ndhJ gene − 50747 51223 477 Locate
ndhK gene − 51317 51994 678 Locate
ndhC gene − 52047 52409 363 Locate
trnV-UAC gene − 52807 53457 651 Locate
trnM-CAU gene + 53646 53718 73 Locate
atpE gene − 53937 54338 402 Locate
atpB gene − 54359 55831 1473 Locate
rbcL gene + 56603 58069 1467 Locate
accD gene + 58728 60194 1467 Locate
psaI gene + 60752 60862 111 Locate
ycf4 gene + 61288 61842 555 Locate
cemA gene + 62395 63084 690 Locate
petA gene + 63299 64261 963 Locate
psbJ gene − 65267 65389 123 Locate
psbL gene − 65527 65643 117 Locate
psbF gene − 65667 65786 120 Locate
psbE gene − 65801 66052 252 Locate
petL gene + 66724 66819 96 Locate
petG gene + 66994 67107 114 Locate
trnW-CCA gene − 67224 67297 74 Locate
trnP-UGG gene − 67467 67540 74 Locate
psaJ gene + 67811 67945 135 Locate
rpl33 gene + 68419 68619 201 Locate
rps18 gene + 68773 69078 306 Locate
rpl20 gene − 69293 69679 387 Locate
rps12 gene − 70430 70543 114 Locate
clpP gene − 70660 72544 1885 Locate
psbB gene + 72982 74508 1527 Locate
psbT gene + 74673 74774 102 Locate
psbN gene − 74860 74991 132 Locate
psbH gene + 75095 75316 222 Locate
petB gene + 75441 76816 1376 Locate
petD gene + 77004 78218 1215 Locate
rpoA gene − 78381 79394 1014 Locate
rps11 gene − 79457 79888 432 Locate
rpl36 gene − 79976 80098 123 Locate
infA gene − 80185 80418 234 Locate
rps8 gene − 80540 80953 414 Locate
rpl14 gene − 81124 81492 369 Locate
rpl16 gene − 81619 82952 1334 Locate
rps3 gene − 83099 83761 663 Locate
rpl22 gene − 83746 84210 465 Locate
rps19 gene − 84270 84548 279 Locate
rpl2 gene − 84610 86097 1488 Locate
rpl23 gene − 86116 86397 282 Locate
trnI-CAU gene − 86556 86629 74 Locate
ycf2 gene + 86741 93598 6858 Locate
trnL-CAA gene − 94123 94203 81 Locate
ndhB gene − 94748 96959 2212 Locate
rps7 gene − 97208 97675 468 Locate
rps12 gene − 97729 98522 794 Locate
trnV-GAC gene + 100006 100077 72 Locate
rrn16 gene + 100304 101794 1491 Locate
trnI-GAU gene + 102083 103089 1007 Locate
trnA-UGC gene + 103154 104033 880 Locate
rrn23 gene + 104233 107043 2811 Locate
rrn4.5 gene + 107142 107244 103 Locate
rrn5 gene + 107500 107620 121 Locate
trnR-ACG gene + 107855 107928 74 Locate
trnN-GUU gene − 108464 108536 73 Locate
ycf1 gene + 108862 109971 1110 Locate
ndhF gene − 109917 112139 2223 Locate
rpl32 gene + 112577 112753 177 Locate
trnL-UAC gene + 113454 113533 80 Locate
ccsA gene + 113622 114593 972 Locate
ndhD gene − 114770 116269 1500 Locate
psaC gene − 116383 116628 246 Locate
ndhE gene − 116892 117197 306 Locate
ndhG gene − 117406 117936 531 Locate
ndhI gene − 118322 118801 480 Locate
ndhA gene − 118882 121044 2163 Locate
ndhH gene − 121046 122227 1182 Locate
rps15 gene − 122328 122600 273 Locate
ycf1 gene − 122967 128447 5481 Locate
trnN-GUU gene + 128773 128845 73 Locate
trnR-ACG gene − 129381 129454 74 Locate
rrn5 gene − 129689 129809 121 Locate
rrn4.5 gene − 130065 130167 103 Locate
rrn23 gene − 130266 133076 2811 Locate
trnA-UGC gene − 133276 134155 880 Locate
trnI-GAU gene − 134220 135226 1007 Locate
rrn16 gene − 135515 137005 1491 Locate
trnV-GAC gene − 137232 137303 72 Locate
rps12 gene + 138787 139580 794 Locate
rps7 gene + 139634 140101 468 Locate
ndhB gene + 140350 142561 2212 Locate
trnL-CAA gene + 143106 143186 81 Locate
ycf2 gene − 143711 150544 6834 Locate
trnI-CAU gene + 150626 150699 74 Locate
rpl23 gene + 150858 151139 282 Locate
rpl2 gene + 151158 152645 1488 Locate
trnH-GUG gene − 152837 152880 44 Locate
Status Available
Accession NC_085368.1
Length 152,880 bp
GC content 38.4%
Annotated genes 131
Gene sequence records 8
Translation Rna 38 Photosystem Ii 15 Other 13 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources